KYSE-510 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, squamous cell (Cell Line Ontology, CLO_0007135)
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Genes

120 genes with high or low copy number in KYSE-510 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MAPRE2 microtubule-associated protein, RP/EB family, member 2 2.76305
DTNA dystrobrevin, alpha 2.76305
ZNF271P zinc finger protein 271, pseudogene 2.64759
MIR3975 microRNA 3975 2.64759
ZSCAN30 zinc finger and SCAN domain containing 30 2.64759
ZNF24 zinc finger protein 24 2.64759
MIR187 microRNA 187 2.64759
GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 2.64759
ZNF397 zinc finger protein 397 2.64759
INO80C INO80 complex subunit C 2.64759
ZNF396 zinc finger protein 396 2.64759
SLC39A6 solute carrier family 39 (zinc transporter), member 6 2.59653
RPRD1A regulation of nuclear pre-mRNA domain containing 1A 2.59653
ELP2 elongator acetyltransferase complex subunit 2 2.59653
C18ORF21 chromosome 18 open reading frame 21 2.59653
MOCOS molybdenum cofactor sulfurase 2.59653
THOC1 THO complex 1 2.49065
ROCK1P1 Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 2.49065
COLEC12 collectin sub-family member 12 2.49065
USP14 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) 2.49065
LINC00470 long intergenic non-protein coding RNA 470 2.44392
CETN1 centrin, EF-hand protein, 1 2.44392
DLGAP1-AS4 DLGAP1 antisense RNA 4 2.44392
DLGAP1-AS3 DLGAP1 antisense RNA 3 2.44392
ENOSF1 enolase superfamily member 1 2.41451
YES1 YES proto-oncogene 1, Src family tyrosine kinase 2.41451
NDC80 NDC80 kinetochore complex component 2.41451
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 2.41451
CBX3P2 chromobox homolog 3 pseudogene 2 2.41451
CLUL1 clusterin-like 1 (retinal) 2.41451
TYMS thymidylate synthetase 2.41451
METTL4 methyltransferase like 4 2.41451
TGIF1 TGFB-induced factor homeobox 1 2.39327
ADCYAP1 adenylate cyclase activating polypeptide 1 (pituitary) 2.39327
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric 2.39327
MYL12B myosin, light chain 12B, regulatory 2.39327
DLGAP1-AS1 DLGAP1 antisense RNA 1 2.39327
THEG5 testis highly expressed protein 5 2.30944
TSHZ3 teashirt zinc finger homeobox 3 2.283
KRTAP5-9 keratin associated protein 5-9 2.26395
KRTAP5-8 keratin associated protein 5-8 2.26395
KRTAP5-7 keratin associated protein 5-7 2.26395
KRTAP5-11 keratin associated protein 5-11 2.26395
ZNF536 zinc finger protein 536 2.26395
KRTAP5-10 keratin associated protein 5-10 2.25904
NADSYN1 NAD synthetase 1 2.25904
MTL5 metallothionein-like 5, testis-specific (tesmin) 2.24845
FLJ42102 uncharacterized LOC399923 2.24845
DHCR7 7-dehydrocholesterol reductase 2.24845
CPT1A carnitine palmitoyltransferase 1A (liver) 2.24139
MRPL21 mitochondrial ribosomal protein L21 2.23078
IGHMBP2 immunoglobulin mu binding protein 2 2.23078
MRGPRD MAS-related GPR, member D 2.22783
MRGPRF MAS-related GPR, member F 2.22633
RAD21 RAD21 homolog (S. pombe) 2.22558
RAD21-AS1 RAD21 antisense RNA 1 2.22558
MIR3610 microRNA 3610 2.22558
UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast) 2.22558
MIR3664 microRNA 3664 2.22291
SHANK2-AS3 SHANK2 antisense RNA 3 2.22291
AARD alanine and arginine rich domain containing protein 2.22291
EIF3H eukaryotic translation initiation factor 3, subunit H 2.22291
LINC00536 long intergenic non-protein coding RNA 536 2.21727
TPCN2 two pore segment channel 2 2.21258
SLC30A8 solute carrier family 30 (zinc transporter), member 8 2.21258
MED30 mediator complex subunit 30 2.21258
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 2.21096
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b 2.21096
COLEC10 collectin sub-family member 10 (C-type lectin) 2.21096
NOV nephroblastoma overexpressed 2.20309
SAMD12-AS1 SAMD12 antisense RNA 1 2.20309
EXT1 exostosin glycosyltransferase 1 2.20053
SAMD12 sterile alpha motif domain containing 12 2.18778
MIR548K microRNA 548k 2.16564
FADD Fas (TNFRSF6)-associated via death domain 2.16564
SNORA31 small nucleolar RNA, H/ACA box 31 2.16564
MYEOV myeloma overexpressed 2.16459
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 2.16459
CTTN cortactin 2.16307
ANO1 anoctamin 1, calcium activated chloride channel 2.16307
FGF3 fibroblast growth factor 3 2.16307
FGF4 fibroblast growth factor 4 2.16176
CCND1 cyclin D1 2.1605
FGF19 fibroblast growth factor 19 2.1605
ORAOV1 oral cancer overexpressed 1 2.16017
LPIN2 lipin 2 2.09117
DUX4 double homeobox 4 2.09117
LOC727896 cysteine and histidine-rich domain (CHORD) containing 1 pseudogene 2.09117
DLGAP1-AS5 DLGAP1 antisense RNA 5 2.09073
EMILIN2 elastin microfibril interfacer 2 2.09073
MYOM1 myomesin 1 2.08712
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 2.08334
MIR1206 microRNA 1206 2.07612
MIR1208 microRNA 1208 2.07136
MIR1205 microRNA 1205 2.07136
MIR1207 microRNA 1207 2.07136
TMEM75 transmembrane protein 75 2.06401
POU5F1B POU class 5 homeobox 1B 2.05836
TRPS1 trichorhinophalangeal syndrome I 2.05422
SHANK2-AS1 SHANK2 antisense RNA 1 2.05422
SHANK2 SH3 and multiple ankyrin repeat domains 2 2.04969
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
OR2B2 olfactory receptor, family 2, subfamily B, member 2 -3.2703
ZNF444 zinc finger protein 444 -3.14331
ZSCAN5B zinc finger and SCAN domain containing 5B -3.14331
ZSCAN5A zinc finger and SCAN domain containing 5A -3.14331
GALP galanin-like peptide -3.14331
HIST1H2AE histone cluster 1, H2ae -3.12964
HIST1H2BG histone cluster 1, H2bg -3.12964
HIST1H1D histone cluster 1, H1d -3.12964
HIST1H3E histone cluster 1, H3e -3.12964
HIST1H3F histone cluster 1, H3f -3.12964
CFHR4 complement factor H-related 4 -3.08009
ZNF787 zinc finger protein 787 -3.06578
HIST1H2AD histone cluster 1, H2ad -3.05881
HIST1H4E histone cluster 1, H4e -3.05881
HIST1H3D histone cluster 1, H3d -3.05881
HIST1H2BF histone cluster 1, H2bf -3.05881
RUNX1 runt-related transcription factor 1 -3.03082