KYSE-140 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, squamous cell (Cell Line Ontology, CLO_0007128)
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Genes

37 genes with high or low copy number in KYSE-140 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
KLHL24 kelch-like family member 24 2.36889
YEATS2 YEATS domain containing 2 2.36889
LINC00888 long intergenic non-protein coding RNA 888 2.35236
KLHL6 kelch-like family member 6 2.35236
B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 2.3178
LAMP3 lysosomal-associated membrane protein 3 2.30944
MCCC1 methylcrotonoyl-CoA carboxylase 1 (alpha) 2.30944
MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2.30944
ATP11B ATPase, class VI, type 11B 2.283
DCUN1D1 DCN1, defective in cullin neddylation 1, domain containing 1 2.283
KRTAP5-7 keratin associated protein 5-7 2.26395
KRTAP5-9 keratin associated protein 5-9 2.26395
KRTAP5-8 keratin associated protein 5-8 2.26395
KRTAP5-11 keratin associated protein 5-11 2.26395
KRTAP5-10 keratin associated protein 5-10 2.25904
NADSYN1 NAD synthetase 1 2.25904
FXR1 fragile X mental retardation, autosomal homolog 1 2.24845
FLJ46066 uncharacterized LOC401103 2.24845
DNAJC19 DnaJ (Hsp40) homolog, subfamily C, member 19 2.24845
FLJ42102 uncharacterized LOC399923 2.24845
DHCR7 7-dehydrocholesterol reductase 2.24845
SHANK2-AS3 SHANK2 antisense RNA 3 2.22291
MIR3664 microRNA 3664 2.22291
FADD Fas (TNFRSF6)-associated via death domain 2.16564
MIR548K microRNA 548k 2.16564
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
CTTN cortactin 2.16307
SOX2-OT SOX2 overlapping transcript 2.06316
SOX2 SRY (sex determining region Y)-box 2 2.06316
SHANK2-AS1 SHANK2 antisense RNA 1 2.05422
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969

low copy number

Symbol Name Standardized Value
FAM47A family with sequence similarity 47, member A -2.87802
PSG6 pregnancy specific beta-1-glycoprotein 6 -2.84243
DMD dystrophin -2.78077
PSG4 pregnancy specific beta-1-glycoprotein 4 -2.75301
LOC284344 uncharacterized LOC284344 -2.74526