HCT15 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

125 genes with high or low copy number in HCT15 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
GLTSCR2 glioma tumor suppressor candidate region gene 2 3.2803
BIN1 bridging integrator 1 3.2803
SOX6 SRY (sex determining region Y)-box 6 3.2803
GAL3ST2 galactose-3-O-sulfotransferase 2 3.2803
ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 3.2803
SNORD23 small nucleolar RNA, C/D box 23 3.2803
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 3.2803
MEIG1 meiosis/spermiogenesis associated 1 3.2803
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 3.27832
LOC643733 caspase 4, apoptosis-related cysteine peptidase pseudogene 3.26126
SORD sorbitol dehydrogenase 3.25442
RGAG1 retrotransposon gag domain containing 1 3.23402
TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 3.23227
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 3.22553
USP20 ubiquitin specific peptidase 20 3.02347
HCG22 HLA complex group 22 2.92059
NELL1 NEL-like 1 (chicken) 2.89018
LINC01194 long intergenic non-protein coding RNA 1194 2.88266
DOCK8 dedicator of cytokinesis 8 2.69351
FAM153A family with sequence similarity 153, member A 2.65107
TMEM108 transmembrane protein 108 2.60005
AMMECR1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 2.59778
FAM74A1 family with sequence similarity 74, member A1 2.58907
SPATA31A1 SPATA31 subfamily A, member 1 2.58288
FRY furry homolog (Drosophila) 2.55359
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 2.48445
SPATA6 spermatogenesis associated 6 2.43408
SV2C synaptic vesicle glycoprotein 2C 2.42531
MYOM2 myomesin 2 2.40498
GABRG3 gamma-aminobutyric acid (GABA) A receptor, gamma 3 2.40448
EIF2B1 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa 2.37403
RRP7BP ribosomal RNA processing 7 homolog B (S. cerevisiae), pseudogene 2.30708
BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2.30414
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 2.23118
GTF2H3 general transcription factor IIH, polypeptide 3, 34kDa 2.21524
SEMA6D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 2.19371
CCNY cyclin Y 2.16448
EPHX2 epoxide hydrolase 2, cytoplasmic 2.13865
DLL4 delta-like 4 (Drosophila) 2.13265
PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D 2.12212
LOC100133286 uncharacterized LOC100133286 2.11071
GALNT15 polypeptide N-acetylgalactosaminyltransferase 15 2.08923
RHOV ras homolog family member V 2.05415
PRR5 proline rich 5 (renal) 2.05343
CHAC1 ChaC glutathione-specific gamma-glutamylcyclotransferase 1 2.04452
VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae) 2.04374
DLG2 discs, large homolog 2 (Drosophila) 2.04093
SPINT1 serine peptidase inhibitor, Kunitz type 1 2.02996
SERHL2 serine hydrolase-like 2 2.01096
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 1.81485
NUTM2A NUT family member 2A 1.80081
C21ORF33 chromosome 21 open reading frame 33 1.76184
PWP2 PWP2 periodic tryptophan protein homolog (yeast) 1.76184
ADAM3A ADAM metallopeptidase domain 3A (pseudogene) 1.75602
HTATIP2 HIV-1 Tat interactive protein 2, 30kDa 1.73545
CDRT15P2 CMT1A duplicated region transcript 15 pseudogene 2 1.73286
GOLGA6L9 golgin A6 family-like 9 1.72
RPS17 ribosomal protein S17 1.71969
MLIP muscular LMNA-interacting protein 1.71486
FRK fyn-related Src family tyrosine kinase 1.71379
INADL InaD-like (Drosophila) 1.70026
PRMT3 protein arginine methyltransferase 3 1.69317
UBE2Q2P2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 1.68497
C9ORF62 chromosome 9 open reading frame 62 1.63189
PRR5-ARHGAP8 PRR5-ARHGAP8 readthrough 1.62462
KIF1B kinesin family member 1B 1.60423
EGFR epidermal growth factor receptor 1.60039
UGT2B15 UDP glucuronosyltransferase 2 family, polypeptide B15 1.60013
NT5DC3 5'-nucleotidase domain containing 3 1.59934
LOC100129534 small nuclear ribonucleoprotein polypeptide N pseudogene 1.58903
PLCH2 phospholipase C, eta 2 1.58279
HES5 hes family bHLH transcription factor 5 1.58266
PANK4 pantothenate kinase 4 1.58257
FAM213B family with sequence similarity 213, member B 1.58222
LOC115110 uncharacterized LOC115110 1.58206
TNFRSF14 tumor necrosis factor receptor superfamily, member 14 1.58206
MMEL1 membrane metallo-endopeptidase-like 1 1.58162
FAM185A family with sequence similarity 185, member A 1.58112
UGT2B28 UDP glucuronosyltransferase 2 family, polypeptide B28 1.57858
MORN1 MORN repeat containing 1 1.57489
PTPRK protein tyrosine phosphatase, receptor type, K 1.57439
TTC41P tetratricopeptide repeat domain 41, pseudogene 1.56874
FNIP2 folliculin interacting protein 2 1.56662
GABRD gamma-aminobutyric acid (GABA) A receptor, delta 1.56497
RER1 retention in endoplasmic reticulum sorting receptor 1 1.56283
PEX10 peroxisomal biogenesis factor 10 1.56272
C1ORF86 chromosome 1 open reading frame 86 1.56037
SKI SKI proto-oncogene 1.56029
TTC34 tetratricopeptide repeat domain 34 1.55443
C4ORF45 chromosome 4 open reading frame 45 1.54882
MIR3688-1 microRNA 3688-1 1.54793
MIR3688-2 microRNA 3688-2 1.54793
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 1.54445
WWOX WW domain containing oxidoreductase 1.54146
PPID peptidylprolyl isomerase D 1.53832
CMSS1 cms1 ribosomal small subunit homolog (yeast) 1.53704
FILIP1L filamin A interacting protein 1-like 1.53686
PRKCZ protein kinase C, zeta 1.52777
LINGO2 leucine rich repeat and Ig domain containing 2 1.51099
RFPL4B ret finger protein-like 4B 1.49821
WISP3 WNT1 inducible signaling pathway protein 3 1.46151
FAM229B family with sequence similarity 229, member B 1.46151
TUBE1 tubulin, epsilon 1 1.46151
LAMA4 laminin, alpha 4 1.46127
FYN FYN proto-oncogene, Src family tyrosine kinase 1.42311
TMEM177 transmembrane protein 177 1.36567
CFAP221 cilia and flagella associated protein 221 1.36567
NUP210 nucleoporin 210kDa 1.32796

low copy number

Symbol Name Standardized Value
HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled -3.21049
VIM vimentin -2.6939
MIR1827 microRNA 1827 -2.59447
PEAK1 pseudopodium-enriched atypical kinase 1 -2.34459
BRMS1L breast cancer metastasis-suppressor 1-like -1.8964
SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 -1.85266
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) -1.83541
KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 -1.72963
MIR4317 microRNA 4317 -1.72701
PREP prolyl endopeptidase -1.72466
OR4F5 olfactory receptor, family 4, subfamily F, member 5 -1.57275
TXNL4B thioredoxin-like 4B -1.5019
ERC2 ELKS/RAB6-interacting/CAST family member 2 -1.48307
CUBN cubilin (intrinsic factor-cobalamin receptor) -1.47728
WDR63 WD repeat domain 63 -1.40701
HPR haptoglobin-related protein -1.39325
HP haptoglobin -1.39325