KARPAS620 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from haematopoietic_and_lymphoid_tissue (Cancer Cell Line Encyclopedia)
Similar Terms
Downloads & Tools

Genes

125 genes with high or low copy number in KARPAS620 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
USP17L1 ubiquitin specific peptidase 17-like family member 1 2.2756
FAM66B family with sequence similarity 66, member B 2.25996
MIR1226 microRNA 1226 2.24639
TLDC1 TBC/LysM-associated domain containing 1 2.20342
DHX30 DEAH (Asp-Glu-Ala-His) box helicase 30 2.12413
FBXW12 F-box and WD repeat domain containing 12 2.03715
CAMP cathelicidin antimicrobial peptide 2.02166
MIR4443 microRNA 4443 2.0216
TREX1 three prime repair exonuclease 1 2.018
CDC25A cell division cycle 25A 2.01785
TMA7 translation machinery associated 7 homolog (S. cerevisiae) 2.01709
PLXNB1 plexin B1 2.01709
ATRIP ATR interacting protein 2.01709
CCDC51 coiled-coil domain containing 51 2.01709
LOC100132352 FSHD region gene 1 pseudogene 1.98271
ZNF589 zinc finger protein 589 1.96295
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 1.96082
MAP4 microtubule-associated protein 4 1.9586
NME6 NME/NM23 nucleoside diphosphate kinase 6 1.9503
SPINK8 serine peptidase inhibitor, Kazal type 8 (putative) 1.9503
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 1.94286
SHISA5 shisa family member 5 1.87968
TMEM231 transmembrane protein 231 1.8075
CHST5 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 1.76615
CNTNAP2 contactin associated protein-like 2 1.68308
GAS6-AS2 GAS6 antisense RNA 2 (head to head) 1.65455
GAS6 growth arrest-specific 6 1.65204
LINC00565 long intergenic non-protein coding RNA 565 1.62002
LINC00552 long intergenic non-protein coding RNA 552 1.61789
GRK1 G protein-coupled receptor kinase 1 1.61751
TMEM255B transmembrane protein 255B 1.61747
GAS6-AS1 GAS6 antisense RNA 1 1.61743
ATP4B ATPase, H+/K+ exchanging, beta polypeptide 1.61706
CHAMP1 chromosome alignment maintaining phosphoprotein 1 1.61047
SSX6 synovial sarcoma, X breakpoint 6 (pseudogene) 1.60419
TFDP1 transcription factor Dp-1 1.59355
CDC16 cell division cycle 16 1.5687
UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) 1.5685
LAMP1 lysosomal-associated membrane protein 1 1.56437
GRTP1 growth hormone regulated TBC protein 1 1.56437
CUL4A cullin 4A 1.56431
DCUN1D2 DCN1, defective in cullin neddylation 1, domain containing 2 1.56354
TMCO3 transmembrane and coiled-coil domains 3 1.56313
ADPRHL1 ADP-ribosylhydrolase like 1 1.52792
PROZ protein Z, vitamin K-dependent plasma glycoprotein 1.51603
F10 coagulation factor X 1.51579
F7 coagulation factor VII (serum prothrombin conversion accelerator) 1.51579
PCID2 PCI domain containing 2 1.51216
RASA3 RAS p21 protein activator 3 1.47861
SERHL serine hydrolase-like (pseudogene) 1.47462
SPACA5B sperm acrosome associated 5B 1.40488
SPACA5 sperm acrosome associated 5 1.38499
RRP7A ribosomal RNA processing 7 homolog A (S. cerevisiae) 1.37524
MCF2L MCF.2 cell line derived transforming sequence-like 1.3294

low copy number

Symbol Name Standardized Value
SYNC syncoilin, intermediate filament protein -3.21049
RPL34-AS1 RPL34 antisense RNA 1 (head to head) -3.21049
PRSS56 protease, serine, 56 -2.60425
ATP6V0D1 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 -2.59666
CCDC85A coiled-coil domain containing 85A -2.59447
TMEM52B transmembrane protein 52B -2.53314
DAB1 Dab, reelin signal transducer, homolog 1 (Drosophila) -2.41756
LRFN2 leucine rich repeat and fibronectin type III domain containing 2 -2.3514
EDAR ectodysplasin A receptor -2.30446
CACNB2 calcium channel, voltage-dependent, beta 2 subunit -2.26978
KLHL6 kelch-like family member 6 -2.16346
GBP3 guanylate binding protein 3 -2.1579
AMICA1 adhesion molecule, interacts with CXADR antigen 1 -2.08821
SLC15A5 solute carrier family 15, member 5 -1.98907
LPA lipoprotein, Lp(a) -1.98801
SYNE1 spectrin repeat containing, nuclear envelope 1 -1.93253
GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 -1.92896
PPP1R9A protein phosphatase 1, regulatory subunit 9A -1.91689
MIR4417 microRNA 4417 -1.85878
SAXO1 stabilizer of axonemal microtubules 1 -1.76093
NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit -1.76093
SMYD3 SET and MYND domain containing 3 -1.65436
OR2T27 olfactory receptor, family 2, subfamily T, member 27 -1.60584
RUMY4 RUMY family member 4 -1.57564
PPIAL4G peptidylprolyl isomerase A (cyclophilin A)-like 4G -1.57564
ANKRD20A12P ankyrin repeat domain 20 family, member A12, pseudogene -1.57564
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 -1.53963
MIR4441 microRNA 4441 -1.50662
SORCS2 sortilin-related VPS10 domain containing receptor 2 -1.49456
ACTR3BP2 ACTR3B pseudogene 2 -1.4827
FAM133DP family with sequence similarity 133, member A pseudogene -1.47498
FAF1 Fas (TNFRSF6) associated factor 1 -1.4675
VAV2 vav 2 guanine nucleotide exchange factor -1.4608
OXR1 oxidation resistance 1 -1.44666
CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) -1.44448
FAM95A family with sequence similarity 95, member A -1.42383
SLIT3 slit homolog 3 (Drosophila) -1.40733
GGT8P gamma-glutamyltransferase 8 pseudogene -1.40484
ANKRD20A8P ankyrin repeat domain 20 family, member A8, pseudogene -1.40321
LOC442028 uncharacterized LOC442028 -1.39177
TEKT4 tektin 4 -1.39177
MAL mal, T-cell differentiation protein -1.3893
ZNF385D zinc finger protein 385D -1.38866
LOC654342 lymphocyte-specific protein 1 pseudogene -1.38715
KCNIP3 Kv channel interacting protein 3, calsenilin -1.37538
PROM2 prominin 2 -1.37536
ZNF514 zinc finger protein 514 -1.35714
ZNF2 zinc finger protein 2 -1.35714
MRPS5 mitochondrial ribosomal protein S5 -1.35713
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 -1.35585
TRIM43B tripartite motif containing 43B -1.35362
GLIS3 GLIS family zinc finger 3 -1.35315
GRIK2 glutamate receptor, ionotropic, kainate 2 -1.34856
TRIM43 tripartite motif containing 43 -1.34085
FAHD2A fumarylacetoacetate hydrolase domain containing 2A -1.33955
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) -1.3362
CIAO1 cytosolic iron-sulfur assembly component 1 -1.3362
STARD7 StAR-related lipid transfer (START) domain containing 7 -1.3362
TMEM127 transmembrane protein 127 -1.3362
STARD7-AS1 STARD7 antisense RNA 1 -1.3362
ITPRIPL1 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 -1.33619
DUSP2 dual specificity phosphatase 2 -1.33617
ASTL astacin-like metallo-endopeptidase (M12 family) -1.33617
ADRA2B adrenoceptor alpha 2B -1.33615
GPAT2 glycerol-3-phosphate acyltransferase 2, mitochondrial -1.33615
FAHD2CP fumarylacetoacetate hydrolase domain containing 2C, pseudogene -1.3361
BRD9 bromodomain containing 9 -1.33508
LOC1720 dihydrofolate reductase pseudogene -1.32817
NEURL3 neuralized E3 ubiquitin protein ligase 3 -1.32556
ARID5A AT rich interactive domain 5A (MRF1-like) -1.32556
TMSB10 thymosin beta 10 -1.32048