KYSE-450 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, squamous cell (Cell Line Ontology, CLO_0007134)
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Genes

62 genes with high or low copy number in KYSE-450 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
FAM169B family with sequence similarity 169, member B 3.12177
RBM27 RNA binding motif protein 27 2.93899
PRELID2 PRELI domain containing 2 2.76305
FMN2 formin 2 2.76305
RPS7P5 ribosomal protein S7 pseudogene 5 2.76305
GRXCR2 glutaredoxin, cysteine rich 2 2.76305
SH3RF2 SH3 domain containing ring finger 2 2.64759
PLAC8L1 PLAC8-like 1 2.64759
LARS leucyl-tRNA synthetase 2.64759
LOC100130849 phosphorylase kinase, gamma 1 (muscle) pseudogene 2.30944
DKFZP434L192 uncharacterized protein DKFZp434L192 2.283
GUSBP10 glucuronidase, beta pseudogene 10 2.283
LOC650226 ankyrin repeat domain 26 pseudogene 2.283
MIR4283-1 microRNA 4283-1 2.25904
CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) 2.24845
SNORA15 small nucleolar RNA, H/ACA box 15 2.24845
SUMF2 sulfatase modifying factor 2 2.24845
PHKG1 phosphorylase kinase, gamma 1 (muscle) 2.24845
NUPR1L nuclear protein, transcriptional regulator, 1-like 2.24845
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 2.24845
PSPH phosphoserine phosphatase 2.24845
ZNF713 zinc finger protein 713 2.24139
MRPS17 mitochondrial ribosomal protein S17 2.24139
GBAS glioblastoma amplified sequence 2.24139
SEPT14 septin 14 2.2355
SNORA22 small nucleolar RNA, H/ACA box 22 2.23078
VSTM2A V-set and transmembrane domain containing 2A 2.22633
VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2.22123
SEC61G Sec61 gamma subunit 2.21727
LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) 2.21727
EGFR-AS1 EGFR antisense RNA 1 2.21096
EGFR epidermal growth factor receptor 2.20309
HAS2 hyaluronan synthase 2 2.16947
HAS2-AS1 HAS2 antisense RNA 1 2.16947
MIR1206 microRNA 1206 2.07612
ZNF479 zinc finger protein 479 2.0731
MIR1208 microRNA 1208 2.07136
MIR1205 microRNA 1205 2.07136
MIR1207 microRNA 1207 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
POU5F1B POU class 5 homeobox 1B 2.05836
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
MAMLD1 mastermind-like domain containing 1 -5.12655
EPHA2 EPH receptor A2 -3.29865
MTM1 myotubularin 1 -3.24687
CADM1 cell adhesion molecule 1 -3.12964
LINC00900 long intergenic non-protein coding RNA 900 -3.11641
KIAA0825 KIAA0825 -3.05196
ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial -2.89201
CSMD1 CUB and Sushi multiple domains 1 -2.88947
ELAC1 elaC ribonuclease Z 1 -2.86054
HLA-H major histocompatibility complex, class I, H (pseudogene) -2.8504
HLA-J major histocompatibility complex, class I, J (pseudogene) -2.8473
SMAD4 SMAD family member 4 -2.82872
CCSER1 coiled-coil serine-rich protein 1 -2.82606
GSTT1 glutathione S-transferase theta 1 -2.78432
LOC391322 D-dopachrome tautomerase-like -2.78432
GSTTP2 glutathione S-transferase theta pseudogene 2 -2.78432
CNTNAP3B contactin associated protein-like 3B -2.7778
HCG4B HLA complex group 4B (non-protein coding) -2.75184