Idarubicin (hydrochloride)_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Idarubicin (hydrochloride) perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Idarubicin (hydrochloride)_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.1452
FTH1 ferritin, heavy polypeptide 1 0.112079
TGFBI transforming growth factor, beta-induced, 68kDa 0.110978
ERRFI1 ERBB receptor feedback inhibitor 1 0.0962478
NAMPT nicotinamide phosphoribosyltransferase 0.0829414
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0627702
TLN1 talin 1 0.0562967
AKAP12 A kinase (PRKA) anchor protein 12 0.0558844
CXCL8 chemokine (C-X-C motif) ligand 8 0.0537593
RPS6 ribosomal protein S6 0.049414
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0483591
CENPF centromere protein F, 350/400kDa 0.0458875
IL6 interleukin 6 0.045222
HMGA2 high mobility group AT-hook 2 0.0440111
PRRC2C proline-rich coiled-coil 2C 0.0432263
CD44 CD44 molecule (Indian blood group) 0.0421579
MT2A metallothionein 2A 0.0414359
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0409672
ECE1 endothelin converting enzyme 1 0.0409205
COL5A1 collagen, type V, alpha 1 0.0402125
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 0.0399897
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0397629
EXT1 exostosin glycosyltransferase 1 0.0385724
TPT1 tumor protein, translationally-controlled 1 0.0373615
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0369149
TPI1 triosephosphate isomerase 1 0.0363009
LAMB3 laminin, beta 3 0.0359976
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0348384
FLNA filamin A, alpha 0.0342523
ANKRD11 ankyrin repeat domain 11 0.034181
STC2 stanniocalcin 2 0.0335676
RUNX1 runt-related transcription factor 1 0.0333812
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0333346
HIPK2 homeodomain interacting protein kinase 2 0.0321
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0320787
PLAUR plasminogen activator, urokinase receptor 0.0316197
RIN2 Ras and Rab interactor 2 0.0309408
REST RE1-silencing transcription factor 0.0307472
NCOR2 nuclear receptor corepressor 2 0.0302918
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.0300931
EGR1 early growth response 1 0.0295692
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0295586
CEMIP cell migration inducing protein, hyaluronan binding 0.0295358
FGFR1 fibroblast growth factor receptor 1 0.0294745
LOC102724023 ES1 protein homolog, mitochondrial 0.0286211
MCFD2 multiple coagulation factor deficiency 2 0.0285457
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0283084
NCOR1 nuclear receptor corepressor 1 0.028165
MYO9B myosin IXB 0.0276643
RPS12 ribosomal protein S12 0.027646
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0268823
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0268338
CALR calreticulin 0.0268174
COL7A1 collagen, type VII, alpha 1 0.0263164
EREG epiregulin 0.0261042
PTK2 protein tyrosine kinase 2 0.0260494
EHBP1 EH domain binding protein 1 0.0259469
TMEM165 transmembrane protein 165 0.0257512
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0255693
ADNP activity-dependent neuroprotector homeobox 0.0255086
YBX1 Y box binding protein 1 0.0254675
CTSA cathepsin A 0.0254208
BPTF bromodomain PHD finger transcription factor 0.0253635
MAP1B microtubule-associated protein 1B 0.0250928
CEMIP2 cell migration inducing hyaluronidase 2 0.0250434
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0250131
FBXL7 F-box and leucine-rich repeat protein 7 0.0249887
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.0249274
SRPK2 SRSF protein kinase 2 0.0246895
MPRIP myosin phosphatase Rho interacting protein 0.0246697
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0245398
JUN jun proto-oncogene 0.0245353
WNK1 WNK lysine deficient protein kinase 1 0.0243003
RNF213 ring finger protein 213 0.0240332
SMAD3 SMAD family member 3 0.0238325
BAZ1B bromodomain adjacent to zinc finger domain, 1B 0.0237316
MKI67 marker of proliferation Ki-67 0.0236785
SYAP1 synapse associated protein 1 0.0235683
TET2 tet methylcytosine dioxygenase 2 0.0232938
VEGFC vascular endothelial growth factor C 0.0232723
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 0.0232579
DLGAP4 discs, large (Drosophila) homolog-associated protein 4 0.0231766
NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 0.0230846
NCOA6 nuclear receptor coactivator 6 0.022951
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0227769
AMPD3 adenosine monophosphate deaminase 3 0.0226081
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0223672
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0223641
FAM13A family with sequence similarity 13, member A 0.0223426
RPL37A ribosomal protein L37a 0.0222759
TRIOBP TRIO and F-actin binding protein 0.0222301
HSPA8 heat shock 70kDa protein 8 0.0221257
RPS2 ribosomal protein S2 0.0219321
SLC25A51 solute carrier family 25, member 51 0.0218735
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.0218732
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0215472
CA12 carbonic anhydrase XII 0.0214311
CLEC16A C-type lectin domain family 16, member A 0.0213785
SLPI secretory leukocyte peptidase inhibitor 0.0213305
EPAS1 endothelial PAS domain protein 1 0.0212996

decreased expression

Symbol Name Standardized Value
COL6A3 collagen, type VI, alpha 3 -0.29323
IGFBP3 insulin-like growth factor binding protein 3 -0.16912
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.120693
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.10173
CDH13 cadherin 13 -0.0911988
TMSB10 thymosin beta 10 -0.083677
LMAN1 lectin, mannose-binding, 1 -0.0826509
MYOF myoferlin -0.0785108
COL1A2 collagen, type I, alpha 2 -0.0782338
HDLBP high density lipoprotein binding protein -0.0764953
TENT5A terminal nucleotidyltransferase 5A -0.0731967
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0725091
CALU calumenin -0.0714603
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0704951
ELL2 elongation factor, RNA polymerase II, 2 -0.068683
COL1A1 collagen, type I, alpha 1 -0.0685843
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0665781
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0657513
TRIO trio Rho guanine nucleotide exchange factor -0.0620131
SEC31A SEC31 homolog A (S. cerevisiae) -0.0610982
PRRC1 proline-rich coiled-coil 1 -0.058923
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.058855
LDHA lactate dehydrogenase A -0.0584156
NAV1 neuron navigator 1 -0.0582144
FN1 fibronectin 1 -0.0546124
PRSS23 protease, serine, 23 -0.0543351
SEC24D SEC24 family member D -0.0521898
ANKRD17 ankyrin repeat domain 17 -0.0514328
PTGES2 prostaglandin E synthase 2 -0.0508045
VCL vinculin -0.0502906
COPA coatomer protein complex, subunit alpha -0.049611
ANXA2 annexin A2 -0.0493845
SOD2 superoxide dismutase 2, mitochondrial -0.0492265
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0491137
CANX calnexin -0.0484668
PTMA prothymosin, alpha -0.0477244
COG5 component of oligomeric golgi complex 5 -0.047695
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.047368
AHNAK AHNAK nucleoprotein -0.0473068
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.0466896
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0466105
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0441416
RAB1A RAB1A, member RAS oncogene family -0.0438241
F3 coagulation factor III (thromboplastin, tissue factor) -0.0436799
ESYT2 extended synaptotagmin-like protein 2 -0.0435275
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0433809
COL5A2 collagen, type V, alpha 2 -0.0422063
RHEB Ras homolog enriched in brain -0.0406508
ACTG1 actin gamma 1 -0.0406025
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0403619
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.0395325
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0387808
OGA O-GlcNAcase -0.0387778
BIRC6 baculoviral IAP repeat containing 6 -0.038452
PDIA3 protein disulfide isomerase family A, member 3 -0.03839
VIM vimentin -0.0381924
VDAC1 voltage-dependent anion channel 1 -0.0379873
CAV1 caveolin 1, caveolae protein, 22kDa -0.0378003
ZNF292 zinc finger protein 292 -0.0375396
PDIA4 protein disulfide isomerase family A, member 4 -0.0373366
CD109 CD109 molecule -0.0369726
MORF4L2 mortality factor 4 like 2 -0.036579
HLA-C major histocompatibility complex, class I, C -0.0364548
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0362785
SRP54 signal recognition particle 54kDa -0.0361622
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 -0.035705
PSD3 pleckstrin and Sec7 domain containing 3 -0.0356932
RBM39 RNA binding motif protein 39 -0.0353168
HELZ helicase with zinc finger -0.0350205
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) -0.0348598
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.0339893
LOXL2 lysyl oxidase-like 2 -0.0339112
MED13L mediator complex subunit 13-like -0.0336338
SCFD2 sec1 family domain containing 2 -0.0336009
GARS1 glycyl-tRNA synthetase 1 -0.0335621
BSG basigin (Ok blood group) -0.033443
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0332171
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -0.0331006
SDC4 syndecan 4 -0.0328924
NABP1 nucleic acid binding protein 1 -0.0328051
IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase -0.0324318
LOC112694756 uncharaterized LOC112694756 -0.0323848
COL4A2 collagen, type IV, alpha 2 -0.0319387
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0318466
LGALS3 lectin, galactoside-binding, soluble, 3 -0.0318321
MARCHF6 membrane associated ring-CH-type finger 6 -0.0317271
NALF1 NALCN channel auxiliary factor 1 -0.0316826
TFG TRK-fused gene -0.0316702
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -0.0313304
COG6 component of oligomeric golgi complex 6 -0.0309789
TMED9 transmembrane emp24 protein transport domain containing 9 -0.0306501
SLC41A2 solute carrier family 41 (magnesium transporter), member 2 -0.0303708
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 -0.0302816
IARS1 isoleucyl-tRNA synthetase 1 -0.029959
RSRC2 arginine/serine-rich coiled-coil 2 -0.0299348
RAB10 RAB10, member RAS oncogene family -0.0298779
TMEM41B transmembrane protein 41B -0.029787
HBP1 HMG-box transcription factor 1 -0.0293384
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0292065
SUCO SUN domain containing ossification factor -0.029142