Idarubicin (hydrochloride)_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Idarubicin (hydrochloride) perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Idarubicin (hydrochloride)_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.115616
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0452308
MT2A metallothionein 2A 0.0350339
TNS1 tensin 1 0.0335262
RPS6 ribosomal protein S6 0.0334655
SVIL supervillin 0.0330035
PCBP2 poly(rC) binding protein 2 0.0262871
FTH1 ferritin, heavy polypeptide 1 0.0260739
BHLHE40 basic helix-loop-helix family, member e40 0.0241859
PRAG1 PEAK1 related, kinase-activating pseudokinase 1 0.0234433
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0225978
NDRG1 N-myc downstream regulated 1 0.0216153
RPS2 ribosomal protein S2 0.0205568
CRY1 cryptochrome circadian clock 1 0.0205216
MYADM myeloid-associated differentiation marker 0.0186781
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.0168985
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.0168373
PGAM4 phosphoglycerate mutase family member 4 0.0165096
FAM13A family with sequence similarity 13, member A 0.0153648
TGFBI transforming growth factor, beta-induced, 68kDa 0.0150541
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.014167
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0141345
EZR ezrin 0.0134172
FBXO42 F-box protein 42 0.013267
NUP58 nucleoporin 58 0.0128943
ANKZF1 ankyrin repeat and zinc finger domain containing 1 0.0126785
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0125843
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0125045
TNIP1 TNFAIP3 interacting protein 1 0.012468
PER2 period circadian clock 2 0.0123314
VIM vimentin 0.0121514
JMY junction mediating and regulatory protein, p53 cofactor 0.0119064
GOLGA4 golgin A4 0.0118032
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0117515
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0116303
RPL4 ribosomal protein L4 0.0115214
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.0112179
DDIT4 DNA-damage-inducible transcript 4 0.0112025
SOS1 son of sevenless homolog 1 (Drosophila) 0.0111343
NFE2L1 nuclear factor, erythroid 2-like 1 0.0110147
PNN pinin, desmosome associated protein 0.0108128
RUNX1 runt-related transcription factor 1 0.0107839
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 0.0107163
CCNL1 cyclin L1 0.0106299
ATF3 activating transcription factor 3 0.0106063
DHFR dihydrofolate reductase 0.0103417
TMF1 TATA element modulatory factor 1 0.0098752
RPL3 ribosomal protein L3 0.00982287
CCN2 cellular communication network factor 2 0.00982133
NCOR2 nuclear receptor corepressor 2 0.00972093
NGLY1 N-glycanase 1 0.00960974
HEG1 heart development protein with EGF-like domains 1 0.00953449
STC2 stanniocalcin 2 0.00952424
BRD2 bromodomain containing 2 0.00946836
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.00945152
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0094097
HSPG2 heparan sulfate proteoglycan 2 0.00939325
BCLAF1 BCL2-associated transcription factor 1 0.00934599
ELL elongation factor RNA polymerase II 0.00933655
TXNRD1 thioredoxin reductase 1 0.00932811
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.00931707
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.00930988
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.00925635
RPL5 ribosomal protein L5 0.00919348
LMCD1 LIM and cysteine-rich domains 1 0.00915989
RNF24 ring finger protein 24 0.0090991
SOX9 SRY (sex determining region Y)-box 9 0.00904413
ARHGAP21 Rho GTPase activating protein 21 0.0089855
LARS1 leucyl-tRNA synthetase 1 0.0089737
ACBD3 acyl-CoA binding domain containing 3 0.00895576
RAB6A RAB6A, member RAS oncogene family 0.00876544
SRRM1 serine/arginine repetitive matrix 1 0.00865864
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.00865142
CEP290 centrosomal protein 290kDa 0.00865047
BRD4 bromodomain containing 4 0.0086266
CDC42BPB CDC42 binding protein kinase beta (DMPK-like) 0.00861528
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.00861183
RASA2 RAS p21 protein activator 2 0.00857537
STK35 serine/threonine kinase 35 0.00848009
KALRN kalirin, RhoGEF kinase 0.0084576
MXRA7 matrix-remodelling associated 7 0.00835069
EGFR epidermal growth factor receptor 0.00827667
CD44 CD44 molecule (Indian blood group) 0.00823409
AKAP13 A kinase (PRKA) anchor protein 13 0.00818723
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.00817776
SF1 splicing factor 1 0.00813757
IL4R interleukin 4 receptor 0.0081334
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 0.00792851
CCND1 cyclin D1 0.00792532
GIGYF2 GRB10 interacting GYF protein 2 0.00791378
TPM3 tropomyosin 3 0.00788525
EFNA5 ephrin-A5 0.00787018
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.00779733
PTPRH protein tyrosine phosphatase, receptor type, H 0.00779678
AAK1 AP2 associated kinase 1 0.00776561
BSDC1 BSD domain containing 1 0.00776275
PML promyelocytic leukemia 0.00776126
SET SET nuclear proto-oncogene 0.00772643
ANGPTL2 angiopoietin-like 2 0.00762649
MSN moesin 0.00761758

decreased expression

Symbol Name Standardized Value
APOB apolipoprotein B -0.192127
FN1 fibronectin 1 -0.189124
GPC3 glypican 3 -0.13279
FNDC3B fibronectin type III domain containing 3B -0.13153
RERE arginine-glutamic acid dipeptide (RE) repeats -0.110731
LRMDA leucine rich melanocyte differentiation associated -0.0996612
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0996022
GPC6 glypican 6 -0.0985657
SLC38A2 solute carrier family 38, member 2 -0.0937645
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0930535
PEG3 paternally expressed 3 -0.0919375
ACSL4 acyl-CoA synthetase long-chain family member 4 -0.0874786
NPAS2 neuronal PAS domain protein 2 -0.087154
TPT1 tumor protein, translationally-controlled 1 -0.0841245
EHBP1 EH domain binding protein 1 -0.0840634
C3 complement component 3 -0.0799371
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0777612
GMDS GDP-mannose 4,6-dehydratase -0.0748534
DLC1 DLC1 Rho GTPase activating protein -0.0720612
ATXN1 ataxin 1 -0.0699764
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0682338
CP ceruloplasmin (ferroxidase) -0.0678317
AHSG alpha-2-HS-glycoprotein -0.0656231
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0642241
RPS24 ribosomal protein S24 -0.0633055
PTPRM protein tyrosine phosphatase, receptor type, M -0.0626833
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0623915
FBF1 Fas (TNFRSF6) binding factor 1 -0.0622858
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0619593
PDLIM5 PDZ and LIM domain 5 -0.0613709
RNF213 ring finger protein 213 -0.0600693
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0599288
ZBTB20 zinc finger and BTB domain containing 20 -0.0583158
ENO1 enolase 1, (alpha) -0.0577002
EML4 echinoderm microtubule associated protein like 4 -0.0573564
EXT1 exostosin glycosyltransferase 1 -0.0572763
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0565195
SAMD4A sterile alpha motif domain containing 4A -0.0562866
ASPH aspartate beta-hydroxylase -0.0557492
DST dystonin -0.0538992
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0538682
SOX5 SRY (sex determining region Y)-box 5 -0.0537805
SDC4 syndecan 4 -0.051571
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0514848
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0512636
TMEM123 transmembrane protein 123 -0.0504425
PHF3 PHD finger protein 3 -0.0492673
FMNL2 formin-like 2 -0.049215
INTS6 integrator complex subunit 6 -0.0487299
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0481615
IGFBP1 insulin-like growth factor binding protein 1 -0.0474049
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0460293
VCL vinculin -0.0454447
TRIM26 tripartite motif containing 26 -0.0452988
NKD1 naked cuticle homolog 1 (Drosophila) -0.0451355
MAN1A1 mannosidase, alpha, class 1A, member 1 -0.0451174
TF transferrin -0.0445113
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0440311
SESTD1 SEC14 and spectrin domains 1 -0.042459
STAU1 staufen double-stranded RNA binding protein 1 -0.0422937
ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 -0.0419565
GNAS GNAS complex locus -0.0413914
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0411298
LPP LIM domain containing preferred translocation partner in lipoma -0.0410156
MSI2 musashi RNA-binding protein 2 -0.0403078
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0395434
RPL23 ribosomal protein L23 -0.0393114
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0391719
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0390325
PTPRK protein tyrosine phosphatase, receptor type, K -0.0390014
LDHA lactate dehydrogenase A -0.0382257
GK glycerol kinase -0.0382031
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0380712
PLIN2 perilipin 2 -0.0374013
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0372505
MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 -0.0372136
PTCHD4 patched domain containing 4 -0.0364616
SOD2 superoxide dismutase 2, mitochondrial -0.0359172
ZHX2 zinc fingers and homeoboxes 2 -0.0354654
IGF2 insulin-like growth factor 2 -0.0353021
KIF21A kinesin family member 21A -0.0346528
ZMYND8 zinc finger, MYND-type containing 8 -0.0345579
TFRC transferrin receptor -0.0345126
DHRS3 dehydrogenase/reductase (SDR family) member 3 -0.0339489
TM4SF1 transmembrane 4 L six family member 1 -0.033835
AGO2 argonaute RISC catalytic component 2 -0.0338138
APOA2 apolipoprotein A-II -0.0335238
MAML2 mastermind-like 2 (Drosophila) -0.0333548
IGF1R insulin-like growth factor 1 receptor -0.0323749
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0322971
A2M alpha-2-macroglobulin -0.0321083
CTSB cathepsin B -0.032054
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0311966
UBR4 ubiquitin protein ligase E3 component n-recognin 4 -0.0310913
RDX radixin -0.0309082
APOE apolipoprotein E -0.030711
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) -0.0306912
FTL ferritin, light polypeptide -0.0303267
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0302259
PRKCA protein kinase C, alpha -0.0302041