HCC78 Gene Set

Dataset CCLE Cell Line Gene Expression Profiles
Category transcriptomics
Type cell line
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Genes

268 genes with high or low expression in HCC78 relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
ROS1 ROS proto-oncogene 1 , receptor tyrosine kinase 3.40798
C1ORF116 chromosome 1 open reading frame 116 2.87838
ANKRD13C ankyrin repeat domain 13C 2.75227
TMC5 transmembrane channel-like 5 2.67974
NLRC5 NLR family, CARD domain containing 5 2.59816
N4BP1 NEDD4 binding protein 1 2.58045
OGFOD1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 2.56565
NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 2.53015
PTER phosphotriesterase related 2.50724
ADGRF1 adhesion G protein-coupled receptor F1 2.50328
SEC14L5 SEC14-like 5 (S. cerevisiae) 2.50187
CNOT1 CCR4-NOT transcription complex, subunit 1 2.43251
UBAP1 ubiquitin associated protein 1 2.42965
DCAF12 DDB1 and CUL4 associated factor 12 2.41745
SCGB3A2 secretoglobin, family 3A, member 2 2.40871
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 2.37594
LINC00342 long intergenic non-protein coding RNA 342 2.3579
PAPD5 PAP associated domain containing 5 2.35368
CTSS cathepsin S 2.34791
BCL10 B-cell CLL/lymphoma 10 2.3418
BBS2 Bardet-Biedl syndrome 2 2.32633
MUC4 mucin 4, cell surface associated 2.14363
JRKL JRK-like 2.13446
MAP2K1 mitogen-activated protein kinase kinase 1 2.09703
SP140L SP140 nuclear body protein-like 2.0883
CD2AP CD2-associated protein 2.08517
CFAP20 cilia and flagella associated protein 20 2.08376
CLDN23 claudin 23 2.07932
BAG3 BCL2-associated athanogene 3 2.06356
SOAT1 sterol O-acyltransferase 1 2.05726
CYP2B7P cytochrome P450, family 2, subfamily B, polypeptide 7, pseudogene 2.04754
FAXDC2 fatty acid hydroxylase domain containing 2 2.0457
ZNF468 zinc finger protein 468 2.02978
LMO7 LIM domain 7 2.0209
BRCC3 BRCA1/BRCA2-containing complex, subunit 3 2.00205
BLID BH3-like motif containing, cell death inducer 1.99388
OAT ornithine aminotransferase 1.9854
EPHX3 epoxide hydrolase 3 1.96996
PLEKHA6 pleckstrin homology domain containing, family A member 6 1.96365
TICAM1 toll-like receptor adaptor molecule 1 1.96017
MAP3K13 mitogen-activated protein kinase kinase kinase 13 1.95928
MYO6 myosin VI 1.94195
EXPH5 exophilin 5 1.91173
NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase) 1.90033
SGMS2 sphingomyelin synthase 2 1.89838
VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) 1.89705
GLS glutaminase 1.88971
OR10H1 olfactory receptor, family 10, subfamily H, member 1 1.87612
ZNF319 zinc finger protein 319 1.8636
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 1.8585
PPARD peroxisome proliferator-activated receptor delta 1.8581
MUC16 mucin 16, cell surface associated 1.84816
IDS iduronate 2-sulfatase 1.83664
CD47 CD47 molecule 1.81036
FLJ23867 uncharacterized protein FLJ23867 1.80976
CXCL17 chemokine (C-X-C motif) ligand 17 1.79966
IFNE interferon, epsilon 1.78555
C2ORF54 chromosome 2 open reading frame 54 1.77923
EMP2 epithelial membrane protein 2 1.77063
CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 1.76236
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 1.76207
NKX2-1-AS1 NKX2-1 antisense RNA 1 1.75747
DUSP14 dual specificity phosphatase 14 1.74514
FPGT fucose-1-phosphate guanylyltransferase 1.74482
TRIM11 tripartite motif containing 11 1.74434
HARS2 histidyl-tRNA synthetase 2, mitochondrial 1.73669
ORC6 origin recognition complex, subunit 6 1.73033
ZNF597 zinc finger protein 597 1.72642
RNF169 ring finger protein 169 1.71615
HCP5 HLA complex P5 (non-protein coding) 1.71044
LAMA3 laminin, alpha 3 1.70331
PEG10 paternally expressed 10 1.67923
CCDC87 coiled-coil domain containing 87 1.66263
AP2B1 adaptor-related protein complex 2, beta 1 subunit 1.65023
CST6 cystatin E/M 1.64978
MIEF2 mitochondrial elongation factor 2 1.64953
PRRC2C proline-rich coiled-coil 2C 1.64105
MC2R melanocortin 2 receptor (adrenocorticotropic hormone) 1.64105
STEAP4 STEAP family member 4 1.63882
ZZZ3 zinc finger, ZZ-type containing 3 1.63812
RAB11FIP1 RAB11 family interacting protein 1 (class I) 1.63418
OR10A5 olfactory receptor, family 10, subfamily A, member 5 1.63336
POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa 1.63092
RNF213 ring finger protein 213 1.62267
C15ORF48 chromosome 15 open reading frame 48 1.62108
SFTA2 surfactant associated 2 1.61175
ARHGAP20 Rho GTPase activating protein 20 1.61082
TMOD3 tropomodulin 3 (ubiquitous) 1.60187
DTX3L deltex 3 like, E3 ubiquitin ligase 1.59961
RSPRY1 ring finger and SPRY domain containing 1 1.59748
TOR1AIP2 torsin A interacting protein 2 1.59576
KATNB1 katanin p80 (WD repeat containing) subunit B 1 1.59051
DIAPH1 diaphanous-related formin 1 1.58905
ATP10A ATPase, class V, type 10A 1.57075
QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 1.56815
AFF4 AF4/FMR2 family, member 4 1.56429
LRRC4 leucine rich repeat containing 4 1.55664
TAS2R16 taste receptor, type 2, member 16 1.55482
ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 1.54514
TXNDC17 thioredoxin domain containing 17 1.53818
RHBDL2 rhomboid, veinlet-like 2 (Drosophila) 1.53587
EED embryonic ectoderm development 1.53183
LOC440434 aminopeptidase puromycin sensitive pseudogene 1.52609
SPNS2 spinster homolog 2 (Drosophila) 1.5254
ITFG1 integrin alpha FG-GAP repeat containing 1 1.51936
CAPN8 calpain 8 1.51724
NPLOC4 nuclear protein localization 4 homolog (S. cerevisiae) 1.51321
USB1 U6 snRNA biogenesis 1 1.51092
FBXO28 F-box protein 28 1.50321
SLC30A8 solute carrier family 30 (zinc transporter), member 8 1.50059
MYBPH myosin binding protein H 1.50011
MUC20 mucin 20, cell surface associated 1.49984
CLCF1 cardiotrophin-like cytokine factor 1 1.49697
MERTK MER proto-oncogene, tyrosine kinase 1.48349
NUP93 nucleoporin 93kDa 1.48342
STK32A serine/threonine kinase 32A 1.48093
GOSR1 golgi SNAP receptor complex member 1 1.47481
QSOX1 quiescin Q6 sulfhydryl oxidase 1 1.47478
WFDC10B WAP four-disulfide core domain 10B 1.47358
EXOC8 exocyst complex component 8 1.47206
CD274 CD274 molecule 1.4709
ETV7 ets variant 7 1.46959
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 1.46906
YOD1 YOD1 deubiquitinase 1.46342
CFLAR CASP8 and FADD-like apoptosis regulator 1.45876
SHCBP1 SHC SH2-domain binding protein 1 1.45472
ST14 suppression of tumorigenicity 14 (colon carcinoma) 1.45327
ALDH7A1 aldehyde dehydrogenase 7 family, member A1 1.45217
MYO5B myosin VB 1.45016
VWA5A von Willebrand factor A domain containing 5A 1.44653
C14ORF39 chromosome 14 open reading frame 39 1.44347
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 1.43976
ZNF765 zinc finger protein 765 1.43964
MSANTD1 Myb/SANT-like DNA-binding domain containing 1 1.43897
TREML4 triggering receptor expressed on myeloid cells-like 4 1.43459
VEZT vezatin, adherens junctions transmembrane protein 1.43391
ARHGEF26 Rho guanine nucleotide exchange factor (GEF) 26 1.43193
PTPRH protein tyrosine phosphatase, receptor type, H 1.42937
SCEL sciellin 1.42569
SLC39A1 solute carrier family 39 (zinc transporter), member 1 1.4228
BRIP1 BRCA1 interacting protein C-terminal helicase 1 1.41905
DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13 1.41819
FAM73A family with sequence similarity 73, member A 1.41745
TIPARP-AS1 TIPARP antisense RNA 1 1.41367
OR1A1 olfactory receptor, family 1, subfamily A, member 1 1.40734
SLC38A7 solute carrier family 38, member 7 1.40666
LINC00901 long intergenic non-protein coding RNA 901 1.40389
SPATA6L spermatogenesis associated 6-like 1.40188
MISP mitotic spindle positioning 1.39754
FAF2 Fas associated factor family member 2 1.39587
ZNF185 zinc finger protein 185 (LIM domain) 1.39584
TJP1 tight junction protein 1 1.39407
SLFN13 schlafen family member 13 1.38923
USP33 ubiquitin specific peptidase 33 1.38864
CRB3 crumbs family member 3 1.38835
PHKB phosphorylase kinase, beta 1.38723
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 1.38712
LOC100505918 uncharacterized LOC100505918 1.3864
FBXO32 F-box protein 32 1.3859
AKTIP AKT interacting protein 1.38394
ZDHHC9 zinc finger, DHHC-type containing 9 1.38144
CXCL16 chemokine (C-X-C motif) ligand 16 1.3802
KRT7 keratin 7, type II 1.37837
PRKCZ protein kinase C, zeta 1.37766
LPP LIM domain containing preferred translocation partner in lipoma 1.37679
C4ORF47 chromosome 4 open reading frame 47 1.37211
RC3H1 ring finger and CCCH-type domains 1 1.36184
GPATCH2 G patch domain containing 2 1.35527
COQ9 coenzyme Q9 1.35444
HS6ST2 heparan sulfate 6-O-sulfotransferase 2 1.35212
ZNF304 zinc finger protein 304 1.35153
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 1.35055

low expression

Symbol Name Standardized Value
GIPR gastric inhibitory polypeptide receptor -3.35311
LINC00475 long intergenic non-protein coding RNA 475 -2.71453
ZNF555 zinc finger protein 555 -2.70503
PEPD peptidase D -2.50908
ABHD6 abhydrolase domain containing 6 -2.46055
GPC2 glypican 2 -2.42527
CDH20 cadherin 20, type 2 -2.34869
ZNF775 zinc finger protein 775 -2.33957
SEMA6B sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B -2.2748
LINC00485 long intergenic non-protein coding RNA 485 -2.21866
C1ORF168 chromosome 1 open reading frame 168 -2.13884
FAM171A2 family with sequence similarity 171, member A2 -2.10301
CA3 carbonic anhydrase III -2.08752
PHOSPHO1 phosphatase, orphan 1 -2.03545
LPCAT3 lysophosphatidylcholine acyltransferase 3 -2.0078
ZGLP1 zinc finger, GATA-like protein 1 -1.97644
STK40 serine/threonine kinase 40 -1.96312
RNF180 ring finger protein 180 -1.95283
GNL1 guanine nucleotide binding protein-like 1 -1.93978
TRPM8 transient receptor potential cation channel, subfamily M, member 8 -1.92601
SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 -1.91291
FAM47C family with sequence similarity 47, member C -1.88035
RXFP2 relaxin/insulin-like family peptide receptor 2 -1.84925
LIPC lipase, hepatic -1.83813
ZNF527 zinc finger protein 527 -1.83357
TCEA2 transcription elongation factor A (SII), 2 -1.83156
ZBTB45 zinc finger and BTB domain containing 45 -1.82313
DPF1 D4, zinc and double PHD fingers family 1 -1.8196
PRAM1 PML-RARA regulated adaptor molecule 1 -1.81065
SCARF2 scavenger receptor class F, member 2 -1.81061
F10 coagulation factor X -1.80381
FAM3D family with sequence similarity 3, member D -1.80205
FAM9C family with sequence similarity 9, member C -1.79982
RAB8B RAB8B, member RAS oncogene family -1.79673
NELFCD negative elongation factor complex member C/D -1.78736
SHANK2-AS3 SHANK2 antisense RNA 3 -1.7776
TMEM260 transmembrane protein 260 -1.76249
ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 -1.75293
PPT2 palmitoyl-protein thioesterase 2 -1.74903
DCAKD dephospho-CoA kinase domain containing -1.73875
TRIM9 tripartite motif containing 9 -1.72838
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -1.70205
C11ORF31 chromosome 11 open reading frame 31 -1.686
ARHGEF37 Rho guanine nucleotide exchange factor (GEF) 37 -1.68544
PHLDB3 pleckstrin homology-like domain, family B, member 3 -1.6804
PLA2G4F phospholipase A2, group IVF -1.67825
SPACA6P sperm acrosome associated 6, pseudogene -1.65345
IFT140 intraflagellar transport 140 -1.64696
FLYWCH2 FLYWCH family member 2 -1.64376
TRIM63 tripartite motif containing 63, E3 ubiquitin protein ligase -1.64274
ADGRV1 adhesion G protein-coupled receptor V1 -1.6412
TNRC6C trinucleotide repeat containing 6C -1.62252
ANKRD30B ankyrin repeat domain 30B -1.62033
MAMDC4 MAM domain containing 4 -1.61778
RSPH4A radial spoke head 4 homolog A (Chlamydomonas) -1.61433
ETFB electron-transfer-flavoprotein, beta polypeptide -1.61366
NXF5 nuclear RNA export factor 5 -1.61031
FUOM fucose mutarotase -1.60605
RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 -1.60471
MARCO macrophage receptor with collagenous structure -1.60067
DMRT3 doublesex and mab-3 related transcription factor 3 -1.59803
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog -1.59596
ZFP14 ZFP14 zinc finger protein -1.58331
ADAMTSL5 ADAMTS-like 5 -1.56805
PURG purine-rich element binding protein G -1.56769
TMEM60 transmembrane protein 60 -1.56387
LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 -1.56154
GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 -1.54871
LEP leptin -1.54067
VAPB VAMP (vesicle-associated membrane protein)-associated protein B and C -1.53936
WFDC5 WAP four-disulfide core domain 5 -1.52605
ZNF90 zinc finger protein 90 -1.5234
FABP4 fatty acid binding protein 4, adipocyte -1.52309
LOC100505942 uncharacterized LOC100505942 -1.50973
C9ORF91 chromosome 9 open reading frame 91 -1.50773
SLC43A2 solute carrier family 43 (amino acid system L transporter), member 2 -1.50083
SLC5A12 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 -1.49686
RFX2 regulatory factor X, 2 (influences HLA class II expression) -1.49099
KRT24 keratin 24, type I -1.48925
SDK2 sidekick cell adhesion molecule 2 -1.4888
BEST3 bestrophin 3 -1.48872
GRK4 G protein-coupled receptor kinase 4 -1.48859
RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6 -1.48537
C9ORF89 chromosome 9 open reading frame 89 -1.47808
TLE6 transducin-like enhancer of split 6 -1.47526
KIAA1257 KIAA1257 -1.47156
LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 -1.4677
PDE7B phosphodiesterase 7B -1.46664
IGLV3-10 immunoglobulin lambda variable 3-10 -1.46408
C1QTNF7 C1q and tumor necrosis factor related protein 7 -1.4621
LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) -1.46192
ANKDD1A ankyrin repeat and death domain containing 1A -1.45869
APOBR apolipoprotein B receptor -1.45718
GLI2 GLI family zinc finger 2 -1.45666
LRRC71 leucine rich repeat containing 71 -1.45501
DCDC2B doublecortin domain containing 2B -1.45343