Idarubicin (hydrochloride)_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Idarubicin (hydrochloride) perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Idarubicin (hydrochloride)_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0942139
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.056387
KLHL29 kelch-like family member 29 0.0399724
PTPRG protein tyrosine phosphatase, receptor type, G 0.0397019
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0378708
PRKCA protein kinase C, alpha 0.0316036
HDAC4 histone deacetylase 4 0.031079
FBXL7 F-box and leucine-rich repeat protein 7 0.0304696
SERINC5 serine incorporator 5 0.0287872
MAST4 microtubule associated serine/threonine kinase family member 4 0.0276089
TPM3 tropomyosin 3 0.0272667
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0265902
GPHN gephyrin 0.025852
SFTPA2 surfactant protein A2 0.0257337
APLP2 amyloid beta (A4) precursor-like protein 2 0.0255258
NTN1 netrin 1 0.025015
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0249788
ERO1B endoplasmic reticulum oxidoreductase 1 beta 0.0247293
HLA-A major histocompatibility complex, class I, A 0.0240215
FLNA filamin A, alpha 0.0237971
TMEM117 transmembrane protein 117 0.0235768
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.02342
SDK1 sidekick cell adhesion molecule 1 0.0229224
RAB7A RAB7A, member RAS oncogene family 0.0227972
RPS6 ribosomal protein S6 0.0223936
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0223803
NSUN6 NOP2/Sun domain family, member 6 0.0217542
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0213448
MLEC malectin 0.0212807
FLRT2 fibronectin leucine rich transmembrane protein 2 0.0212066
FSTL4 follistatin-like 4 0.0211566
GPC5 glypican 5 0.020757
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0203747
CEMIP2 cell migration inducing hyaluronidase 2 0.0203653
TNRC6C trinucleotide repeat containing 6C 0.0200215
SEPTIN9 septin 9 0.019943
NOPCHAP1 NOP protein chaperone 1 0.0197276
PCDH9 protocadherin 9 0.0195547
HLA-E major histocompatibility complex, class I, E 0.0189515
HLA-B major histocompatibility complex, class I, B 0.0188969
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.0186171
GPATCH2L G patch domain containing 2-like 0.0185934
PCSK5 proprotein convertase subtilisin/kexin type 5 0.0183507
POLH polymerase (DNA directed), eta 0.018249
XYLT1 xylosyltransferase I 0.0181662
ITFG1 integrin alpha FG-GAP repeat containing 1 0.0181181
STC1 stanniocalcin 1 0.0178939
KDM5B lysine (K)-specific demethylase 5B 0.0177306
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.0174267
ANXA4 annexin A4 0.0172203
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 0.0171098
EGR1 early growth response 1 0.0169458
LHFPL6 LHFPL tetraspan subfamily member 6 0.0169439
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0169318
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 0.0169104
SECISBP2 SECIS binding protein 2 0.0168106
ARL15 ADP-ribosylation factor-like 15 0.0167343
LARGE1 LARGE xylosyl- and glucuronyltransferase 1 0.016707
CPEB4 cytoplasmic polyadenylation element binding protein 4 0.0166741
RPS12 ribosomal protein S12 0.0166088
AUTS2 autism susceptibility candidate 2 0.0161719
SLIT2 slit homolog 2 (Drosophila) 0.0159555
AKAP12 A kinase (PRKA) anchor protein 12 0.0159548
KALRN kalirin, RhoGEF kinase 0.0159274
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0157741
PKP4 plakophilin 4 0.0157186
FNIP1 folliculin interacting protein 1 0.0155118
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0154913
LRRC23 leucine rich repeat containing 23 0.0154882
LMNA lamin A/C 0.0153742
KIF26B kinesin family member 26B 0.0151354
INTS6 integrator complex subunit 6 0.0151071
CASZ1 castor zinc finger 1 0.0150986
ACLY ATP citrate lyase 0.0150212
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 0.0149351
LGALS12 lectin, galactoside-binding, soluble, 12 0.0147813
EPHA4 EPH receptor A4 0.0147696
KDM4B lysine (K)-specific demethylase 4B 0.0147638
BBS9 Bardet-Biedl syndrome 9 0.0145503
DGKH diacylglycerol kinase, eta 0.0143611
NFE2L1 nuclear factor, erythroid 2-like 1 0.0143479
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 0.0143246
PTPRK protein tyrosine phosphatase, receptor type, K 0.014072
CUX1 cut-like homeobox 1 0.0139026
PBX3 pre-B-cell leukemia homeobox 3 0.0138215
USP36 ubiquitin specific peptidase 36 0.0137979
ABTB3 ankyrin repeat and BTB domain containing 3 0.0137656
FAM219A family with sequence similarity 219, member A 0.0137354
SYAP1 synapse associated protein 1 0.0137269
HEXIM1 hexamethylene bis-acetamide inducible 1 0.0136365
FGF13 fibroblast growth factor 13 0.0135564
CSNK1G1 casein kinase 1, gamma 1 0.0135458
RANBP17 RAN binding protein 17 0.01352
COL27A1 collagen, type XXVII, alpha 1 0.0135091
ZMAT3 zinc finger, matrin-type 3 0.013446
NCOA1 nuclear receptor coactivator 1 0.0134449
LARP1B La ribonucleoprotein domain family, member 1B 0.013383
TLN1 talin 1 0.0133005
SVIL supervillin 0.0132469
MAP1LC3B microtubule-associated protein 1 light chain 3 beta 0.0132418

decreased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific -0.252975
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) -0.173186
ASPH aspartate beta-hydroxylase -0.165643
EFNA5 ephrin-A5 -0.151804
GDA guanine deaminase -0.131168
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.121644
PSD3 pleckstrin and Sec7 domain containing 3 -0.109471
TXNRD1 thioredoxin reductase 1 -0.103644
COL5A2 collagen, type V, alpha 2 -0.100778
TRIO trio Rho guanine nucleotide exchange factor -0.0915225
NAMPT nicotinamide phosphoribosyltransferase -0.0864781
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0856348
NEK7 NIMA-related kinase 7 -0.0831461
PDLIM5 PDZ and LIM domain 5 -0.0802524
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0795932
MYOF myoferlin -0.0788855
FNDC3B fibronectin type III domain containing 3B -0.0752263
NRCAM neuronal cell adhesion molecule -0.0715096
KYNU kynureninase -0.0676221
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0666597
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.065901
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0635345
COL8A1 collagen, type VIII, alpha 1 -0.0628528
SMYD3 SET and MYND domain containing 3 -0.0623602
EPB41L3 erythrocyte membrane protein band 4.1-like 3 -0.0619638
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.05892
DOCK4 dedicator of cytokinesis 4 -0.0567101
TM4SF1 transmembrane 4 L six family member 1 -0.0559305
DST dystonin -0.0558431
PTMA prothymosin, alpha -0.0554155
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0548889
LIMCH1 LIM and calponin homology domains 1 -0.0535231
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0524109
PDE10A phosphodiesterase 10A -0.0521422
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0520965
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.051919
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0493883
ELL2 elongation factor, RNA polymerase II, 2 -0.0487222
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0486816
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.047914
SLC39A8 solute carrier family 39 (zinc transporter), member 8 -0.0465575
RTN4 reticulon 4 -0.0462815
NT5C2 5'-nucleotidase, cytosolic II -0.0461219
TFPI2 tissue factor pathway inhibitor 2 -0.0452554
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0448754
CTSC cathepsin C -0.0443073
CD109 CD109 molecule -0.0428587
TNPO1 transportin 1 -0.0425166
FTL ferritin, light polypeptide -0.0417871
CDH13 cadherin 13 -0.0409558
TMSB10 thymosin beta 10 -0.0406456
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0403578
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0398008
PALLD palladin, cytoskeletal associated protein -0.0387923
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0386141
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0378624
SPAG9 sperm associated antigen 9 -0.0375538
NPAS2 neuronal PAS domain protein 2 -0.0373998
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0371802
GRAMD1B GRAM domain containing 1B -0.0365217
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0363675
LDHA lactate dehydrogenase A -0.0361591
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.036106
AGFG1 ArfGAP with FG repeats 1 -0.0360327
ZEB2 zinc finger E-box binding homeobox 2 -0.0358965
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0353578
TGFBR1 transforming growth factor, beta receptor 1 -0.0347362
RTN1 reticulon 1 -0.0347161
PGK1 phosphoglycerate kinase 1 -0.0342243
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0341417
MFF mitochondrial fission factor -0.0333555
COL4A5 collagen, type IV, alpha 5 -0.0331377
FLNB filamin B, beta -0.0325236
ACTG1 actin gamma 1 -0.0324726
P3H2 prolyl 3-hydroxylase 2 -0.0320573
BASP1 brain abundant, membrane attached signal protein 1 -0.0310144
RPS24 ribosomal protein S24 -0.0304071
NALF1 NALCN channel auxiliary factor 1 -0.0300275
CENPF centromere protein F, 350/400kDa -0.0296038
PCBP3 poly(rC) binding protein 3 -0.0288148
RBM39 RNA binding motif protein 39 -0.0286586
ENAH enabled homolog (Drosophila) -0.0285412
SH3KBP1 SH3-domain kinase binding protein 1 -0.0284715
NCOA7 nuclear receptor coactivator 7 -0.0276952
ARHGAP29 Rho GTPase activating protein 29 -0.0276446
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0273351
RAB3B RAB3B, member RAS oncogene family -0.0271567
SLC44A1 solute carrier family 44 (choline transporter), member 1 -0.0270823
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 -0.0270387
NF1 neurofibromin 1 -0.0269625
RPL23 ribosomal protein L23 -0.02686
ANXA2 annexin A2 -0.0255728
COL4A6 collagen, type IV, alpha 6 -0.0253674
ANXA1 annexin A1 -0.0252845
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0250688
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 -0.0249144
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.02483
MATR3 matrin 3 -0.0247677
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0247467
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0247014