Hydroxyurea_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Hydroxyurea perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Hydroxyurea_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
EREG epiregulin 0.110524
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.102597
RPS12 ribosomal protein S12 0.0995352
ZFAND3 zinc finger, AN1-type domain 3 0.096444
ONECUT3 one cut homeobox 3 0.074059
MED13L mediator complex subunit 13-like 0.0672955
S100P S100 calcium binding protein P 0.0669144
AREG amphiregulin 0.0617956
RPS8 ribosomal protein S8 0.0616408
RPL26 ribosomal protein L26 0.0607905
FLNB filamin B, beta 0.0598108
FAM13A family with sequence similarity 13, member A 0.0574379
MON2 MON2 homolog (S. cerevisiae) 0.057084
RPL5 ribosomal protein L5 0.0547983
RPL13A ribosomal protein L13a 0.0540104
ISG15 ISG15 ubiquitin-like modifier 0.0535079
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0533901
SPAG9 sperm associated antigen 9 0.0524211
RPL37A ribosomal protein L37a 0.0522279
KLF5 Kruppel-like factor 5 (intestinal) 0.0505111
MBNL2 muscleblind-like splicing regulator 2 0.0499253
RPS23 ribosomal protein S23 0.0467471
EXT1 exostosin glycosyltransferase 1 0.0466589
RPLP2 ribosomal protein, large, P2 0.0459619
PUM2 pumilio RNA-binding family member 2 0.0458406
GOLGA4 golgin A4 0.0457138
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.045713
ANKRD17 ankyrin repeat domain 17 0.0451083
WSB1 WD repeat and SOCS box containing 1 0.0446491
GRB10 growth factor receptor-bound protein 10 0.0445955
RAP1B RAP1B, member of RAS oncogene family 0.0442457
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.044227
FNDC3A fibronectin type III domain containing 3A 0.0440148
BTBD9 BTB (POZ) domain containing 9 0.0439691
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0439502
COG5 component of oligomeric golgi complex 5 0.0437633
RBM39 RNA binding motif protein 39 0.0436418
RNF145 ring finger protein 145 0.0436151
ANTXR2 anthrax toxin receptor 2 0.0429378
RAB1A RAB1A, member RAS oncogene family 0.0429348
RPS3 ribosomal protein S3 0.0428832
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0427062
B2M beta-2-microglobulin 0.042533
RPL36 ribosomal protein L36 0.0423061
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.041568
ANKRD11 ankyrin repeat domain 11 0.0414089
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0410962
RPS29 ribosomal protein S29 0.0409668
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0408854
PRELID2 PRELI domain containing 2 0.0406736
SEC31A SEC31 homolog A (S. cerevisiae) 0.0405469
ALCAM activated leukocyte cell adhesion molecule 0.0403424
MXD1 MAX dimerization protein 1 0.0402354
ESYT2 extended synaptotagmin-like protein 2 0.0400399
AP3B1 adaptor-related protein complex 3, beta 1 subunit 0.0387511
OGA O-GlcNAcase 0.0386544
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0375666
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0374594
WAC WW domain containing adaptor with coiled-coil 0.0363456
HMGA1 high mobility group AT-hook 1 0.036182
AKAP9 A kinase (PRKA) anchor protein 9 0.035578
TTC3 tetratricopeptide repeat domain 3 0.0349851
RPS17 ribosomal protein S17 0.0349418
KMT2C lysine (K)-specific methyltransferase 2C 0.0342095
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase 0.0339876
BACE2 beta-site APP-cleaving enzyme 2 0.0339582
LPP LIM domain containing preferred translocation partner in lipoma 0.0338884
BIRC6 baculoviral IAP repeat containing 6 0.0338562
RPS2 ribosomal protein S2 0.0338273
FOXO1 forkhead box O1 0.0335519
ESRP1 epithelial splicing regulatory protein 1 0.0335346
SLMAP sarcolemma associated protein 0.0332835
PSME4 proteasome (prosome, macropain) activator subunit 4 0.033109
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0329601
MCTP2 multiple C2 domains, transmembrane 2 0.0326734
GSK3B glycogen synthase kinase 3 beta 0.0325507
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0320139
RPS25 ribosomal protein S25 0.0319435
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0319331
PNISR PNN-interacting serine/arginine-rich protein 0.0317294
ZMYM2 zinc finger, MYM-type 2 0.0316245
PTPRR protein tyrosine phosphatase, receptor type, R 0.0315671
RREB1 ras responsive element binding protein 1 0.031553
ZNF292 zinc finger protein 292 0.0314481
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0311223
KMT2E lysine (K)-specific methyltransferase 2E 0.0310942
NBAS neuroblastoma amplified sequence 0.0306169
VEGFA vascular endothelial growth factor A 0.0300575
FNDC3B fibronectin type III domain containing 3B 0.0297231
RPL31 ribosomal protein L31 0.0296484
SSR1 signal sequence receptor, alpha 0.029111
PARD3 par-3 family cell polarity regulator 0.0290874
BBX bobby sox homolog (Drosophila) 0.0290661
ASCC3 activating signal cointegrator 1 complex subunit 3 0.028522
ZFC3H1 zinc finger, C3H1-type containing 0.0283117
KDM6A lysine (K)-specific demethylase 6A 0.0280671
NCOR1 nuclear receptor corepressor 1 0.028061
LMO7 LIM domain 7 0.0278413
CTNND1 catenin (cadherin-associated protein), delta 1 0.0276099
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.0275618

decreased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.222854
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.180885
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.113126
EZR ezrin -0.104969
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0958614
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0928028
KRT18 keratin 18, type I -0.0878698
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0824497
FTH1 ferritin, heavy polypeptide 1 -0.0752343
DSPP dentin sialophosphoprotein -0.0696579
AHNAK AHNAK nucleoprotein -0.063488
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0621482
PTMA prothymosin, alpha -0.0609879
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0590566
LOC102724023 ES1 protein homolog, mitochondrial -0.057535
TMSB10 thymosin beta 10 -0.0551025
PDIA3 protein disulfide isomerase family A, member 3 -0.0544188
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0513558
MLEC malectin -0.0499182
CANX calnexin -0.049873
LDHA lactate dehydrogenase A -0.0486492
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.048047
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0476101
ITGA6 integrin, alpha 6 -0.046908
TPM4 tropomyosin 4 -0.0466604
POTEF POTE ankyrin domain family, member F -0.0451708
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0443726
PGK1 phosphoglycerate kinase 1 -0.0440359
EEF2 eukaryotic translation elongation factor 2 -0.0434847
RPS19 ribosomal protein S19 -0.0420164
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0411058
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0402602
LOC112694756 uncharaterized LOC112694756 -0.0390007
H1-0 H1.0 linker histone -0.0377839
RPL35A ribosomal protein L35a -0.0377211
MUC17 mucin 17, cell surface associated -0.0375672
KRT19 keratin 19, type I -0.0375026
S100A6 S100 calcium binding protein A6 -0.0374225
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0373977
YBX1 Y box binding protein 1 -0.0370519
NPSR1 neuropeptide S receptor 1 -0.0366279
MUC6 mucin 6, oligomeric mucus/gel-forming -0.0365775
TXNIP thioredoxin interacting protein -0.0364954
EPCAM epithelial cell adhesion molecule -0.0360025
LGALS4 lectin, galactoside-binding, soluble, 4 -0.0358263
TSC22D1 TSC22 domain family, member 1 -0.0357647
ACTG1 actin gamma 1 -0.0327326
CEMIP cell migration inducing protein, hyaluronan binding -0.0322113
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0316966
JUN jun proto-oncogene -0.0315756
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 -0.0314053
PIGR polymeric immunoglobulin receptor -0.0308745
EGR1 early growth response 1 -0.0306645
PERP PERP, TP53 apoptosis effector -0.0306193
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0304034
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0301656
BCAT1 branched chain amino-acid transaminase 1, cytosolic -0.0300899
INSIG1 insulin induced gene 1 -0.0288992
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0287313
CENPF centromere protein F, 350/400kDa -0.0284902
LGALS3 lectin, galactoside-binding, soluble, 3 -0.0279727
CLDN7 claudin 7 -0.027849
CD46 CD46 molecule, complement regulatory protein -0.0273254
RPLP0 ribosomal protein, large, P0 -0.0267325
MT1X metallothionein 1X -0.0266102
APLP2 amyloid beta (A4) precursor-like protein 2 -0.0263627
GPHN gephyrin -0.0257834
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 -0.0238992
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0237322
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0236445
HILPDA hypoxia inducible lipid droplet-associated -0.0235855
TMBIM6 transmembrane BAX inhibitor motif containing 6 -0.0229765
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.022892
ANXA1 annexin A1 -0.0228012
ENO1 enolase 1, (alpha) -0.0226532
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0223773
RPS14 ribosomal protein S14 -0.0221911
ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B -0.022185
PCM1 pericentriolar material 1 -0.0217871
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase -0.0217862
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0216491
AGR2 anterior gradient 2 -0.0216221
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0214169
ATP5F1B ATP synthase F1 subunit beta -0.0213534
EEF1G eukaryotic translation elongation factor 1 gamma -0.0211643
TFF3 trefoil factor 3 (intestinal) -0.0209644
RPL21 ribosomal protein L21 -0.0206413
DSTN destrin (actin depolymerizing factor) -0.0205816
CDK6 cyclin-dependent kinase 6 -0.0205098
KRT8 keratin 8, type II -0.0200337
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0199599
LDHB lactate dehydrogenase B -0.0194056
LYZ lysozyme -0.0193554
DEK DEK proto-oncogene -0.018915
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0186612
NRN1 neuritin 1 -0.0185069
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0183035
TUBA1B tubulin, alpha 1b -0.0181984
EMP1 epithelial membrane protein 1 -0.018174
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 -0.0175903