K-562 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description Human chronic myeloid leukemia in blast crisis established from the pleural effusion of a 53-year-old woman with chronic myeloid leukemia (CML) in blast crisis in 1970. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000664)
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Genes

149 genes with high or low copy number in K-562 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
QRFP pyroglutamylated RFamide peptide 3.12177
FAM78A family with sequence similarity 78, member A 3.12177
FIBCD1 fibrinogen C domain containing 1 3.12177
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 3.12177
LAMC3 laminin, gamma 3 3.12177
AIF1L allograft inflammatory factor 1-like 3.12177
NUP214 nucleoporin 214kDa 2.93899
TSSK2 testis-specific serine kinase 2 2.76305
SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 2.76305
DGCR11 DiGeorge syndrome critical region gene 11 (non-protein coding) 2.76305
GSC2 goosecoid homeobox 2 2.76305
DGCR14 DiGeorge syndrome critical region gene 14 2.76305
MRPL40 mitochondrial ribosomal protein L40 2.64759
CLDN5 claudin 5 2.64759
CDC45 cell division cycle 45 2.64759
C22ORF39 chromosome 22 open reading frame 39 2.64759
HIRA histone cell cycle regulator 2.64759
UFD1L ubiquitin fusion degradation 1 like (yeast) 2.64759
YPEL1 yippee-like 1 (Drosophila) 2.44392
CCDC116 coiled-coil domain containing 116 2.44392
LINC00895 long intergenic non-protein coding RNA 895 2.44392
YDJC YdjC homolog (bacterial) 2.44392
PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 2.41451
C22ORF29 chromosome 22 open reading frame 29 2.41451
SDF2L1 stromal cell-derived factor 2-like 1 2.41451
SEPT5-GP1BB SEPT5-GP1BB readthrough 2.41451
MIR130B microRNA 130b 2.41451
MIR301B microRNA 301b 2.41451
UBE2L3 ubiquitin-conjugating enzyme E2L 3 2.41451
TBX1 T-box 1 2.41451
GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like 2.41451
LINC00896 long intergenic non-protein coding RNA 896 2.39327
TANGO2 transport and golgi organization 2 homolog (Drosophila) 2.39327
MIR4761 microRNA 4761 2.39327
LOC388849 uncharacterized LOC388849 2.39327
RTN4R reticulon 4 receptor 2.39327
COMT catechol-O-methyltransferase 2.39327
LOC284865 uncharacterized LOC284865 2.39327
MIR1286 microRNA 1286 2.39327
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome 2.39327
MIR185 microRNA 185 2.39327
TXNRD2 thioredoxin reductase 2 2.39327
LINC00410 long intergenic non-protein coding RNA 410 2.36889
DGCR6L DiGeorge syndrome critical region gene 6-like 2.36889
ZDHHC8 zinc finger, DHHC-type containing 8 2.36889
RIMBP3 RIMS binding protein 3 2.36889
USP41 ubiquitin specific peptidase 41 2.36889
MIR3618 microRNA 3618 2.36889
TMEM191C transmembrane protein 191C 2.36889
TRMT2A tRNA methyltransferase 2 homolog A (S. cerevisiae) 2.36889
TMEM191B transmembrane protein 191B 2.36889
PI4KAP2 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 2.36889
RANBP1 RAN binding protein 1 2.36889
PI4KAP1 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 2.36889
DGCR8 DGCR8 microprocessor complex subunit 2.36889
MIR1306 microRNA 1306 2.36889
POM121L8P POM121 transmembrane nucleoporin-like 8 pseudogene 2.35236
HIC2 hypermethylated in cancer 2 2.35236
RIMBP3C RIMS binding protein 3C 2.35236
POM121L7 POM121 transmembrane nucleoporin-like 7 2.3178
GGT2 gamma-glutamyltransferase 2 2.3178
ZNF74 zinc finger protein 74 2.3178
BCRP2 breakpoint cluster region pseudogene 2 2.30944
KLHL22 kelch-like family member 22 2.30944
MED15 mediator complex subunit 15 2.30944
LINC00379 long intergenic non-protein coding RNA 379 2.30944
SCARF2 scavenger receptor class F, member 2 2.30944
MIR19B1 microRNA 19b-1 2.283
SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 2.283
SLC7A4 solute carrier family 7, member 4 2.283
MIR17HG miR-17-92 cluster host gene 2.283
POM121L4P POM121 transmembrane nucleoporin-like 4 pseudogene 2.283
P2RX6P purinergic receptor P2X, ligand gated ion channel, 6 pseudogene 2.283
TMEM191A transmembrane protein 191A (pseudogene) 2.283
SNAP29 synaptosomal-associated protein, 29kDa 2.283
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha 2.283
THAP7-AS1 THAP7 antisense RNA 1 2.26395
LZTR1 leucine-zipper-like transcription regulator 1 2.26395
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like 2.26395
AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 2.26395
P2RX6 purinergic receptor P2X, ligand gated ion channel, 6 2.26395
TUBA3FP tubulin, alpha 3f, pseudogene 2.26395
GPC5 glypican 5 2.26395
THAP7 THAP domain containing 7 2.26395
CCT8L2 chaperonin containing TCP1, subunit 8 (theta)-like 2 2.12484
TPTEP1 transmembrane phosphatase with tensin homology pseudogene 1 2.12484
ANKRD62P1-PARP4P3 ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene 2.12484
XKR3 XK, Kell blood group complex subunit-related family, member 3 2.12439
DGCR9 DiGeorge syndrome critical region gene 9 (non-protein coding) 2.12225
DGCR5 DiGeorge syndrome critical region gene 5 (non-protein coding) 2.12225
DGCR2 DiGeorge syndrome critical region gene 2 2.12225
DGCR10 DiGeorge syndrome critical region gene 10 (non-protein coding) 2.12225
CLTCL1 clathrin, heavy chain-like 1 2.12225
POM121L1P POM121 transmembrane nucleoporin-like 1, pseudogene 2.11506
GGTLC2 gamma-glutamyltransferase light chain 2 2.11506
MIR650 microRNA 650 2.11468
PRAME preferentially expressed antigen in melanoma 2.10607
LOC648691 2.10607
ZNF280A zinc finger protein 280A 2.10597
ZNF280B zinc finger protein 280B 2.10597
FAM155A family with sequence similarity 155, member A 2.10038
IGLL5 immunoglobulin lambda-like polypeptide 5 2.0989
PPM1F protein phosphatase, Mg2+/Mn2+ dependent, 1F 2.09628
FBXW4P1 F-box and WD repeat domain containing 4 pseudogene 1 2.09628
GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide 2.09628
TOP3B topoisomerase (DNA) III beta 2.09628
RSPH14 radial spoke head 14 homolog (Chlamydomonas) 2.09628
RAB36 RAB36, member RAS oncogene family 2.09529
MAPK1 mitogen-activated protein kinase 1 2.09117
LINC00559 long intergenic non-protein coding RNA 559 2.08712
MIR622 microRNA 622 2.08334
GPC6 glypican 6 2.07851
BCR breakpoint cluster region 2.0722

low copy number

Symbol Name Standardized Value
ZRANB1 zinc finger, RAN-binding domain containing 1 -5.12655
MIR4296 microRNA 4296 -5.12655
CTBP2 C-terminal binding protein 2 -5.12655
C10ORF76 chromosome 10 open reading frame 76 -5.12655
DHRS4L1 dehydrogenase/reductase (SDR family) member 4 like 1 -3.0386
DHRS4L2 dehydrogenase/reductase (SDR family) member 4 like 2 -3.03592
DHRS4 dehydrogenase/reductase (SDR family) member 4 -3.03592
MIR876 microRNA 876 -2.84034
MIR873 microRNA 873 -2.83605
SNORA30 small nucleolar RNA, H/ACA box 30 -2.79995
LINGO2 leucine rich repeat and Ig domain containing 2 -2.79933
LOC100506422 putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 -2.79871
TUSC1 tumor suppressor candidate 1 -2.78941
FOCAD focadhesin -2.7828
HACD4 3-hydroxyacyl-CoA dehydratase 4 -2.78237
IFNB1 interferon, beta 1, fibroblast -2.77588
IFNW1 interferon, omega 1 -2.77446
IZUMO3 IZUMO family member 3 -2.77409
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA16 interferon, alpha 16 -2.76453
IFNA17 interferon, alpha 17 -2.76453
IFNA14 interferon, alpha 14 -2.75972
IFNA10 interferon, alpha 10 -2.75972
IFNA7 interferon, alpha 7 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
IFNA5 interferon, alpha 5 -2.74973
ELAVL2 ELAV like neuron-specific RNA binding protein 2 -2.74526
KLHL9 kelch-like family member 9 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
BTNL3 butyrophilin-like 3 -2.72661
IFNE interferon, epsilon -2.72466