KYSE-410 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, squamous cell (Cell Line Ontology, CLO_0007133)
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Genes

152 genes with high or low copy number in KYSE-410 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
PRIM2 primase, DNA, polypeptide 2 (58kDa) 2.93899
LYRM9 LYR motif containing 9 2.93899
NLK nemo-like kinase 2.76305
PYY2 peptide YY, 2 (pseudogene) 2.76305
NOS2 nitric oxide synthase 2, inducible 2.76305
TLCD1 TLC domain containing 1 2.64759
NEK8 NIMA-related kinase 8 2.64759
NARR nine-amino acid residue-repeats 2.64759
TRAF4 TNF receptor-associated factor 4 2.64759
TIAF1 TGFB1-induced anti-apoptotic factor 1 2.64759
PIPOX pipecolic acid oxidase 2.64759
SNORD42B small nucleolar RNA, C/D box 42B 2.64759
PROCA1 protein interacting with cyclin A1 2.64759
RAB34 RAB34, member RAS oncogene family 2.64759
SNORD42A small nucleolar RNA, C/D box 42A 2.64759
SNORD4B small nucleolar RNA, C/D box 4B 2.64759
RPL23A ribosomal protein L23a 2.64759
SNORD4A small nucleolar RNA, C/D box 4A 2.64759
ERAL1 Era-like 12S mitochondrial rRNA chaperone 1 2.59653
MIR451B microRNA 451b 2.59653
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 2.59653
SDF2 stromal cell-derived factor 2 2.59653
DHRS13 dehydrogenase/reductase (SDR family) member 13 2.59653
DGAT2 diacylglycerol O-acyltransferase 2 2.59653
LOC283214 uncharacterized LOC283214 2.59653
SEZ6 seizure related 6 homolog (mouse) 2.59653
MIR144 microRNA 144 2.59653
MIR451A microRNA 451a 2.59653
FLOT2 flotillin 2 2.59653
WNT11 wingless-type MMTV integration site family, member 11 2.59653
MIR4732 microRNA 4732 2.59653
FAM222B family with sequence similarity 222, member B 2.59653
MOGAT2 monoacylglycerol O-acyltransferase 2 2.49065
UVRAG UV radiation resistance associated 2.49065
PHF12 PHD finger protein 12 2.49065
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 2.49065
TBC1D3 TBC1 domain family, member 3 2.49065
LOC441155 zinc finger CCCH-type domain-containing-like 2.49065
MAP6 microtubule-associated protein 6 2.49065
MYO18A myosin XVIIIA 2.49065
LOC440434 aminopeptidase puromycin sensitive pseudogene 2.49065
PTP4A1 protein tyrosine phosphatase type IVA, member 1 2.49065
MRPL45 mitochondrial ribosomal protein L45 2.44392
GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2.44392
PELI3 pellino E3 ubiquitin protein ligase family member 3 2.44392
LOC100131257 zinc finger protein 655 pseudogene 2.44392
MRPL11 mitochondrial ribosomal protein L11 2.44392
GPR179 G protein-coupled receptor 179 2.41451
DPP3 dipeptidyl-peptidase 3 2.41451
C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2.39327
MIOS missing oocyte, meiosis regulator, homolog (Drosophila) 2.35236
RPA3 replication protein A3, 14kDa 2.35236
SRSF6 serine/arginine-rich splicing factor 6 2.3178
L3MBTL1 l(3)mbt-like 1 (Drosophila) 2.3178
COL28A1 collagen, type XXVIII, alpha 1 2.3178
GLCCI1 glucocorticoid induced 1 2.3178
SGK2 serum/glucocorticoid regulated kinase 2 2.3178
MYBL2 v-myb avian myeloblastosis viral oncogene homolog-like 2 2.30944
GTSF1L gametocyte specific factor 1-like 2.30944
IFT52 intraflagellar transport 52 2.30944
NXPH1 neurexophilin 1 2.30944
ICA1 islet cell autoantigen 1, 69kDa 2.30944
TOX2 TOX high mobility group box family member 2 2.283
MED24 mediator complex subunit 24 2.24845
CSF3 colony stimulating factor 3 (granulocyte) 2.24845
SNORD124 small nucleolar RNA, C/D box 124 2.24845
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 2.24845
PER4 period circadian clock 3 pseudogene 2.24139
LRRC3C leucine rich repeat containing 3C 2.23324
GSDMA gasdermin A 2.23324
ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2.23078
GSDMB gasdermin B 2.22793
MRGPRD MAS-related GPR, member D 2.22783
MRGPRF MAS-related GPR, member F 2.22633
CDK12 cyclin-dependent kinase 12 2.22558
ZPBP2 zona pellucida binding protein 2 2.22291
MIR3664 microRNA 3664 2.22291
SHANK2-AS3 SHANK2 antisense RNA 3 2.22291
NEUROD2 neuronal differentiation 2 2.22123
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B 2.21258
TPCN2 two pore segment channel 2 2.21258
STARD3 StAR-related lipid transfer (START) domain containing 3 2.21096
PNMT phenylethanolamine N-methyltransferase 2.20309
TCAP titin-cap 2.20309
MIR4728 microRNA 4728 2.20053
MIEN1 migration and invasion enhancer 1 2.20053
GRB7 growth factor receptor-bound protein 7 2.20053
ERBB2 erb-b2 receptor tyrosine kinase 2 2.20053
PGAP3 post-GPI attachment to proteins 3 2.20053
IKZF3 IKAROS family zinc finger 3 (Aiolos) 2.19863
MIR548K microRNA 548k 2.16564
FADD Fas (TNFRSF6)-associated via death domain 2.16564
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
MYEOV myeloma overexpressed 2.16459
CTTN cortactin 2.16307
FGF3 fibroblast growth factor 3 2.16307
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
FGF4 fibroblast growth factor 4 2.16176
CCND1 cyclin D1 2.1605
FGF19 fibroblast growth factor 19 2.1605
ORAOV1 oral cancer overexpressed 1 2.16017
TRIM29 tripartite motif containing 29 2.14116
OAF OAF homolog (Drosophila) 2.12703
CASP5 caspase 5, apoptosis-related cysteine peptidase 2.10992
CARD18 caspase recruitment domain family, member 18 2.10177
CARD17 caspase recruitment domain family, member 17 2.10177
CASP1 caspase 1, apoptosis-related cysteine peptidase 2.10038
CARD16 caspase recruitment domain family, member 16 2.10038
PHF3 PHD finger protein 3 2.09431
EYS eyes shut homolog (Drosophila) 2.08391
DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5 2.0752
DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 2.0752
BIRC3 baculoviral IAP repeat containing 3 2.07006
YAP1 Yes-associated protein 1 2.07006
BIRC2 baculoviral IAP repeat containing 2 2.07006
TMEM123 transmembrane protein 123 2.06989
C11ORF70 chromosome 11 open reading frame 70 2.06989
SHANK2-AS1 SHANK2 antisense RNA 1 2.05422
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969

low copy number

Symbol Name Standardized Value
BAGE3 B melanoma antigen family, member 3 -3.61078
BAGE B melanoma antigen -3.61078
LOC286083 uncharacterized LOC286083 -3.56449
DLGAP2 discs, large (Drosophila) homolog-associated protein 2 -3.53061
KBTBD11 kelch repeat and BTB (POZ) domain containing 11 -3.53061
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 -3.50611
MYOM2 myomesin 2 -3.50611
ERICH1-AS1 ERICH1 antisense RNA 1 -3.50611
MIR596 microRNA 596 -3.50611
CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) -3.50611
ERICH1 glutamate-rich 1 -3.50611
LINC00290 long intergenic non-protein coding RNA 290 -3.49112
UPK3B uroplakin 3B -3.24687
POMZP3 POM121 and ZP3 fusion -3.24687
LOC100133091 uncharacterized LOC100133091 -3.24687
DPYD dihydropyrimidine dehydrogenase -3.17926
HIST1H2BF histone cluster 1, H2bf -3.05881
HIST1H2AD histone cluster 1, H2ad -3.05881
HIST1H4E histone cluster 1, H4e -3.05881
HIST1H3D histone cluster 1, H3d -3.05881
TEKT4P2 tektin 4 pseudogene 2 -2.9644
OR4F21 olfactory receptor, family 4, subfamily F, member 21 -2.93416
FBXO25 F-box protein 25 -2.93416
TDRP testis development related protein -2.93416
ZNF596 zinc finger protein 596 -2.88947
RPL23AP53 ribosomal protein L23a pseudogene 53 -2.88947
CSMD1 CUB and Sushi multiple domains 1 -2.88947
TPTE transmembrane phosphatase with tensin homology -2.86003
MIR873 microRNA 873 -2.83605
MIR4474 microRNA 4474 -2.81559
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 -2.80776
LINGO2 leucine rich repeat and Ig domain containing 2 -2.79933
HCG4B HLA complex group 4B (non-protein coding) -2.75184