Hydroxyurea_COLO 205 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Hydroxyurea perturbation in COLO 205 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Hydroxyurea_COLO 205 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 0.0999196
DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 0.0952344
INTS6 integrator complex subunit 6 0.0937804
VCL vinculin 0.084334
BTBD9 BTB (POZ) domain containing 9 0.0813667
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.0659137
SMAD3 SMAD family member 3 0.0649928
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 0.0587448
ATXN1 ataxin 1 0.058056
TXNIP thioredoxin interacting protein 0.0576237
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 0.0533497
PAN3 PAN3 poly(A) specific ribonuclease subunit 0.0518209
N4BP2L2 NEDD4 binding protein 2-like 2 0.0501853
ZMYM2 zinc finger, MYM-type 2 0.0492541
EGLN3 egl-9 family hypoxia-inducible factor 3 0.0484114
PLSCR2 phospholipid scramblase 2 0.0480965
RAD51B RAD51 paralog B 0.0478899
ZNF292 zinc finger protein 292 0.045953
PTBP3 polypyrimidine tract binding protein 3 0.0452904
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.0450241
FNDC3A fibronectin type III domain containing 3A 0.0444437
LPP LIM domain containing preferred translocation partner in lipoma 0.0415637
VMP1 vacuole membrane protein 1 0.039883
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0398348
ANXA2 annexin A2 0.0397729
RNF43 ring finger protein 43 0.0386196
FNIP1 folliculin interacting protein 1 0.0378574
ZBTB20 zinc finger and BTB domain containing 20 0.0376601
NRIP1 nuclear receptor interacting protein 1 0.0374121
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0360858
DSCAM Down syndrome cell adhesion molecule 0.0352824
ERRFI1 ERBB receptor feedback inhibitor 1 0.0350652
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0349334
GMDS GDP-mannose 4,6-dehydratase 0.0346795
SHB Src homology 2 domain containing adaptor protein B 0.0340597
UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 0.0339473
YAP1 Yes-associated protein 1 0.0338952
UBR2 ubiquitin protein ligase E3 component n-recognin 2 0.0334384
MCTP2 multiple C2 domains, transmembrane 2 0.0332919
PRELID2 PRELI domain containing 2 0.0332564
ANKRD17 ankyrin repeat domain 17 0.0321299
IFNGR1 interferon gamma receptor 1 0.0317799
PTEN phosphatase and tensin homolog 0.0316977
MAP7 microtubule-associated protein 7 0.0303923
EFNB2 ephrin-B2 0.0303045
ARHGAP26 Rho GTPase activating protein 26 0.0298822
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 0.0296727
ARHGAP32 Rho GTPase activating protein 32 0.0293528
SPRED1 sprouty-related, EVH1 domain containing 1 0.0293084
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0292859
ASPH aspartate beta-hydroxylase 0.0290331
RUNX1 runt-related transcription factor 1 0.0288818
PRKCA protein kinase C, alpha 0.0287287
EREG epiregulin 0.0282857
SBF2 SET binding factor 2 0.0281521
ANKRD10 ankyrin repeat domain 10 0.0281052
ITCH itchy E3 ubiquitin protein ligase 0.0275739
ENOX1 ecto-NOX disulfide-thiol exchanger 1 0.0274146
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.02739
AP3B1 adaptor-related protein complex 3, beta 1 subunit 0.0268327
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0268318
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 0.0266872
AKAP13 A kinase (PRKA) anchor protein 13 0.0265944
NCOA3 nuclear receptor coactivator 3 0.0256382
PIBF1 progesterone immunomodulatory binding factor 1 0.0254822
BIRC6 baculoviral IAP repeat containing 6 0.0249215
TBC1D22A TBC1 domain family, member 22A 0.0249167
EXOC4 exocyst complex component 4 0.0249083
MBD5 methyl-CpG binding domain protein 5 0.0247056
GSK3B glycogen synthase kinase 3 beta 0.0246136
SORBS1 sorbin and SH3 domain containing 1 0.0243681
RPS6 ribosomal protein S6 0.0241711
ZSWIM6 zinc finger, SWIM-type containing 6 0.0241395
FOXP1 forkhead box P1 0.0236165
DIAPH3 diaphanous-related formin 3 0.0235136
CPEB4 cytoplasmic polyadenylation element binding protein 4 0.0233102
ITFG1 integrin alpha FG-GAP repeat containing 1 0.0232896
ZDHHC20 zinc finger, DHHC-type containing 20 0.0232303
ARB2A ARB2 cotranscriptional regulator A 0.0231253
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0230615
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0228736
WWOX WW domain containing oxidoreductase 0.0228702
MED13L mediator complex subunit 13-like 0.0225908
AHI1 Abelson helper integration site 1 0.0224271
MBNL1 muscleblind-like splicing regulator 1 0.0223647
KDM6A lysine (K)-specific demethylase 6A 0.0222581
UBAC2 UBA domain containing 2 0.0221988
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.0221175
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.0220926
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 0.0220763
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0220028
PUM1 pumilio RNA-binding family member 1 0.0218662
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0217984
FGD4 FYVE, RhoGEF and PH domain containing 4 0.0217282
METTL15 methyltransferase like 15 0.0216088
TUFT1 tuftelin 1 0.0215996
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0211175
PADI1 peptidyl arginine deiminase, type I 0.0210737
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0206007
FRK fyn-related Src family tyrosine kinase 0.0205672

decreased expression

Symbol Name Standardized Value
B2M beta-2-microglobulin -0.130876
EPSTI1 epithelial stromal interaction 1 (breast) -0.102993
TPT1 tumor protein, translationally-controlled 1 -0.0987198
HLA-B major histocompatibility complex, class I, B -0.091193
LOC102724023 ES1 protein homolog, mitochondrial -0.0899945
LYZ lysozyme -0.0836958
SQSTM1 sequestosome 1 -0.080507
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0745268
PTMA prothymosin, alpha -0.0725308
HLA-E major histocompatibility complex, class I, E -0.0631306
JUN jun proto-oncogene -0.0616853
LMO7 LIM domain 7 -0.0591774
EZR ezrin -0.0540929
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0539778
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0531036
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) -0.0519943
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0516978
ZMYND8 zinc finger, MYND-type containing 8 -0.0508202
EGR1 early growth response 1 -0.0506455
H1-0 H1.0 linker histone -0.0491466
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0489003
ITGA6 integrin, alpha 6 -0.0484075
MX2 MX dynamin-like GTPase 2 -0.0476855
LCN2 lipocalin 2 -0.0472114
IFI6 interferon, alpha-inducible protein 6 -0.0471307
RRBP1 ribosome binding protein 1 -0.0463314
SLC38A1 solute carrier family 38, member 1 -0.0455895
RIGI RNA sensor RIG-I -0.0448061
SPATA13 spermatogenesis associated 13 -0.0434297
PERP PERP, TP53 apoptosis effector -0.0426749
CANX calnexin -0.0426234
TMC5 transmembrane channel-like 5 -0.0424959
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0414114
FTH1 ferritin, heavy polypeptide 1 -0.0413552
NCOA7 nuclear receptor coactivator 7 -0.040896
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0407823
GCLC glutamate-cysteine ligase, catalytic subunit -0.0404908
IFI27 interferon, alpha-inducible protein 27 -0.0383919
TSC22D1 TSC22 domain family, member 1 -0.0380025
TMSB10 thymosin beta 10 -0.037725
WDR45B WD repeat domain 45B -0.0364165
XAF1 XIAP associated factor 1 -0.0364073
MUC20 mucin 20, cell surface associated -0.0362823
LOC112694756 uncharaterized LOC112694756 -0.0360053
FTL ferritin, light polypeptide -0.0357993
EPHB2 EPH receptor B2 -0.0356746
EPCAM epithelial cell adhesion molecule -0.0356638
S100A6 S100 calcium binding protein A6 -0.0346265
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0345837
MUC13 mucin 13, cell surface associated -0.0337072
EPS8 epidermal growth factor receptor pathway substrate 8 -0.033496
IGFBP3 insulin-like growth factor binding protein 3 -0.0328539
ITPKC inositol-trisphosphate 3-kinase C -0.0325456
HLA-A major histocompatibility complex, class I, A -0.0317769
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) -0.0315557
MX1 MX dynamin-like GTPase 1 -0.0314243
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 -0.0310366
IFIH1 interferon induced with helicase C domain 1 -0.0309514
SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 -0.0308993
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0306316
ATF4 activating transcription factor 4 -0.0304302
RPL35A ribosomal protein L35a -0.0303943
ACTG1 actin gamma 1 -0.0302798
TFRC transferrin receptor -0.0291951
ABLIM1 actin binding LIM protein 1 -0.0286279
MT2A metallothionein 2A -0.0279236
APOL1 apolipoprotein L, 1 -0.0278789
UBC ubiquitin C -0.0276483
HLA-C major histocompatibility complex, class I, C -0.0272864
SDCBP2 syndecan binding protein (syntenin) 2 -0.026757
KDM3A lysine (K)-specific demethylase 3A -0.0267245
BLZF1 basic leucine zipper nuclear factor 1 -0.0266781
BTG1 B-cell translocation gene 1, anti-proliferative -0.0260231
EXT1 exostosin glycosyltransferase 1 -0.0257471
IRF1 interferon regulatory factor 1 -0.0255236
EIF1 eukaryotic translation initiation factor 1 -0.0253859
CDHR2 cadherin-related family member 2 -0.0247367
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0244003
BAIAP2L1 BAI1-associated protein 2-like 1 -0.0243882
RPL7L1 ribosomal protein L7-like 1 -0.0243107
OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa -0.0238828
IFITM3 interferon induced transmembrane protein 3 -0.023733
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.023641
CSTB cystatin B (stefin B) -0.0234777
GCC2 GRIP and coiled-coil domain containing 2 -0.0231345
AHNAK AHNAK nucleoprotein -0.0230711
PPP1R15A protein phosphatase 1, regulatory subunit 15A -0.0230019
ANXA4 annexin A4 -0.0227363
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0227036
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0227036
SPDYA speedy/RINGO cell cycle regulator family member A -0.0225155
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0224112
UGDH UDP-glucose 6-dehydrogenase -0.0223905
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0219982
KPNB1 karyopherin (importin) beta 1 -0.0219264
IER2 immediate early response 2 -0.0219105
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta -0.0218448
PGK1 phosphoglycerate kinase 1 -0.0216014
PTPRF protein tyrosine phosphatase, receptor type, F -0.021326
SSH2 slingshot protein phosphatase 2 -0.0211526