Hydroxyurea_NCI-H23 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Hydroxyurea perturbation in NCI-H23 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Hydroxyurea_NCI-H23 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.109856
RAD51B RAD51 paralog B 0.109088
TXNRD1 thioredoxin reductase 1 0.0922078
TRIO trio Rho guanine nucleotide exchange factor 0.0876727
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0583949
ZFAND3 zinc finger, AN1-type domain 3 0.0575723
RPL5 ribosomal protein L5 0.0538819
BABAM2 BRISC and BRCA1 A complex member 2 0.0536669
ZNF292 zinc finger protein 292 0.0517584
ANXA5 annexin A5 0.0488716
ZCCHC7 zinc finger, CCHC domain containing 7 0.0480958
WSB1 WD repeat and SOCS box containing 1 0.0469767
ERRFI1 ERBB receptor feedback inhibitor 1 0.0465889
EXOC4 exocyst complex component 4 0.0464785
CMSS1 cms1 ribosomal small subunit homolog (yeast) 0.0447381
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0427714
PUM2 pumilio RNA-binding family member 2 0.0426763
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0424942
BBX bobby sox homolog (Drosophila) 0.0423317
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0422994
TMEM165 transmembrane protein 165 0.041546
MED13L mediator complex subunit 13-like 0.0409188
EML4 echinoderm microtubule associated protein like 4 0.0406046
TBC1D5 TBC1 domain family, member 5 0.0388884
WDR43 WD repeat domain 43 0.0387777
HMGA1 high mobility group AT-hook 1 0.0384368
TNPO3 transportin 3 0.0373237
RAB7A RAB7A, member RAS oncogene family 0.0373148
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 0.0360571
VMP1 vacuole membrane protein 1 0.0358548
ATP13A3 ATPase type 13A3 0.0357539
PARD3 par-3 family cell polarity regulator 0.0354052
SMAD3 SMAD family member 3 0.0352186
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 0.0350556
ANKRD28 ankyrin repeat domain 28 0.0349018
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) 0.0340975
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0331332
RAP1B RAP1B, member of RAS oncogene family 0.032921
AGFG1 ArfGAP with FG repeats 1 0.0327592
MARCHF4 membrane associated ring-CH-type finger 4 0.0327336
TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 0.0322633
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0322553
ANKRD17 ankyrin repeat domain 17 0.0319461
PTEN phosphatase and tensin homolog 0.0309264
KCMF1 potassium channel modulatory factor 1 0.0307885
THSD4 thrombospondin, type I, domain containing 4 0.0302326
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0302003
TBK1 TANK-binding kinase 1 0.030044
RBM25 RNA binding motif protein 25 0.0294171
CAMKMT calmodulin-lysine N-methyltransferase 0.0293654
FAF1 Fas (TNFRSF6) associated factor 1 0.0291583
UBE2H ubiquitin-conjugating enzyme E2H 0.0290169
ZMYM2 zinc finger, MYM-type 2 0.0286064
TAS2R14 taste receptor, type 2, member 14 0.028456
BIRC6 baculoviral IAP repeat containing 6 0.0280319
KMT2E lysine (K)-specific methyltransferase 2E 0.0277881
ARB2A ARB2 cotranscriptional regulator A 0.0275107
PCBP2 poly(rC) binding protein 2 0.0274362
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 0.0271636
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0266307
RTN4 reticulon 4 0.0265697
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0265693
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0264397
PHF21A PHD finger protein 21A 0.0262351
NR6A1 nuclear receptor subfamily 6, group A, member 1 0.0260797
BRAF B-Raf proto-oncogene, serine/threonine kinase 0.0260332
COG5 component of oligomeric golgi complex 5 0.0259465
UBE2K ubiquitin-conjugating enzyme E2K 0.0258117
PA2G4 proliferation-associated 2G4, 38kDa 0.0257399
NCKAP1 NCK-associated protein 1 0.0256614
SRPK2 SRSF protein kinase 2 0.0256489
NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 0.0255967
PALS2 protein associated with LIN7 2, MAGUK p55 family member 0.0253085
WWOX WW domain containing oxidoreductase 0.0251914
RUSC2 RUN and SH3 domain containing 2 0.0251469
PTK2 protein tyrosine kinase 2 0.0251345
UBAP2L ubiquitin associated protein 2-like 0.0250738
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0250673
LGALS12 lectin, galactoside-binding, soluble, 12 0.0247481
KIAA1328 KIAA1328 0.0247328
EGFR epidermal growth factor receptor 0.0247156
CDYL chromodomain protein, Y-like 0.0246616
PHIP pleckstrin homology domain interacting protein 0.0245785
NF1 neurofibromin 1 0.0245685
XPOT exportin, tRNA 0.0245494
FAM168A family with sequence similarity 168, member A 0.024466
HMGA2 high mobility group AT-hook 2 0.0244063
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0243026
NUP58 nucleoporin 58 0.0242783
FMNL2 formin-like 2 0.0242768
SNX9 sorting nexin 9 0.0242205
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 0.0239304
SMC4 structural maintenance of chromosomes 4 0.0237515
RNF38 ring finger protein 38 0.0237489
PRPF8 pre-mRNA processing factor 8 0.0236526
DLG1 discs, large homolog 1 (Drosophila) 0.0236213
WDPCP WD repeat containing planar cell polarity effector 0.0236154
MAPK8 mitogen-activated protein kinase 8 0.0235743
GRAMD1B GRAM domain containing 1B 0.0231903
RFX7 regulatory factor X, 7 0.0231815

decreased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 -0.282201
TFPI2 tissue factor pathway inhibitor 2 -0.148288
YBX3 Y box binding protein 3 -0.129882
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.123661
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0998435
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0892942
CANX calnexin -0.082681
TMSB10 thymosin beta 10 -0.0810101
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0778669
ACTG1 actin gamma 1 -0.063834
KTN1 kinectin 1 (kinesin receptor) -0.0587065
MCL1 myeloid cell leukemia 1 -0.0557891
EEF2 eukaryotic translation elongation factor 2 -0.05545
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0492038
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0481651
GOLGB1 golgin B1 -0.0479046
AHNAK AHNAK nucleoprotein -0.0476475
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 -0.0459123
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0458446
BRD2 bromodomain containing 2 -0.0434575
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0433406
MYH9 myosin, heavy chain 9, non-muscle -0.0432875
TPT1 tumor protein, translationally-controlled 1 -0.0416166
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0410114
KRT18 keratin 18, type I -0.0401481
KDM3A lysine (K)-specific demethylase 3A -0.0389796
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0374573
HLA-B major histocompatibility complex, class I, B -0.0372066
NIPBL Nipped-B homolog (Drosophila) -0.0355547
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0345268
INTS6 integrator complex subunit 6 -0.0344385
H1-0 H1.0 linker histone -0.0344004
CLTC clathrin, heavy chain (Hc) -0.0338215
RPS2 ribosomal protein S2 -0.0337747
LRRC23 leucine rich repeat containing 23 -0.0332853
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 -0.0328606
RPS19 ribosomal protein S19 -0.0321086
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0320384
PDIA4 protein disulfide isomerase family A, member 4 -0.0313374
CHD4 chromodomain helicase DNA binding protein 4 -0.0304986
ELL2 elongation factor, RNA polymerase II, 2 -0.0302784
CAVIN1 caveolae associated protein 1 -0.0295649
PTMA prothymosin, alpha -0.0294208
APLP2 amyloid beta (A4) precursor-like protein 2 -0.0293959
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0288151
WNT2B wingless-type MMTV integration site family, member 2B -0.0288102
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0280517
UBB ubiquitin B -0.0277763
SET SET nuclear proto-oncogene -0.0275604
YBX1 Y box binding protein 1 -0.0269971
DSPP dentin sialophosphoprotein -0.0253128
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0249938
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0248659
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 -0.024712
UBC ubiquitin C -0.0246979
SETX senataxin -0.0246259
EIF1 eukaryotic translation initiation factor 1 -0.0244603
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0241956
MYL12B myosin, light chain 12B, regulatory -0.0239412
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0239106
KIF5B kinesin family member 5B -0.0237903
RPL3 ribosomal protein L3 -0.0237815
RPS27A ribosomal protein S27a -0.0236535
LOC102724023 ES1 protein homolog, mitochondrial -0.0235452
TPM2 tropomyosin 2 (beta) -0.0234253
EGR1 early growth response 1 -0.0230299
G3BP2 GTPase activating protein (SH3 domain) binding protein 2 -0.023015
PDLIM5 PDZ and LIM domain 5 -0.0228779
HSPA8 heat shock 70kDa protein 8 -0.0228368
CDK12 cyclin-dependent kinase 12 -0.0225148
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0223517
NR4A1 nuclear receptor subfamily 4, group A, member 1 -0.0223281
FTL ferritin, light polypeptide -0.0221697
VCL vinculin -0.0218494
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0216601
B2M beta-2-microglobulin -0.0214999
CALR calreticulin -0.0214471
STK4 serine/threonine kinase 4 -0.0213528
CUL4B cullin 4B -0.0210558
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0209875
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0209633
PLEC plectin -0.0207325
DNAH14 dynein, axonemal, heavy chain 14 -0.0207287
SPTAN1 spectrin, alpha, non-erythrocytic 1 -0.0206344
MKI67 marker of proliferation Ki-67 -0.0205322
RIMS2 regulating synaptic membrane exocytosis 2 -0.0203597
IER3 immediate early response 3 -0.0203171
TTC3 tetratricopeptide repeat domain 3 -0.0202639
TPM4 tropomyosin 4 -0.020165
IFI6 interferon, alpha-inducible protein 6 -0.0200866
SEC61G Sec61 gamma subunit -0.0199962
HNRNPK heterogeneous nuclear ribonucleoprotein K -0.0198296
WBP11 WW domain binding protein 11 -0.0195567
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0194282
KDM4B lysine (K)-specific demethylase 4B -0.0193607
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0193341
RPL38 ribosomal protein L38 -0.0193055
GON4L gon-4-like (C. elegans) -0.0191605
ARF1 ADP-ribosylation factor 1 -0.0190985
NCAPD2 non-SMC condensin I complex, subunit D2 -0.0189048