Hydroxyurea_NCI-H2122 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Hydroxyurea perturbation in NCI-H2122 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Hydroxyurea_NCI-H2122 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific 0.222732
NALF1 NALCN channel auxiliary factor 1 0.0722191
RPS6 ribosomal protein S6 0.0658317
TENM1 teneurin transmembrane protein 1 0.0590208
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0589181
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0586437
APP amyloid beta (A4) precursor protein 0.0560779
HELZ helicase with zinc finger 0.0541932
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0533069
PRRC2C proline-rich coiled-coil 2C 0.0531446
ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 0.0523287
FAM13A family with sequence similarity 13, member A 0.0509663
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0489997
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 0.0486447
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0477564
MXI1 MAX interactor 1, dimerization protein 0.0469328
SAMD12 sterile alpha motif domain containing 12 0.0436272
NEK7 NIMA-related kinase 7 0.0434734
CD46 CD46 molecule, complement regulatory protein 0.0433966
MBNL2 muscleblind-like splicing regulator 2 0.042724
PFKP phosphofructokinase, platelet 0.0426908
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 0.0423047
NDRG1 N-myc downstream regulated 1 0.0414201
ZNF638 zinc finger protein 638 0.040627
PDE10A phosphodiesterase 10A 0.0400556
VCL vinculin 0.0399461
HILPDA hypoxia inducible lipid droplet-associated 0.0393643
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0388561
NUP58 nucleoporin 58 0.0386281
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0385267
OGA O-GlcNAcase 0.0383259
PGK1 phosphoglycerate kinase 1 0.0378983
TUSC3 tumor suppressor candidate 3 0.0375214
CARD16 caspase recruitment domain family, member 16 0.037443
KRIT1 KRIT1, ankyrin repeat containing 0.0373721
ARHGAP5 Rho GTPase activating protein 5 0.0371319
KIF1B kinesin family member 1B 0.0369838
TMEM39A transmembrane protein 39A 0.0369751
RBM15 RNA binding motif protein 15 0.0368134
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0365605
SCAPER S-phase cyclin A-associated protein in the ER 0.0359687
ITGA6 integrin, alpha 6 0.0354515
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.0351196
PAPOLA poly(A) polymerase alpha 0.0348854
PHIP pleckstrin homology domain interacting protein 0.0348463
IGF2R insulin-like growth factor 2 receptor 0.034778
SEC31A SEC31 homolog A (S. cerevisiae) 0.0337121
H1-0 H1.0 linker histone 0.0336138
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0335924
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0335047
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0330611
PPARD peroxisome proliferator-activated receptor delta 0.0326506
HMGA2 high mobility group AT-hook 2 0.0326332
FLNB filamin B, beta 0.0323083
AHI1 Abelson helper integration site 1 0.0322596
IRS2 insulin receptor substrate 2 0.0320729
PRRC2B proline-rich coiled-coil 2B 0.0312505
MAP1B microtubule-associated protein 1B 0.0310815
RARS1 arginyl-tRNA synthetase 1 0.0310774
H3-3B H3.3 histone B 0.031028
RNMT RNA (guanine-7-) methyltransferase 0.0309756
DARS1 aspartyl-tRNA synthetase 1 0.0307868
DST dystonin 0.0307067
RPL5 ribosomal protein L5 0.0306858
ADAM17 ADAM metallopeptidase domain 17 0.0305537
RUNX1 runt-related transcription factor 1 0.0303162
PCDH7 protocadherin 7 0.0300405
EIF3B eukaryotic translation initiation factor 3, subunit B 0.0298774
TXNIP thioredoxin interacting protein 0.0297537
RAB7A RAB7A, member RAS oncogene family 0.0295308
MIS18BP1 MIS18 binding protein 1 0.0295032
PER2 period circadian clock 2 0.029457
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 0.0294495
NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) 0.0292627
R3HDM1 R3H domain containing 1 0.0291512
ZMYND8 zinc finger, MYND-type containing 8 0.029065
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 0.0290369
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0289479
EXT1 exostosin glycosyltransferase 1 0.0289403
AGO3 argonaute RISC catalytic component 3 0.028937
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0289032
MYO1D myosin ID 0.0284954
XPO1 exportin 1 0.0281709
TAOK1 TAO kinase 1 0.0280624
BTBD9 BTB (POZ) domain containing 9 0.0279132
ICE1 interactor of little elongation complex ELL subunit 1 0.0277977
PTK2 protein tyrosine kinase 2 0.0277484
CD47 CD47 molecule 0.0276856
RPS27A ribosomal protein S27a 0.0276305
ZC3H15 zinc finger CCCH-type containing 15 0.0276168
COPB1 coatomer protein complex, subunit beta 1 0.0273848
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.02713
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0270602
NAP1L4 nucleosome assembly protein 1-like 4 0.0268322
CEP95 centrosomal protein 95kDa 0.0266538
KMT2E lysine (K)-specific methyltransferase 2E 0.0263316
RLF rearranged L-myc fusion 0.0261831
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0261665
CD2AP CD2-associated protein 0.0261161
USP15 ubiquitin specific peptidase 15 0.0258112

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.14056
LAMB3 laminin, beta 3 -0.111678
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.109704
KYNU kynureninase -0.106229
FNDC3B fibronectin type III domain containing 3B -0.0995314
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0962184
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0936739
TXNRD1 thioredoxin reductase 1 -0.093611
KRT17 keratin 17, type I -0.0929762
GRB10 growth factor receptor-bound protein 10 -0.0918367
PARD3 par-3 family cell polarity regulator -0.0803436
LMO7 LIM domain 7 -0.0766975
LAMC2 laminin, gamma 2 -0.0738261
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0703998
CEMIP cell migration inducing protein, hyaluronan binding -0.0695705
PTPRM protein tyrosine phosphatase, receptor type, M -0.0680556
MYO1E myosin IE -0.0660661
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0648405
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.064345
CHD1 chromodomain helicase DNA binding protein 1 -0.064329
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0621559
VIM vimentin -0.0619672
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0612744
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 -0.0608304
ATOSA atos homolog A -0.0604617
EZR ezrin -0.0599864
CD44 CD44 molecule (Indian blood group) -0.0587904
FMNL2 formin-like 2 -0.0587638
BZW1 basic leucine zipper and W2 domains 1 -0.0564699
ENO1 enolase 1, (alpha) -0.0556062
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.055298
TJP1 tight junction protein 1 -0.05465
QKI QKI, KH domain containing, RNA binding -0.0535621
ASPH aspartate beta-hydroxylase -0.0531854
SOD2 superoxide dismutase 2, mitochondrial -0.0530876
SAMD4A sterile alpha motif domain containing 4A -0.0523075
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.051223
AK1 adenylate kinase 1 -0.0502741
CUX1 cut-like homeobox 1 -0.0498266
MUC16 mucin 16, cell surface associated -0.049789
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0497801
MCL1 myeloid cell leukemia 1 -0.0494584
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0491356
TMSB10 thymosin beta 10 -0.0476498
ACTG1 actin gamma 1 -0.0474122
BTG1 B-cell translocation gene 1, anti-proliferative -0.0471161
IGFBP3 insulin-like growth factor binding protein 3 -0.0466656
POTEF POTE ankyrin domain family, member F -0.0466352
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0461741
PATJ PATJ crumbs cell polarity complex component -0.0451664
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0447361
SMAD3 SMAD family member 3 -0.0439534
MAST4 microtubule associated serine/threonine kinase family member 4 -0.0432686
ZBTB20 zinc finger and BTB domain containing 20 -0.0430862
AKAP12 A kinase (PRKA) anchor protein 12 -0.0430185
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.0426543
KLHL24 kelch-like family member 24 -0.0423552
SBF2 SET binding factor 2 -0.0415618
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0408117
TNPO1 transportin 1 -0.0405449
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0404527
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0403673
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0399136
ZMYM2 zinc finger, MYM-type 2 -0.0398272
JUN jun proto-oncogene -0.0389845
SVIL supervillin -0.0387645
JUP junction plakoglobin -0.0383267
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0383082
RAI14 retinoic acid induced 14 -0.0378486
KTN1 kinectin 1 (kinesin receptor) -0.03732
RRBP1 ribosome binding protein 1 -0.0372989
RNF145 ring finger protein 145 -0.037101
STRN3 striatin, calmodulin binding protein 3 -0.0369799
KIF13B kinesin family member 13B -0.0368838
MSN moesin -0.0367708
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 -0.0365181
TBC1D22A TBC1 domain family, member 22A -0.0364981
ESYT2 extended synaptotagmin-like protein 2 -0.0360889
UGCG UDP-glucose ceramide glucosyltransferase -0.0360684
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0355814
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 -0.0355549
ANXA2 annexin A2 -0.0354998
OSMR oncostatin M receptor -0.0354745
NCOR2 nuclear receptor corepressor 2 -0.0352525
CYRIB CYFIP related Rac1 interactor B -0.0351682
SETD5 SET domain containing 5 -0.0351175
ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4 -0.0350974
BMAL2 basic helix-loop-helix ARNT like 2 -0.0350631
LSAMP limbic system-associated membrane protein -0.0347796
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0343391
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0343081
IGF2 insulin-like growth factor 2 -0.0342842
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0342267
MED13 mediator complex subunit 13 -0.034038
F3 coagulation factor III (thromboplastin, tissue factor) -0.0338016
RPL31 ribosomal protein L31 -0.0334812
B2M beta-2-microglobulin -0.0333665
DOCK5 dedicator of cytokinesis 5 -0.0333378
NHSL1 NHS-like 1 -0.0331388
DENND4A DENN/MADD domain containing 4A -0.0329927