HLF Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description hepatic leukemia factor|This gene encodes a member of the proline and acidic-rich (PAR) protein family, a subset of the bZIP transcription factors. The encoded protein forms homodimers or heterodimers with other PAR family members and binds sequence-specific promoter elements to activate transcription. Chromosomal translocations fusing portions of this gene with the E2A gene cause a subset of childhood B-lineage acute lymphoid leukemias. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Jul 2008] (NCBI Entrez Gene Database, 3131)
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Genes

715 genes with high or low copy number in HLF relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
RSU1 Ras suppressor protein 1 3.27885
PTPN21 protein tyrosine phosphatase, non-receptor type 21 3.27152
RNF150 ring finger protein 150 2.67151
NOAZFP nucleolar atypical zinc finger 2.6709
LOC344967 acyl-CoA thioesterase 7 pseudogene 2.65129
CHRNA9 cholinergic receptor, nicotinic, alpha 9 (neuronal) 2.61022
RHOH ras homolog family member H 2.6078
MIR4802 microRNA 4802 2.60686
NSUN7 NOP2/Sun domain family, member 7 2.60686
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 2.60586
RBM47 RNA binding motif protein 47 2.60491
N4BP2 NEDD4 binding protein 2 2.60271
ADORA3 adenosine A3 receptor 2.47968
FRMPD2B FERM and PDZ domain containing 2B, pseudogene 2.28984
MRPL19 mitochondrial ribosomal protein L19 2.21302
LEPR leptin receptor 2.06941
B3GNT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 1.95502
ARMC9 armadillo repeat containing 9 1.95471
MIR4777 microRNA 4777 1.95419
MIR1471 microRNA 1471 1.95168
NPPC natriuretic peptide C 1.95168
COPS7B COP9 signalosome subunit 7B 1.95168
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta 1.95168
PTMA prothymosin, alpha 1.95089
TVP23C-CDRT4 TVP23C-CDRT4 readthrough 1.92487
TVP23C trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) 1.92484
CDRT4 CMT1A duplicated region transcript 4 1.92473
LINC00869 long intergenic non-protein coding RNA 869 1.91335
HIST2H2BF histone cluster 2, H2bf 1.90738
NOX5 NADPH oxidase, EF-hand calcium binding domain 5 1.90178
HTR2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled 1.89145
PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 1.89145
LINC00471 long intergenic non-protein coding RNA 471 1.89131
C2ORF72 chromosome 2 open reading frame 72 1.89068
NUCLEOLIN nucleolin multifunctional protein 1.88994
NMUR1 neuromedin U receptor 1 1.88985
SNORA75 small nucleolar RNA, H/ACA box 75 1.88985
SNORD82 small nucleolar RNA, C/D box 82 1.88985
SNORD20 small nucleolar RNA, C/D box 20 1.88985
C2ORF57 chromosome 2 open reading frame 57 1.88163
TEKT3 tektin 3 1.86431
MIR548D2 microRNA 548d-2 1.83932
MIR548AA2 microRNA 548aa-2 1.83932
MAP9 microtubule-associated protein 9 1.83776
NPY2R neuropeptide Y receptor Y2 1.83773
HMGB2 high mobility group box 2 1.81659
HAND2-AS1 HAND2 antisense RNA 1 (head to head) 1.81648
HAND2 heart and neural crest derivatives expressed 2 1.81648
SAP30 Sin3A-associated protein, 30kDa 1.81648
SCRG1 stimulator of chondrogenesis 1 1.81648
MIR4276 microRNA 4276 1.81638
HPGD hydroxyprostaglandin dehydrogenase 15-(NAD) 1.81609
TDO2 tryptophan 2,3-dioxygenase 1.816
ASIC5 acid sensing (proton gated) ion channel family member 5 1.816
GUCY1B3 guanylate cyclase 1, soluble, beta 3 1.81597
PMP22 peripheral myelin protein 22 1.81224
ADAM29 ADAM metallopeptidase domain 29 1.8119
FAT1 FAT atypical cadherin 1 1.80831
FGB fibrinogen beta chain 1.80789
FGA fibrinogen alpha chain 1.80789
FGG fibrinogen gamma chain 1.80789
CEP44 centrosomal protein 44kDa 1.80769
ECEL1 endothelin converting enzyme-like 1 1.80768
FBXO8 F-box protein 8 1.80752
ALPI alkaline phosphatase, intestinal 1.80735
LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) 1.8066
RBM46 RNA binding motif protein 46 1.80655
DCHS2 dachsous cadherin-related 2 1.80545
GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 1.8054
RAB3C RAB3C, member RAS oncogene family 1.79431
LINC00290 long intergenic non-protein coding RNA 290 1.79377
CHRND cholinergic receptor, nicotinic, delta (muscle) 1.78509
CHRNG cholinergic receptor, nicotinic, gamma (muscle) 1.78509
PRSS56 protease, serine, 56 1.784
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 1.77988
TLR3 toll-like receptor 3 1.7767
UFSP2 UFM1-specific peptidase 2 1.77563
C4ORF47 chromosome 4 open reading frame 47 1.77563
LRP2BP LRP2 binding protein 1.77563
CCDC110 coiled-coil domain containing 110 1.77563
ANKRD37 ankyrin repeat domain 37 1.77563
PDLIM3 PDZ and LIM domain 3 1.77563
POU4F2 POU class 4 homeobox 2 1.77542
ANXA2P1 annexin A2 pseudogene 1 1.77505
MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae) 1.77465
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 1.7722
GLRA3 glycine receptor, alpha 3 1.76813
SFRP2 secreted frizzled-related protein 2 1.76288
RNF175 ring finger protein 175 1.76271
TLR2 toll-like receptor 2 1.76271
PLRG1 pleiotropic regulator 1 1.76128
FHDC1 FH2 domain containing 1 1.75985
LOC339975 uncharacterized LOC339975 1.75786
TRIM2 tripartite motif containing 2 1.7553
LOC100506122 uncharacterized LOC100506122 1.75456
KIAA0922 KIAA0922 1.75375
TLL1 tolloid-like 1 1.7513
PCDH18 protocadherin 18 1.75076
SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 1.74782
SLED1 proteoglycan 3 pseudogene 1.74613
ACSL1 acyl-CoA synthetase long-chain family member 1 1.74558
MIR3945 microRNA 3945 1.74537
LOC731424 uncharacterized LOC731424 1.74537
STOX2 storkhead box 2 1.7436
NEK1 NIMA-related kinase 1 1.73698
LSM6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 1.73672
LINC01095 long intergenic non-protein coding RNA 1095 1.73669
SLC10A7 solute carrier family 10, member 7 1.73658
ZNF827 zinc finger protein 827 1.73592
AADAT aminoadipate aminotransferase 1.73468
TBC1D9 TBC1 domain family, member 9 (with GRAM domain) 1.73353
GATB glutamyl-tRNA(Gln) amidotransferase, subunit B 1.73141
ARFIP1 ADP-ribosylation factor interacting protein 1 1.72842
PRSS48 protease, serine, 48 1.72823
MMAA methylmalonic aciduria (cobalamin deficiency) cblA type 1.72657
C4ORF51 chromosome 4 open reading frame 51 1.72657
TIGD4 tigger transposable element derived 4 1.72475
TMEM154 transmembrane protein 154 1.72444
MIR3140 microRNA 3140 1.72441
TTC29 tetratricopeptide repeat domain 29 1.7234
MIR548T microRNA 548t 1.72306
SPCS3 signal peptidase complex subunit 3 homolog (S. cerevisiae) 1.72226
SPATA4 spermatogenesis associated 4 1.72226
FAM160A1 family with sequence similarity 160, member A1 1.72187
LOC728175 uncharacterized LOC728175 1.7145
HSP90AA6P heat shock protein 90kDa alpha (cytosolic), class A member 6, pseudogene 1.71234
C2CD2 C2 calcium-dependent domain containing 2 1.71161
MGC45800 1.71022
GUCY1A3 guanylate cyclase 1, soluble, alpha 3 1.70838
MAB21L2 mab-21-like 2 (C. elegans) 1.70783
LGALS9B lectin, galactoside-binding, soluble, 9B 1.7072
FAM198B family with sequence similarity 198, member B 1.70709
LINC01093 long intergenic non-protein coding RNA 1093 1.7058
HELT helt bHLH transcription factor 1.70556
FLJ38576 uncharacterized LOC651430 1.70371
PALLD palladin, cytoskeletal associated protein 1.70342
FNIP2 folliculin interacting protein 2 1.70266
CASP3 caspase 3, apoptosis-related cysteine peptidase 1.70001
FAM218A family with sequence similarity 218, member A 1.69967
TRIM61 tripartite motif containing 61 1.6995
CLCN3 chloride channel, voltage-sensitive 3 1.69945
C4ORF27 chromosome 4 open reading frame 27 1.69944
TMEM192 transmembrane protein 192 1.69925
TRIM60 tripartite motif containing 60 1.69922
CENPU centromere protein U 1.69922
LINC01207 long intergenic non-protein coding RNA 1207 1.69735
MTNR1A melatonin receptor 1A 1.69629
MIR578 microRNA 578 1.69505
MSMO1 methylsterol monooxygenase 1 1.69505
GK3P glycerol kinase 3 pseudogene 1.69505
C4ORF45 chromosome 4 open reading frame 45 1.69337
TRIML2 tripartite motif family-like 2 1.69314
UCP1 uncoupling protein 1 (mitochondrial, proton carrier) 1.69303
ZFP42 ZFP42 zinc finger protein 1.69298
TRIML1 tripartite motif family-like 1 1.69279
ABCE1 ATP-binding cassette, sub-family E (OABP), member 1 1.69176
MFAP3L microfibrillar-associated protein 3-like 1.69171
ANAPC10 anaphase promoting complex subunit 10 1.69171
LOC100506085 uncharacterized LOC100506085 1.69087
MIR3688-1 microRNA 3688-1 1.69018
MIR3688-2 microRNA 3688-2 1.69018
SORBS2 sorbin and SH3 domain containing 2 1.69012
EDNRA endothelin receptor type A 1.68973
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 1.68934
ELMOD2 ELMO/CED-12 domain containing 2 1.68925
MEIS3P1 Meis homeobox 3 pseudogene 1 1.68918
TRAPPC11 trafficking protein particle complex 11 1.68892
RWDD4 RWD domain containing 4 1.68876
CLDN24 claudin 24 1.68839
CLDN22 claudin 22 1.68839
LOC389247 uncharacterized LOC389247 1.68819
ING2 inhibitor of growth family, member 2 1.68819
CDKN2AIP CDKN2A interacting protein 1.68805
RNU6-34P RNA, U6 small nuclear 34, pseudogene 1.68684
RNU6-33P RNA, U6 small nuclear 33, pseudogene 1.68684
F11 coagulation factor XI 1.68663
MIR4453 microRNA 4453 1.68485
DKFZP434I0714 uncharacterized protein DKFZP434I0714 1.68485
AGA aspartylglucosaminidase 1.6829
ASB5 ankyrin repeat and SOCS box containing 5 1.68289
CTSO cathepsin O 1.68277
SNORD73A small nucleolar RNA, C/D box 73A 1.68276
SH3D19 SH3 domain containing 19 1.68253
WDR17 WD repeat domain 17 1.68247
WWC2-AS2 WWC2 antisense RNA 2 1.6818
FAM92A1P2 family with sequence similarity 92, member A3 1.6818
NEIL3 nei endonuclease VIII-like 3 (E. coli) 1.68125
EFHD1 EF-hand domain family, member D1 1.68037
LOC340017 uncharacterized LOC340017 1.67976
TMEM184C transmembrane protein 184C 1.6797
KLKB1 kallikrein B, plasma (Fletcher factor) 1 1.67611
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 1.67611
TMEM144 transmembrane protein 144 1.67569
SH3RF1 SH3 domain containing ring finger 1 1.67399
CBR4 carbonyl reductase 4 1.67338
MIR1305 microRNA 1305 1.67296
SCOC short coiled-coil protein 1.67218
CLGN calmegin 1.67218
SCOC-AS1 SCOC antisense RNA 1 1.67218
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 1.67211
CFAP97 cilia and flagella associated protein 97 1.67159
ETFDH electron-transferring-flavoprotein dehydrogenase 1.67138
C4ORF46 chromosome 4 open reading frame 46 1.67138
SLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 1.67128
LINC00499 long intergenic non-protein coding RNA 499 1.67119
OTUD4 OTU deubiquitinase 4 1.67037
CDRT15L2 CMT1A duplicated region transcript 15-like 2 1.66867
SMAD1 SMAD family member 1 1.66538
PPID peptidylprolyl isomerase D 1.66515
ANXA10 annexin A10 1.66295
APELA apelin receptor early endogenous ligand 1.66251
F11-AS1 F11 antisense RNA 1 1.66112
IRF2 interferon regulatory factor 2 1.66043
CDRT1 CMT1A duplicated region transcript 1 1.66038
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like 1.66036
FLJ36000 uncharacterized FLJ36000 1.65579
CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 1.65515
SNX25 sorting nexin 25 1.65494
MIR4799 microRNA 4799 1.65433
TENM3 teneurin transmembrane protein 3 1.65356
TKTL2 transketolase-like 2 1.65294
NPY5R neuropeptide Y receptor Y5 1.65284
NPY1R neuropeptide Y receptor Y1 1.65277
TMA16 translation machinery associated 16 homolog (S. cerevisiae) 1.6527
IL15 interleukin 15 1.65021
ALPPL2 alkaline phosphatase, placental-like 2 1.64907
ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 1.64711
RPS3A ribosomal protein S3A 1.64647
VEGFC vascular endothelial growth factor C 1.64639
DCTD dCMP deaminase 1.64626
MIR1288 microRNA 1288 1.64437
MGST2 microsomal glutathione S-transferase 2 1.63961
SETD7 SET domain containing (lysine methyltransferase) 7 1.63771
RAB33B RAB33B, member RAS oncogene family 1.63771
SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 1.63747
LINC00616 long intergenic non-protein coding RNA 616 1.63626
UBB ubiquitin B 1.63309
CENPV centromere protein V 1.63307
KCNJ13 potassium channel, inwardly rectifying subfamily J, member 13 1.63292
MGARP mitochondria-localized glutamic acid-rich protein 1.63051
NDUFC1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 1.63051
ANP32C acidic (leucine-rich) nuclear phosphoprotein 32 family, member C 1.62753
TAPT1-AS1 TAPT1 antisense RNA 1 (head to head) 1.62749
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 1.6273
ZBED11 zinc finger BED-type containing 11 1.62655
TAPT1 transmembrane anterior posterior transformation 1 1.62645
NRXN1 neurexin 1 1.6259
DIS3L2 DIS3 like 3'-5' exoribonuclease 2 1.62561
TBC1D26 TBC1 domain family, member 26 1.62478
FGFBP1 fibroblast growth factor binding protein 1 1.62477
FGFBP2 fibroblast growth factor binding protein 2 1.62477
TRIM16 tripartite motif containing 16 1.6241
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase 1.62294
TTC19 tetratricopeptide repeat domain 19 1.62288
DCLK2 doublecortin-like kinase 2 1.62158
ZSWIM7 zinc finger, SWIM-type containing 7 1.62148
ADORA2B adenosine A2b receptor 1.62093
GRIA2 glutamate receptor, ionotropic, AMPA 2 1.61759
CDRT15P2 CMT1A duplicated region transcript 15 pseudogene 2 1.61747
KLHL2 kelch-like family member 2 1.61715
FBXL5 F-box and leucine-rich repeat protein 5 1.61714
IZUMO4 IZUMO family member 4 1.61545
AP3D1 adaptor-related protein complex 3, delta 1 subunit 1.61531
ECEL1P2 endothelin converting enzyme-like 1, pseudogene 2 1.61424
PRMT9 protein arginine methyltransferase 9 1.60925
PIGL phosphatidylinositol glycan anchor biosynthesis, class L 1.60901
MOB3A MOB kinase activator 3A 1.60842
NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 1.60769
CCDC144CP coiled-coil domain containing 144C, pseudogene 1.60659
C1QTNF7 C1q and tumor necrosis factor related protein 7 1.60358
NAF1 nuclear assembly factor 1 ribonucleoprotein 1.60285
RXFP1 relaxin/insulin-like family peptide receptor 1 1.60199
BST1 bone marrow stromal cell antigen 1 1.6005
SNORD49A small nucleolar RNA, C/D box 49A 1.59945
SNORD65 small nucleolar RNA, C/D box 65 1.59945
TRPV2 transient receptor potential cation channel, subfamily V, member 2 1.59945
SNORD49B small nucleolar RNA, C/D box 49B 1.59945
CD38 CD38 molecule 1.59925
GIGYF2 GRB10 interacting GYF protein 2 1.59888
TMEM11 transmembrane protein 11 1.59817
NATD1 N-acetyltransferase domain containing 1 1.59816
ZNF287 zinc finger protein 287 1.59773
CPE carboxypeptidase E 1.59738
WWC2 WW and C2 domain containing 2 1.59694
ELF2 E74-like factor 2 (ets domain transcription factor) 1.59639
CLRN2 clarin 2 1.59545
QDPR quinoid dihydropteridine reductase 1.59545
ZNF286A zinc finger protein 286A 1.59088
ZNF518B zinc finger protein 518B 1.59032
GLRB glycine receptor, beta 1.58902
ARHGAP10 Rho GTPase activating protein 10 1.58781
NCOR1 nuclear receptor corepressor 1 1.58774
SMCR5 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding) 1.58513
FAM149A family with sequence similarity 149, member A 1.58477
LINC01085 long intergenic non-protein coding RNA 1085 1.58304
SLC7A11-AS1 SLC7A11 antisense RNA 1 1.58087
DCAF16 DDB1 and CUL4 associated factor 16 1.58044
NCAPG non-SMC condensin I complex, subunit G 1.58044
MKNK2 MAP kinase interacting serine/threonine kinase 2 1.57992
USP22 ubiquitin specific peptidase 22 1.57956
USP38 ubiquitin specific peptidase 38 1.579
MED28 mediator complex subunit 28 1.57841
FAM184B family with sequence similarity 184, member B 1.57808
CCDC144NL coiled-coil domain containing 144 family, N-terminal like 1.57496
FBXL7 F-box and leucine-rich repeat protein 7 1.57483
MIR33B microRNA 33b 1.57171
SREBF1 sterol regulatory element binding transcription factor 1 1.57157
HHIP-AS1 HHIP antisense RNA 1 1.56977
CC2D2A coiled-coil and C2 domain containing 2A 1.56955
HHIP hedgehog interacting protein 1.56913
GATSL3 GATS protein-like 3 1.56892
TBC1D10A TBC1 domain family, member 10A 1.5688
DHRS7B dehydrogenase/reductase (SDR family) member 7B 1.56801
LRRC75A-AS1 LRRC75A antisense RNA 1 1.56723
LRRC75A leucine rich repeat containing 75A 1.56723
FRG1 FSHD region gene 1 1.56696
KRT16P3 keratin 16 pseudogene 3 1.56293
HSP90AB2P heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene 1.56128
MIR3138 microRNA 3138 1.55913
GPM6A glycoprotein M6A 1.55873
CPEB2 cytoplasmic polyadenylation element binding protein 2 1.55823
CPEB2-AS1 CPEB2 antisense RNA 1 (head to head) 1.55823
CLNK cytokine-dependent hematopoietic cell linker 1.55773
KCNJ12 potassium channel, inwardly rectifying subfamily J, member 12 1.55626
KCNJ18 potassium channel, inwardly rectifying subfamily J, member 18 1.55626
MIR4798 microRNA 4798 1.55535
MIR572 microRNA 572 1.55313
HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 1.55305
HSP90AA4P heat shock protein 90kDa alpha (cytosolic), class A member 4, pseudogene 1.55233
OSM oncostatin M 1.55114
LCORL ligand dependent nuclear receptor corepressor-like 1.55078
LIF leukemia inhibitory factor 1.55058
FAM27L family with sequence similarity 27-like 1.54934
HORMAD2 HORMA domain containing 2 1.54825
SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 1.54723
GUSBP5 glucuronidase, beta pseudogene 5 1.54671
AKAP10 A kinase (PRKA) anchor protein 10 1.54343
MIEF2 mitochondrial elongation factor 2 1.54286
SHMT1 serine hydroxymethyltransferase 1 (soluble) 1.54281
SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 1.54281
TOM1L2 target of myb1-like 2 (chicken) 1.54279
MAP2K3 mitogen-activated protein kinase kinase 3 1.54107
SF3A1 splicing factor 3a, subunit 1, 120kDa 1.54076
GRPEL1 GrpE-like 1, mitochondrial (E. coli) 1.54039
FLJ36777 uncharacterized LOC730971 1.54039
LOC100129931 uncharacterized LOC100129931 1.54034
CCDC96 coiled-coil domain containing 96 1.54034
TADA2B transcriptional adaptor 2B 1.54034
MIR4454 microRNA 4454 1.54009
PDS5A PDS5 cohesin associated factor A 1.53983
TBC1D14 TBC1 domain family, member 14 1.5374
HTRA3 HtrA serine peptidase 3 1.53708
NKX3-2 NK3 homeobox 2 1.53665
LINC01096 long intergenic non-protein coding RNA 1096 1.53665
LINC01097 long intergenic non-protein coding RNA 1097 1.53665
MIR5091 microRNA 5091 1.53662
LDB2 LIM domain binding 2 1.53648
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 1.53547
SACK1G scaffolding CK1 anchoring protein G 1.53511
MARCH1 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase 1.53465
PEMT phosphatidylethanolamine N-methyltransferase 1.53417
ZNF624 zinc finger protein 624 1.53376
PROM1 prominin 1 1.532
WDR1 WD repeat domain 1 1.53116
FLII flightless I homolog (Drosophila) 1.53038
ALKBH5 AlkB family member 5, RNA demethylase 1.53028
LLGL1 lethal giant larvae homolog 1 (Drosophila) 1.53028
ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 1.53023
MYO15A myosin XVA 1.53022
DRG2 developmentally regulated GTP binding protein 2 1.53012
GID4 GID complex subunit 4 1.52987
AFAP1-AS1 AFAP1 antisense RNA 1 1.5285
AFAP1 actin filament associated protein 1 1.52838
DTHD1 death domain containing 1 1.52587
PSAPL1 prosaposin-like 1 (gene/pseudogene) 1.52542
ALDH3A1 aldehyde dehydrogenase 3 family, member A1 1.52338
SH3TC1 SH3 domain and tetratricopeptide repeats 1 1.52135
KRT17P5 keratin 17 pseudogene 5 1.52127
MIR548I2 microRNA 548i-2 1.51784
FREM3 FRAS1 related extracellular matrix 3 1.51772
SMIM14 small integral membrane protein 14 1.51711
UGDH-AS1 UGDH antisense RNA 1 1.51684
LOC401127 WD repeat domain 5 pseudogene 1.51668
UGDH UDP-glucose 6-dehydrogenase 1.51604
TOP3A topoisomerase (DNA) III alpha 1.51591
FBXW10 F-box and WD repeat domain containing 10 1.51348
TVP23B trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) 1.51343
PTTG2 pituitary tumor-transforming 2 1.51263
GPR78 G protein-coupled receptor 78 1.51187
DUX4L4 double homeobox 4 like 4 1.5112
DRD5 dopamine receptor D5 1.51023
ACOX3 acyl-CoA oxidase 3, pristanoyl 1.50996
TRMT44 tRNA methyltransferase 44 homolog (S. cerevisiae) 1.50976
FOXO3B forkhead box O3B pseudogene 1.5097
PRPSAP2 phosphoribosyl pyrophosphate synthetase-associated protein 2 1.50911
MIR378D1 microRNA 378d-1 1.50828
RAB28 RAB28, member RAS oncogene family 1.50732
HMX1 H6 family homeobox 1 1.50706
LOC650293 seven transmembrane helix receptor 1.50706
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 1.50687
LRRC48 leucine rich repeat containing 48 1.50647
LOC285484 uncharacterized LOC285484 1.50587
WFS1 Wolfram syndrome 1 (wolframin) 1.50587
JAKMIP1 janus kinase and microtubule interacting protein 1 1.50577
PLD6 phospholipase D family, member 6 1.50564
COPS3 COP9 signalosome subunit 3 1.50545
LIAS lipoic acid synthetase 1.50441
RPL9 ribosomal protein L9 1.50424
ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 1.50394
SLC5A10 solute carrier family 5 (sodium/sugar cotransporter), member 10 1.50346
LINC01587 long intergenic non-protein coding RNA 1587 1.50005
EVC2 Ellis van Creveld syndrome 2 1.4997
SLC47A2 solute carrier family 47 (multidrug and toxin extrusion), member 2 1.49942
ALDH3A2 aldehyde dehydrogenase 3 family, member A2 1.49907
ULK2 unc-51 like autophagy activating kinase 2 1.49697
TMEM156 transmembrane protein 156 1.49687
MIR574 microRNA 574 1.49667
KLHL5 kelch-like family member 5 1.49657
FAM114A1 family with sequence similarity 114, member A1 1.49648
PDGFC platelet derived growth factor C 1.4963
MSX1 msh homeobox 1 1.49499
CYTL1 cytokine-like 1 1.49499
C4ORF19 chromosome 4 open reading frame 19 1.49185
EVPLL envoplakin-like 1.49168
ABLIM2 actin binding LIM protein family, member 2 1.49149
FLCN folliculin 1.49141
NSG1 neuron specific gene family member 1 1.49117
S100P S100 calcium binding protein P 1.4904
MRFAP1L1 Morf4 family associated protein 1-like 1 1.4904
BLOC1S4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino 1.4904
EVC Ellis van Creveld protein 1.49013
STX18 syntaxin 18 1.4898
ZBTB49 zinc finger and BTB domain containing 49 1.48962
TMEM128 transmembrane protein 128 1.48962
LYAR Ly1 antibody reactive 1.48962
RAI1 retinoic acid induced 1 1.48927
PGM2 phosphoglucomutase 2 1.48799
RELL1 RELT-like 1 1.48789
MRFAP1 Morf4 family associated protein 1 1.48783
MAN2B2 mannosidase, alpha, class 2B, member 2 1.48783
LOC93622 Morf4 family associated protein 1-like 1 pseudogene 1.48783
TBC1D1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 1.48749
CPZ carboxypeptidase Z 1.48665
BOD1L1 biorientation of chromosomes in cell division 1-like 1 1.48661
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 1.48459
RASD1 RAS, dexamethasone-induced 1 1.48436
STX18-AS1 STX18 antisense RNA 1 (head to head) 1.48385
NT5M 5',3'-nucleotidase, mitochondrial 1.48384
MED9 mediator complex subunit 9 1.48358
MAML3 mastermind-like 3 (Drosophila) 1.48125
MPRIP myosin phosphatase Rho interacting protein 1.48097
TRIM16L tripartite motif containing 16-like 1.48084
WDR19 WD repeat domain 19 1.48064
TNFRSF13B tumor necrosis factor receptor superfamily, member 13B 1.48032
KLB klotho beta 1.47987
RFC1 replication factor C (activator 1) 1, 145kDa 1.4795
ZNF286B zinc finger protein 286B 1.47836
FRG2 FSHD region gene 2 1.47822
UBE2K ubiquitin-conjugating enzyme E2K 1.47818
LGI2 leucine-rich repeat LGI family, member 2 1.47663
SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 1.47624
SEPSECS-AS1 SEPSECS antisense RNA 1 (head to head) 1.47609
CCDC149 coiled-coil domain containing 149 1.4758
MIR4274 microRNA 4274 1.47547
GYPE glycophorin E (MNS blood group) 1.47537
KLF3-AS1 KLF3 antisense RNA 1 1.47337
KLF3 Kruppel-like factor 3 (basic) 1.47326
TBC1D28 TBC1 domain family, member 28 1.47322
TLR1 toll-like receptor 1 1.47308
TLR6 toll-like receptor 6 1.47308
TLR10 toll-like receptor 10 1.47305
PHOX2B paired-like homeobox 2b 1.47246
MIR573 microRNA 573 1.46961
LOC100505912 uncharacterized LOC100505912 1.46933
MIR4275 microRNA 4275 1.46675
OTOP1 otopetrin 1 1.46654
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 1.46329
CRMP1 collapsin response mediator protein 1 1.46116
EPN2-IT1 EPN2 intronic transcript 1 1.46076
EPN2-AS1 EPN2 antisense RNA 1 1.46076
SLC47A1 solute carrier family 47 (multidrug and toxin extrusion), member 1 1.46069
SMIM20 small integral membrane protein 20 1.46005
TBC1D19 TBC1 domain family, member 19 1.46005
STIM2 stromal interaction molecule 2 1.45979
LAP3 leucine aminopeptidase 3 1.45732
SOD3 superoxide dismutase 3, extracellular 1.45693
PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 1.45678
PI4K2B phosphatidylinositol 4-kinase type 2 beta 1.45589
SLIT2-IT1 SLIT2 intronic transcript 1 1.45445
MIR4801 microRNA 4801 1.45283
NWD2 NACHT and WD repeat domain containing 2 1.45211
KIAA0232 KIAA0232 1.45061
KCNIP4-IT1 KCNIP4 intronic transcript 1 1.44815
C17ORF51 chromosome 17 open reading frame 51 1.44684
FAM106A family with sequence similarity 106, member A 1.44576
USP17L30 ubiquitin specific peptidase 17-like family member 30 1.44563
USP17L6P ubiquitin specific peptidase 17-like family member 6, pseudogene 1.44563
USP17L19 ubiquitin specific peptidase 17-like family member 19 1.44563
USP17L29 ubiquitin specific peptidase 17-like family member 29 1.44563
USP17L24 ubiquitin specific peptidase 17-like family member 24 1.44563
USP17L28 ubiquitin specific peptidase 17-like family member 28 1.44563
USP17L22 ubiquitin specific peptidase 17-like family member 22 1.44563
USP17L20 ubiquitin specific peptidase 17-like family member 20 1.44563
USP17L18 ubiquitin specific peptidase 17-like family member 18 1.44563
USP17L10 ubiquitin specific peptidase 17-like family member 10 1.44563
USP17L12 ubiquitin specific peptidase 17-like family member 12 1.44563
USP17L13 ubiquitin specific peptidase 17-like family member 13 1.44563
USP17L25 ubiquitin specific peptidase 17-like family member 25 1.44563
USP17L17 ubiquitin specific peptidase 17-like family member 17 1.44563
USP17L15 ubiquitin specific peptidase 17-like family member 15 1.44563
USP17L21 ubiquitin specific peptidase 17-like family member 21 1.44563
USP17L5 ubiquitin specific peptidase 17-like family member 5 1.44563
USP17L27 ubiquitin specific peptidase 17-like family member 27 1.44563
USP17L26 ubiquitin specific peptidase 17-like family member 26 1.44563
USP17L9P ubiquitin specific peptidase 17-like family member 9, pseudogene 1.44563
USP17L11 ubiquitin specific peptidase 17-like family member 11 1.44563
GBA3 glucosidase, beta, acid 3 (gene/pseudogene) 1.44283
ADGRA3 adhesion G protein-coupled receptor A3 1.44236
RNF112 ring finger protein 112 1.442
B9D1 B9 protein domain 1 1.44088
MIR1180 microRNA 1180 1.44088
MAPK7 mitogen-activated protein kinase 7 1.44088
MFAP4 microfibrillar-associated protein 4 1.44088
GYPB glycophorin B (MNS blood group) 1.43945
CCKAR cholecystokinin A receptor 1.43918
RBPJ recombination signal binding protein for immunoglobulin kappa J region 1.4388
SEL1L3 sel-1 suppressor of lin-12-like 3 (C. elegans) 1.43843
ANAPC4 anaphase promoting complex subunit 4 1.4379
SHISA3 shisa family member 3 1.43756
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 1.43429
EPN2 epsin 2 1.42882
PACRGL PARK2 co-regulated-like 1.4288
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 1.42822
MIR218-1 microRNA 218-1 1.42375
ALPP alkaline phosphatase, placental 1.42331
LIMCH1 LIM and calponin homology domains 1 1.42244
CCDC144B coiled-coil domain containing 144B (pseudogene) 1.42183
ZCCHC4 zinc finger, CCHC domain containing 4 1.41832
SLC34A2 solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 1.41793
BEND4 BEN domain containing 4 1.41717
DCAF4L1 DDB1 and CUL4 associated factor 4-like 1 1.41319
SLC30A9 solute carrier family 30 (zinc transporter), member 9 1.41313
DANCR differentiation antagonizing non-protein coding RNA 1.41312
MIR4449 microRNA 4449 1.41312
SNORA26 small nucleolar RNA, H/ACA box 26 1.41312
ERVMER34-1 endogenous retrovirus group MER34, member 1 1.41304
TMEM33 transmembrane protein 33 1.41273
GRAP GRB2-related adaptor protein 1.40979
FSTL5 follistatin-like 5 1.40862
UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 1.40854
CFAP99 cilia and flagella associated protein 99 1.40778
SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 1.40686
LRRC66 leucine rich repeat containing 66 1.40593
LOC152578 uncharacterized LOC152578 1.40534
RASL11B RAS-like, family 11, member B 1.40505
SORCS2 sortilin-related VPS10 domain containing receptor 2 1.40456
RNF4 ring finger protein 4 1.40335
LRPAP1 low density lipoprotein receptor-related protein associated protein 1 1.39942
PRIMPOL primase and polymerase (DNA-directed) 1.39758
MFSD10 major facilitator superfamily domain containing 10 1.3957
ADD1 adducin 1 (alpha) 1.39561
NOP14 NOP14 nucleolar protein 1.39561
NOP14-AS1 NOP14 antisense RNA 1 1.39561
HTT-AS HTT antisense RNA (head to head) 1.39552
LOC100133461 uncharacterized LOC100133461 1.39517
GRK4 G protein-coupled receptor kinase 4 1.39517
ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 1.39515
HAUS3 HAUS augmin-like complex, subunit 3 1.38816
MXD4 MAX dimerization protein 4 1.38816
MIR4800 microRNA 4800 1.38816
ZFYVE28 zinc finger, FYVE domain containing 28 1.38812
LINC00662 long intergenic non-protein coding RNA 662 1.38802
SPATA18 spermatogenesis associated 18 1.38687
DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 1.38674
HGFAC HGF activator 1.3865
LINC00955 long intergenic non-protein coding RNA 955 1.38424
TNIP2 TNFAIP3 interacting protein 2 1.38419
ADRA2C adrenoceptor alpha 2C 1.38166
PPAT phosphoribosyl pyrophosphate amidotransferase 1.37934
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 1.3793
ARL9 ADP-ribosylation factor-like 9 1.37926
SRP72 signal recognition particle 72kDa 1.3792
USP46 ubiquitin specific peptidase 46 1.37891
LGALS9C lectin, galactoside-binding, soluble, 9C 1.37872
LINC01060 long intergenic non-protein coding RNA 1060 1.37711
USP32P2 ubiquitin specific peptidase 32 pseudogene 2 1.37609
TMED11P transmembrane emp24 protein transport domain containing 11, pseudogene 1.36793
RNF212 ring finger protein 212 1.36791
GYPA glycophorin A (MNS blood group) 1.36697
AASDH aminoadipate-semialdehyde dehydrogenase 1.36563
SH3BP2 SH3-domain binding protein 2 1.36547
DEFB131 defensin, beta 131 1.36515
FAM193A family with sequence similarity 193, member A 1.36495
CTBP1-AS2 CTBP1 antisense RNA 2 (head to head) 1.36382
LOC100130872 uncharacterized LOC100130872 1.36352
CTBP1 C-terminal binding protein 1 1.3635
MSANTD1 Myb/SANT-like DNA-binding domain containing 1 1.36338
THEGL theg spermatid protein-like 1.36073
GAB1 GRB2-associated binding protein 1 1.36029
HTT huntingtin 1.35966
DOK7 docking protein 7 1.35782
SPON2 spondin 2, extracellular matrix protein 1.35483
TMEM175 transmembrane protein 175 1.35389
GAK cyclin G associated kinase 1.35373
IDUA iduronidase, alpha-L- 1.35007
DGKQ diacylglycerol kinase, theta 110kDa 1.34961
PCDH7 protocadherin 7 1.34715
UVSSA UV-stimulated scaffold protein A 1.34585
CRIPAK cysteine-rich PAK1 inhibitor 1.34559
STK32B serine/threonine kinase 32B 1.34447
FAM86EP family with sequence similarity 86, member A pseudogene 1.34043
REST RE1-silencing transcription factor 1.33969
KCNG2 potassium channel, voltage gated modifier subfamily G, member 2 1.3359
PQLC1 PQ loop repeat containing 1 1.33499
HSBP1L1 heat shock factor binding protein 1-like 1 1.3349
TXNL4A thioredoxin-like 4A 1.3349
ATP5I ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E 1.33458
FGFRL1 fibroblast growth factor receptor-like 1 1.33257
SLC26A1 solute carrier family 26 (anion exchanger), member 1 1.33254
PIGG phosphatidylinositol glycan anchor biosynthesis, class G 1.33092

low copy number

Symbol Name Standardized Value
MESP2 mesoderm posterior basic helix-loop-helix transcription factor 2 -3.21049
ARHGAP5 Rho GTPase activating protein 5 -3.21049
ANPEP alanyl (membrane) aminopeptidase -3.21049
NTNG1 netrin G1 -3.21049
RCBTB2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 -3.21048
POLR2J3 polymerase (RNA) II (DNA directed) polypeptide J3 -3.12759
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D -3.08677
UPK3BL uroplakin 3B-like -3.03219
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2 -3.0251
RASA4 RAS p21 protein activator 4 -3.01865
SPDYE2 speedy/RINGO cell cycle regulator family member E2 -2.99968
SPDYE2B speedy/RINGO cell cycle regulator family member E2B -2.99968
OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 -2.6371
TEX28 testis expressed 28 -2.6371
OPN1MW opsin 1 (cone pigments), medium-wave-sensitive -2.6371
BRD3 bromodomain containing 3 -2.59447
SEC11C SEC11 homolog C (S. cerevisiae) -2.59447
LPAR6 lysophosphatidic acid receptor 6 -2.53023
FAM21C family with sequence similarity 21, member C -2.45479
AGAP4 ArfGAP with GTPase domain, ankyrin repeat and PH domain 4 -2.45388
SRP19 signal recognition particle 19kDa -2.40136
RFPL4A ret finger protein-like 4A -2.36593
MIR1233-1 microRNA 1233-1 -2.35983
MIR1233-2 microRNA 1233-2 -2.35983
REEP5 receptor accessory protein 5 -2.23321
FXN frataxin -2.23064
SLC38A10 solute carrier family 38, member 10 -2.20313
LINC00930 long intergenic non-protein coding RNA 930 -2.20312
MAP3K5 mitogen-activated protein kinase kinase kinase 5 -2.20312
FGFR2 fibroblast growth factor receptor 2 -2.18187
TUBA3E tubulin, alpha 3e -2.14359
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -2.1036
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A -2.07029
ANKRD36B ankyrin repeat domain 36B -1.97212
LOC729737 uncharacterized LOC729737 -1.93508
JMJD1C jumonji domain containing 1C -1.89798
ADGRL3 adhesion G protein-coupled receptor L3 -1.86305
AKR1C6P aldo-keto reductase family 1, member C6, pseudogene -1.8593
KIAA1429 KIAA1429 -1.85781
LMTK2 lemur tyrosine kinase 2 -1.8147
FFAR3 free fatty acid receptor 3 -1.81205
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 -1.79994
ADAMTSL3 ADAMTS-like 3 -1.79046
LOC150776 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene -1.759
TMEM132B transmembrane protein 132B -1.74678
RB1 retinoblastoma 1 -1.72938
SPANXA2-OT1 SPANXA2 overlapping transcript 1 -1.67737
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -1.64769
BCAS3 breast carcinoma amplified sequence 3 -1.64323
CCDC74B coiled-coil domain containing 74B -1.62388
MED15P9 mediator complex subunit 15 pseudogene 9 -1.62386
ULK4 unc-51 like kinase 4 -1.58867
APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B -1.58208
MYC v-myc avian myelocytomatosis viral oncogene homolog -1.57551
SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) -1.56498
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 -1.5611
APOBEC3A_B APOBEC3A and APOBEC3B deletion hybrid -1.47524
PRKCI protein kinase C, iota -1.44904
LRRC34 leucine rich repeat containing 34 -1.44828
LOC100128164 four and a half LIM domains 1 pseudogene -1.44826
SEC62 SEC62 homolog (S. cerevisiae) -1.44826
SAMD7 sterile alpha motif domain containing 7 -1.44826
ACTRT3 actin-related protein T3 -1.44804
MYNN myoneurin -1.44804
GPR160 G protein-coupled receptor 160 -1.42685
LRRC31 leucine rich repeat containing 31 -1.42632
TERC telomerase RNA component -1.42605
NEGR1 neuronal growth regulator 1 -1.41964
CLDN11 claudin 11 -1.41342
POTEF POTE ankyrin domain family, member F -1.41172
PHC3 polyhomeotic homolog 3 (Drosophila) -1.40875
SKIL SKI-like proto-oncogene -1.40716
LRRIQ4 leucine-rich repeats and IQ motif containing 4 -1.40535
MIR1207 microRNA 1207 -1.3814
POU5F1B POU class 5 homeobox 1B -1.37651
SLC7A14 solute carrier family 7, member 14 -1.3741
MIR1204 microRNA 1204 -1.36541
CASC8 cancer susceptibility candidate 8 (non-protein coding) -1.36508
MIR4663 microRNA 4663 -1.35782
FAM83A-AS1 FAM83A antisense RNA 1 -1.35782
SACK1A scaffolding CK1 anchoring protein A -1.35782
TBC1D31 TBC1 domain family, member 31 -1.35679
FBXO32 F-box protein 32 -1.3563
C8ORF76 chromosome 8 open reading frame 76 -1.35017
ZHX1 zinc fingers and homeoboxes 1 -1.3501
ZHX1-C8ORF76 ZHX1-C8orf76 readthrough -1.35007
MIR1206 microRNA 1206 -1.34427
MIR1208 microRNA 1208 -1.34135
MIR1205 microRNA 1205 -1.34013
WDYHV1 WDYHV motif containing 1 -1.33944
FAM84B family with sequence similarity 84, member B -1.3295
DERL1 derlin 1 -1.32765
MIR569 microRNA 569 -1.32559
SLC2A2 solute carrier family 2 (facilitated glucose transporter), member 2 -1.32549
PCAT1 prostate cancer associated transcript 1 (non-protein coding) -1.32297