Hydroxyurea_NCI-H596 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Hydroxyurea perturbation in NCI-H596 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Hydroxyurea_NCI-H596 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.366192
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.158928
EIF1 eukaryotic translation initiation factor 1 0.125709
RPS16 ribosomal protein S16 0.106324
PGK1 phosphoglycerate kinase 1 0.106087
EGFR epidermal growth factor receptor 0.102396
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0913792
NDRG1 N-myc downstream regulated 1 0.0812373
RPS6 ribosomal protein S6 0.0790597
RPL37A ribosomal protein L37a 0.0790586
GOLGA4 golgin A4 0.0752553
JMJD1C jumonji domain containing 1C 0.0729162
VIM vimentin 0.0727986
B2M beta-2-microglobulin 0.0676591
TXNRD1 thioredoxin reductase 1 0.0650065
PTMA prothymosin, alpha 0.0645503
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0610166
RPS3 ribosomal protein S3 0.0605236
FTL ferritin, light polypeptide 0.0603675
RAB1A RAB1A, member RAS oncogene family 0.0595538
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0588011
AKAP12 A kinase (PRKA) anchor protein 12 0.0573379
TMSB10 thymosin beta 10 0.0562819
SETD5 SET domain containing 5 0.0521667
LOC112694756 uncharaterized LOC112694756 0.0517458
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0503203
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0499458
IGFBP3 insulin-like growth factor binding protein 3 0.0489803
RPL12 ribosomal protein L12 0.0487704
NOP58 NOP58 ribonucleoprotein 0.0449372
AKAP9 A kinase (PRKA) anchor protein 9 0.0432503
RPS12 ribosomal protein S12 0.0431207
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0428677
PCBP2 poly(rC) binding protein 2 0.0424157
DSCAM Down syndrome cell adhesion molecule 0.0417419
ELL2 elongation factor, RNA polymerase II, 2 0.0413501
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0412534
NAMPT nicotinamide phosphoribosyltransferase 0.0397866
HM13 histocompatibility (minor) 13 0.0388179
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0380911
SPAG9 sperm associated antigen 9 0.0379929
RAB7A RAB7A, member RAS oncogene family 0.0379475
ENO1 enolase 1, (alpha) 0.0379425
CNOT2 CCR4-NOT transcription complex, subunit 2 0.0378624
RAP1B RAP1B, member of RAS oncogene family 0.0372007
RPL34 ribosomal protein L34 0.0370543
NEK7 NIMA-related kinase 7 0.0354607
CEMIP cell migration inducing protein, hyaluronan binding 0.0341121
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0333438
DLG1 discs, large homolog 1 (Drosophila) 0.0327409
ZCCHC7 zinc finger, CCHC domain containing 7 0.0320297
RNF145 ring finger protein 145 0.0310957
SND1 staphylococcal nuclease and tudor domain containing 1 0.0307743
EIF5B eukaryotic translation initiation factor 5B 0.0286038
SUCO SUN domain containing ossification factor 0.0279519
GNAS GNAS complex locus 0.0277466
SEC31A SEC31 homolog A (S. cerevisiae) 0.0277243
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0270797
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.026095
ZFAND3 zinc finger, AN1-type domain 3 0.025098
ZC3H15 zinc finger CCCH-type containing 15 0.0239267
MAP1B microtubule-associated protein 1B 0.0235704
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0234299
KMT2C lysine (K)-specific methyltransferase 2C 0.0232288
INSIG2 insulin induced gene 2 0.022865
ZRANB2 zinc finger, RAN-binding domain containing 2 0.0212123
RACK1 receptor for activated C kinase 1 0.0209849
RBM39 RNA binding motif protein 39 0.0205595
PDPK1 3-phosphoinositide dependent protein kinase 1 0.0205389
ATP13A3 ATPase type 13A3 0.0200039
WWTR1 WW domain containing transcription regulator 1 0.0187883
LDHA lactate dehydrogenase A 0.0180431
CD109 CD109 molecule 0.0177524
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa 0.0170869
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0167911
UGCG UDP-glucose ceramide glucosyltransferase 0.0159989
SEPTIN2 septin 2 0.0159087
CANX calnexin 0.0156481
NPEPPS aminopeptidase puromycin sensitive 0.0151757
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0150166
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.014744
FNBP1L formin binding protein 1-like 0.0147062
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 0.0136862
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0130841
ZSWIM6 zinc finger, SWIM-type containing 6 0.0125099
LRP1B low density lipoprotein receptor-related protein 1B 0.0120069
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0118423
MYO6 myosin VI 0.0117263
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0106449
SEC63 SEC63 homolog (S. cerevisiae) 0.010444
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 0.00967746
DENND4A DENN/MADD domain containing 4A 0.00911636
AFF4 AF4/FMR2 family, member 4 0.00837328
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.00777499
ANKRD28 ankyrin repeat domain 28 0.00776807
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 0.00740993
ARID4B AT rich interactive domain 4B (RBP1-like) 0.00696432
ERRFI1 ERBB receptor feedback inhibitor 1 0.00687137
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 0.00627301
BIRC6 baculoviral IAP repeat containing 6 0.00573648

decreased expression

Symbol Name Standardized Value
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.140122
PSD3 pleckstrin and Sec7 domain containing 3 -0.113226
PDE10A phosphodiesterase 10A -0.101782
VCL vinculin -0.0842817
EFNA5 ephrin-A5 -0.0832234
DOCK4 dedicator of cytokinesis 4 -0.0826683
COL5A2 collagen, type V, alpha 2 -0.0723089
PDE4D phosphodiesterase 4D, cAMP-specific -0.0663593
ARB2A ARB2 cotranscriptional regulator A -0.0642654
PDLIM5 PDZ and LIM domain 5 -0.0634701
FOXP1 forkhead box P1 -0.0632654
EXT1 exostosin glycosyltransferase 1 -0.0608186
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0550331
FNDC3A fibronectin type III domain containing 3A -0.0525468
SMYD3 SET and MYND domain containing 3 -0.0522784
NABP1 nucleic acid binding protein 1 -0.0521861
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0490873
MBD5 methyl-CpG binding domain protein 5 -0.0483784
CUL3 cullin 3 -0.0463943
USP34 ubiquitin specific peptidase 34 -0.0463371
VMP1 vacuole membrane protein 1 -0.0456988
ASPH aspartate beta-hydroxylase -0.0454933
SOX5 SRY (sex determining region Y)-box 5 -0.045053
ARID2 AT rich interactive domain 2 (ARID, RFX-like) -0.0432354
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase -0.0425645
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0417801
MAML2 mastermind-like 2 (Drosophila) -0.0401443
POTEF POTE ankyrin domain family, member F -0.039595
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 -0.0389661
CNKSR3 CNKSR family member 3 -0.0386452
OGA O-GlcNAcase -0.038345
GRB10 growth factor receptor-bound protein 10 -0.0374734
ZC3H11A zinc finger CCCH-type containing 11A -0.036119
PRKCA protein kinase C, alpha -0.0356631
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -0.0356067
LMO7 LIM domain 7 -0.0355545
TNRC6A trinucleotide repeat containing 6A -0.0354112
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0350693
EIF4A2 eukaryotic translation initiation factor 4A2 -0.0349332
ANO6 anoctamin 6 -0.0336777
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0336355
PHIP pleckstrin homology domain interacting protein -0.0334093
CAMTA1 calmodulin binding transcription activator 1 -0.0327503
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0319282
PARD3 par-3 family cell polarity regulator -0.0316972
FLNB filamin B, beta -0.0315327
KIF1B kinesin family member 1B -0.0315162
RAI14 retinoic acid induced 14 -0.0312724
ACTG1 actin gamma 1 -0.0310353
IGF1R insulin-like growth factor 1 receptor -0.0308645
ARHGAP29 Rho GTPase activating protein 29 -0.0300727
WDR43 WD repeat domain 43 -0.0294442
CYRIB CYFIP related Rac1 interactor B -0.0293305
LPP LIM domain containing preferred translocation partner in lipoma -0.0292634
NAP1L1 nucleosome assembly protein 1-like 1 -0.0288674
EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa -0.0288227
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0259621
EXOC6B exocyst complex component 6B -0.025592
USP53 ubiquitin specific peptidase 53 -0.025206
TAS2R14 taste receptor, type 2, member 14 -0.024532
FMNL2 formin-like 2 -0.0243727
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0240657
TARS1 threonyl-tRNA synthetase 1 -0.0238507
CAMKMT calmodulin-lysine N-methyltransferase -0.0237099
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0234638
CD2AP CD2-associated protein -0.0226356
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 -0.0222957
FBXO11 F-box protein 11 -0.0220699
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0214935
DENND4C DENN/MADD domain containing 4C -0.0212878
MYOF myoferlin -0.0212538
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0211275
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0205451
UBXN7 UBX domain protein 7 -0.0201982
EEF1G eukaryotic translation elongation factor 1 gamma -0.020063
KIF5B kinesin family member 5B -0.0197937
MIER1 mesoderm induction early response 1, transcriptional regulator -0.0195113
SSBP2 single-stranded DNA binding protein 2 -0.019502
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 -0.0190644
NUP153 nucleoporin 153kDa -0.0190552
RB1CC1 RB1-inducible coiled-coil 1 -0.0179965
PRRC2C proline-rich coiled-coil 2C -0.0179455
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 -0.0178837
MED13 mediator complex subunit 13 -0.0174415
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0171033
BRD4 bromodomain containing 4 -0.0168624
KIF21A kinesin family member 21A -0.0166228
HP1BP3 heterochromatin protein 1, binding protein 3 -0.0165549
KDM4B lysine (K)-specific demethylase 4B -0.0165015
BRWD1 bromodomain and WD repeat domain containing 1 -0.0161898
PTPRG protein tyrosine phosphatase, receptor type, G -0.0160272
PRPF8 pre-mRNA processing factor 8 -0.0158239
PRELID2 PRELI domain containing 2 -0.0157616
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0149616
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.0146789
CPEB4 cytoplasmic polyadenylation element binding protein 4 -0.0145368
YAP1 Yes-associated protein 1 -0.0144806
HOOK2 hook microtubule-tethering protein 2 -0.0144234
NBAS neuroblastoma amplified sequence -0.0141965
RIGI RNA sensor RIG-I -0.0138786