KARPAS-299 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

112 genes with high or low copy number in KARPAS-299 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
NTRK1 neurotrophic tyrosine kinase, receptor, type 1 2.64759
LOC100499489 uncharacterized LOC100499489 2.64759
ARMC3 armadillo repeat containing 3 2.64759
CYCSP52 cytochrome c, somatic pseudogene 52 2.64759
ETV3 ets variant 3 2.64759
CD5L CD5 molecule-like 2.64759
SPAG6 sperm associated antigen 6 2.64759
COMMD3-BMI1 COMMD3-BMI1 readthrough 2.64759
MIR765 microRNA 765 2.64759
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 2.64759
FCRL4 Fc receptor-like 4 2.64759
FCRL3 Fc receptor-like 3 2.64759
BMI1 BMI1 proto-oncogene, polycomb ring finger 2.64759
FCRL5 Fc receptor-like 5 2.64759
ETV3L ets variant 3-like 2.64759
ZNF233 zinc finger protein 233 2.64759
LRRC71 leucine rich repeat containing 71 2.64759
ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 2.64759
PEAR1 platelet endothelial aggregation receptor 1 2.64759
FCRL1 Fc receptor-like 1 2.64759
FCRL2 Fc receptor-like 2 2.64759
COMMD3 COMM domain containing 3 2.64759
C10ORF67 chromosome 10 open reading frame 67 2.59653
ZNF235 zinc finger protein 235 2.59653
ZNF285 zinc finger protein 285 2.59653
ZNF180 zinc finger protein 180 2.59653
C10ORF113 chromosome 10 open reading frame 113 2.59653
MSRB2 methionine sulfoxide reductase B2 2.59653
NEBL-AS1 NEBL antisense RNA 1 2.59653
NEBL nebulette 2.59653
ZNF229 zinc finger protein 229 2.59653
PTF1A pancreas specific transcription factor, 1a 2.59653
OTUD1 OTU deubiquitinase 1 2.49065
FLG filaggrin 2.3178
FLG2 filaggrin family member 2 2.3178
S100A10 S100 calcium binding protein A10 2.3178
S100A11 S100 calcium binding protein A11 2.3178
THEM4 thioesterase superfamily member 4 2.30944
TCHH trichohyalin 2.30944
TDRKH tudor and KH domain containing 2.30944
LINGO4 leucine rich repeat and Ig domain containing 4 2.30944
CELF3 CUGBP, Elav-like family member 3 2.30944
RPTN repetin 2.30944
TCHHL1 trichohyalin-like 1 2.30944
C2CD4D C2 calcium-dependent domain containing 4D 2.30944
RIIAD1 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 2.30944
OAZ3 ornithine decarboxylase antizyme 3 2.30944
RORC RAR-related orphan receptor C 2.30944
MRPL9 mitochondrial ribosomal protein L9 2.30944
LOC100132111 uncharacterized LOC100132111 2.30944
THEM5 thioesterase superfamily member 5 2.30944
SNX27 sorting nexin family member 27 2.30944
HRNR hornerin 2.283
C1ORF54 chromosome 1 open reading frame 54 2.25904
APH1A APH1A gamma secretase subunit 2.25904
TUFT1 tuftelin 1 2.25904
ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 2.25904
VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) 2.25904
CGN cingulin 2.25904
CA14 carbonic anhydrase XIV 2.25904
PLEKHO1 pleckstrin homology domain containing, family O member 1 2.25904
MIR554 microRNA 554 2.25904
LYSMD1 LysM, putative peptidoglycan-binding, domain containing 1 2.24845
RFX5 regulatory factor X, 5 (influences HLA class II expression) 2.24845
PRPF3 pre-mRNA processing factor 3 2.24845
SCNM1 sodium channel modifier 1 2.24845
SELENBP1 selenium binding protein 1 2.24845
MRPS21 mitochondrial ribosomal protein S21 2.24845
TIPE2 TNF alpha induced protein 8 like 2 2.24845
TNFAIP8L2-SCNM1 TNFAIP8L2-SCNM1 readthrough 2.24845
CERS2 ceramide synthase 2 2.24139
PI4KB phosphatidylinositol 4-kinase, catalytic, beta 2.24139
PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 2.24139
SETDB1 SET domain, bifurcated 1 2.24139
POGZ pogo transposable element with ZNF domain 2.24139
CDC42SE1 CDC42 small effector 1 2.24139
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 2.24139
PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 2.24139
ZNF687 zinc finger protein 687 2.24139
PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 2.24139
GABPB2 GA binding protein transcription factor, beta subunit 2 2.24139
TMOD4 tropomodulin 4 (muscle) 2.24139
C1ORF56 chromosome 1 open reading frame 56 2.24139
MLLT11 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 2.24139
SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 2.24139
FAM63A family with sequence similarity 63, member A 2.2355
BNIPL BCL2/adenovirus E1B 19kD interacting protein like 2.2355
PRUNE prune exopolyphosphatase 2.2355
ANXA9 annexin A9 2.2355
ARNT aryl hydrocarbon receptor nuclear translocator 2.23324
RPRD2 regulation of nuclear pre-mRNA domain containing 2 2.23324
FALEC focally amplified long non-coding RNA in epithelial cancer 2.23078
CTSS cathepsin S 2.23078
HORMAD1 HORMA domain containing 1 2.23078
ENSA endosulfine alpha 2.23078
ECM1 extracellular matrix protein 1 2.23078
GOLPH3L golgi phosphoprotein 3-like 2.23078
TARS2 threonyl-tRNA synthetase 2, mitochondrial (putative) 2.23078
CTSK cathepsin K 2.23078
MIR4257 microRNA 4257 2.22917
ADAMTSL4 ADAMTS-like 4 2.22917
MCL1 myeloid cell leukemia 1 2.22917
KIAA1217 KIAA1217 2.09529
MIR603 microRNA 603 2.09431
SNORA40 small nucleolar RNA, H/ACA box 40 2.05129

low copy number

Symbol Name Standardized Value
RHD Rh blood group, D antigen -3.17091
TRA T cell receptor alpha locus -2.83328
TRGC2 T cell receptor gamma constant 2 -2.83274
TRAC T cell receptor alpha constant -2.8212
TRDC T cell receptor delta constant -2.80776
TARP TCR gamma alternate reading frame protein -2.79573
CES1P1 carboxylesterase 1 pseudogene 1 -2.74485