KYSE-520 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: carcinoma, squamous cell (Cell Line Ontology, CLO_0007136)
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Genes

715 genes with high or low copy number in KYSE-520 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
DEFB127 defensin, beta 127 4.51153
HECW2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 4.51153
C20ORF96 chromosome 20 open reading frame 96 4.51153
TRIB3 tribbles pseudokinase 3 4.51153
DEFB132 defensin, beta 132 4.51153
NRSN2 neurensin 2 4.51153
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 4.51153
SOX12 SRY (sex determining region Y)-box 12 4.51153
TBC1D20 TBC1 domain family, member 20 4.51153
DEFB126 defensin, beta 126 4.51153
ZCCHC3 zinc finger, CCHC domain containing 3 4.51153
DEFB125 defensin, beta 125 4.51153
DEFB128 defensin, beta 128 4.51153
DEFB129 defensin, beta 129 4.51153
STK17B serine/threonine kinase 17b 4.51153
SIGLEC1 sialic acid binding Ig-like lectin 1, sialoadhesin 3.12177
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 3.12177
FAM110A family with sequence similarity 110, member A 3.12177
SLC39A10 solute carrier family 39 (zinc transporter), member 10 3.12177
PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) 3.12177
RAD21L1 RAD21-like 1 (S. pombe) 3.12177
GFRA4 GDNF family receptor alpha 4 3.12177
RBBP9 retinoblastoma binding protein 9 3.12177
CSNK2A1 casein kinase 2, alpha 1 polypeptide 3.12177
SCRT2 scratch family zinc finger 2 3.12177
SNPH syntaphilin 3.12177
POLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa 3.12177
TCF15 transcription factor 15 (basic helix-loop-helix) 3.12177
ATP11A ATPase, class VI, type 11A 3.12177
SLC52A3 solute carrier family 52 (riboflavin transporter), member 3 3.12177
DNAH7 dynein, axonemal, heavy chain 7 3.12177
SDCBP2 syndecan binding protein (syntenin) 2 3.12177
SDCBP2-AS1 SDCBP2 antisense RNA 1 3.12177
RSPO4 R-spondin 4 3.12177
ADRA1D adrenoceptor alpha 1D 3.12177
C20ORF202 chromosome 20 open reading frame 202 3.12177
SEC23B Sec23 homolog B (S. cerevisiae) 3.12177
ADAM33 ADAM metallopeptidase domain 33 3.12177
MCF2L-AS1 MCF2L antisense RNA 1 3.12177
LINC00493 long intergenic non-protein coding RNA 493 3.12177
SRXN1 sulfiredoxin 1 3.12177
FKBP1A FK506 binding protein 1A, 12kDa 3.12177
FKBP1A-SDCBP2 FKBP1A-SDCBP2 readthrough (NMD candidate) 3.12177
MIR3192 microRNA 3192 3.12177
ANGPT4 angiopoietin 4 3.12177
TMEM74B transmembrane protein 74B 3.12177
MAVS mitochondrial antiviral signaling protein 2.93899
MIR103A2 microRNA 103a-2 2.93899
LINC00851 long intergenic non-protein coding RNA 851 2.93899
CDC25B cell division cycle 25B 2.93899
SLC23A2 solute carrier family 23 (ascorbic acid transporter), member 2 2.93899
GULP1 GULP, engulfment adaptor PTB domain containing 1 2.93899
LINC00658 long intergenic non-protein coding RNA 658 2.93899
PCNA proliferating cell nuclear antigen 2.93899
AP5S1 adaptor-related protein complex 5, sigma 1 subunit 2.93899
PCNA-AS1 PCNA antisense RNA 1 2.93899
OVOL2 ovo-like zinc finger 2 2.93899
LOC100289473 cytoskeleton associated protein 2-like pseudogene 2.93899
SIRPG signal-regulatory protein gamma 2.93899
LOC643406 uncharacterized LOC643406 2.93899
SIRPD signal-regulatory protein delta 2.93899
TMEM230 transmembrane protein 230 2.93899
SPEF1 sperm flagellar 1 2.93899
SIRPA signal-regulatory protein alpha 2.93899
PANK2 pantothenate kinase 2 2.93899
NSFL1C NSFL1 (p97) cofactor (p47) 2.93899
CDS2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 2.93899
LAMP5 lysosomal-associated membrane protein family, member 5 2.93899
HAO1 hydroxyacid oxidase (glycolate oxidase) 1 2.93899
MIR103B2 microRNA 103b-2 2.93899
SMOX spermine oxidase 2.93899
LINC00654 long intergenic non-protein coding RNA 654 2.93899
RASSF2 Ras association (RalGDS/AF-6) domain family member 2 2.93899
DZANK1 double zinc ribbon and ankyrin repeat domains 1 2.93899
PROKR2 prokineticin receptor 2 2.93899
HSPA12B heat shock 70kD protein 12B 2.93899
STK35 serine/threonine kinase 35 2.93899
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 2.93899
C20ORF27 chromosome 20 open reading frame 27 2.93899
MIR561 microRNA 561 2.93899
BMP2 bone morphogenetic protein 2 2.93899
SIRPB2 signal-regulatory protein beta 2 2.93899
RNF24 ring finger protein 24 2.93899
PDYN prodynorphin 2.93899
CENPB centromere protein B, 80kDa 2.93899
TMX4 thioredoxin-related transmembrane protein 4 2.93899
SNAP25 synaptosomal-associated protein, 25kDa 2.76305
TMEM239 transmembrane protein 239 2.76305
MRPS26 mitochondrial ribosomal protein S26 2.76305
NDFIP2 Nedd4 family interacting protein 2 2.76305
MIR3976 microRNA 3976 2.76305
CARKD carbohydrate kinase domain containing 2.76305
FASTKD5 FAST kinase domains 5 2.76305
PAK7 p21 protein (Cdc42/Rac)-activated kinase 7 2.76305
EBF4 early B-cell factor 4 2.76305
SNORD17 small nucleolar RNA, C/D box 17 2.76305
SNORD37 small nucleolar RNA, C/D box 37 2.76305
PCED1A PC-esterase domain containing 1A 2.76305
MGME1 mitochondrial genome maintenance exonuclease 1 2.76305
NDUFAF5 NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 2.76305
UBOX5 U-box domain containing 5 2.76305
CRLS1 cardiolipin synthase 1 2.76305
C20ORF196 chromosome 20 open reading frame 196 2.76305
NDFIP2-AS1 NDFIP2 antisense RNA 1 2.76305
FLJ26245 uncharacterized LOC400533 2.76305
NOP56 NOP56 ribonucleoprotein 2.76305
SNORD110 small nucleolar RNA, C/D box 110 2.76305
MZT1 mitotic spindle organizing protein 1 2.76305
SNX5 sorting nexin 5 2.76305
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) 2.76305
CHGB chromogranin B 2.76305
MCM8 minichromosome maintenance complex component 8 2.76305
ZNF133 zinc finger protein 133 2.76305
CPXM1 carboxypeptidase X (M14 family), member 1 2.76305
ATRN attractin 2.76305
RNA5SP411 RNA, 5S ribosomal pseudogene 411 2.76305
DDRGK1 DDRGK domain containing 1 2.76305
ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 2.76305
OXT oxytocin/neurophysin I prepropeptide 2.76305
AVP arginine vasopressin 2.76305
RBM26-AS1 RBM26 antisense RNA 1 2.76305
IDH3B isocitrate dehydrogenase 3 (NAD+) beta 2.76305
SEL1L2 sel-1 suppressor of lin-12-like 2 (C. elegans) 2.76305
RBM26 RNA binding motif protein 26 2.76305
BORA bora, aurora kinase A activator 2.76305
SLC4A11 solute carrier family 4, sodium borate transporter, member 11 2.76305
VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) 2.76305
C20ORF194 chromosome 20 open reading frame 194 2.76305
TRMT6 tRNA methyltransferase 6 2.76305
C20ORF141 chromosome 20 open reading frame 141 2.76305
PET117 PET117 homolog (S. cerevisiae) 2.76305
CSRP2BP CSRP2 binding protein 2.76305
LZTS3 leucine zipper, putative tumor suppressor family member 3 2.76305
CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) 2.76305
MIR1292 microRNA 1292 2.76305
GNRH2 gonadotropin-releasing hormone 2 2.76305
BTBD3 BTB (POZ) domain containing 3 2.76305
TMEM200C transmembrane protein 200C 2.76305
FERMT1 fermitin family member 1 2.76305
UBOX5-AS1 UBOX5 antisense RNA 1 2.76305
LRRN4 leucine rich repeat neuronal 4 2.76305
DIS3 DIS3 exosome endoribonuclease and 3'-5' exoribonuclease 2.76305
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 2.64759
ZNF343 zinc finger protein 343 2.64759
NPVF neuropeptide VF precursor 2.64759
COL4A2-AS1 COL4A2 antisense RNA 1 2.64759
CYCS cytochrome c, somatic 2.64759
SNRPB small nuclear ribonucleoprotein polypeptides B and B1 2.64759
SNRPB2 small nuclear ribonucleoprotein polypeptide B 2.64759
RNU6-16P RNA, U6 small nuclear 16, pseudogene 2.64759
ANKEF1 ankyrin repeat and EF-hand domain containing 1 2.64759
RAB20 RAB20, member RAS oncogene family 2.64759
BFSP1 beaded filament structural protein 1, filensin 2.64759
TMC2 transmembrane channel-like 2 2.64759
PCSK2 proprotein convertase subtilisin/kexin type 2 2.64759
TGM3 transglutaminase 3 2.64759
TGM6 transglutaminase 6 2.64759
LINC00526 long intergenic non-protein coding RNA 526 2.64759
KLF12 Kruppel-like factor 12 2.64759
DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35 2.64759
C7ORF31 chromosome 7 open reading frame 31 2.64759
SNAP25-AS1 SNAP25 antisense RNA 1 2.64759
SACK1D scaffolding CK1 anchoring protein D 2.64759
MIR148A microRNA 148a 2.64759
SNORD119 small nucleolar RNA, C/D box 119 2.64759
LOC339568 uncharacterized LOC339568 2.59653
HAR1A highly accelerated region 1A (non-protein coding) 2.59653
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) 2.59653
MIR4326 microRNA 4326 2.59653
YTHDF1 YTH N(6)-methyladenosine RNA binding protein 1 2.59653
LOC63930 uncharacterized LOC63930 2.59653
EMILIN3 elastin microfibril interfacer 3 2.59653
OTOR otoraplin 2.59653
NFE2L3 nuclear factor, erythroid 2-like 3 2.59653
NKAIN4 Na+/K+ transporting ATPase interacting 4 2.59653
BIRC7 baculoviral IAP repeat containing 7 2.59653
MIR3196 microRNA 3196 2.59653
LPIN3 lipin 3 2.59653
LAMA1 laminin, alpha 1 2.59653
ZHX3 zinc fingers and homeoboxes 3 2.59653
COL20A1 collagen, type XX, alpha 1 2.59653
BHLHE23 basic helix-loop-helix family, member e23 2.59653
PIBF1 progesterone immunomodulatory binding factor 1 2.59653
MIR124-3 microRNA 124-3 2.59653
CBX3 chromobox homolog 3 2.59653
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 2.59653
ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 2.59653
HAR1B highly accelerated region 1B (non-protein coding) 2.59653
PLCG1 phospholipase C, gamma 1 2.59653
LRRC30 leucine rich repeat containing 30 2.59653
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2.59653
LINC00668 long intergenic non-protein coding RNA 668 2.59653
ISM1 isthmin 1, angiogenesis inhibitor 2.59653
FLJ16779 uncharacterized LOC100192386 2.59653
LINC00029 long intergenic non-protein coding RNA 29 2.59653
KLF5 Kruppel-like factor 5 (intestinal) 2.59653
ISM1-AS1 ISM1 antisense RNA 1 2.59653
LOC100192426 uncharacterized LOC100192426 2.59653
SNX10 sorting nexin 10 2.49065
PPDPF pancreatic progenitor cell differentiation and proliferation factor 2.49065
LOC441204 uncharacterized LOC441204 2.49065
PRPF6 pre-mRNA processing factor 6 2.49065
KIAA0087 KIAA0087 2.49065
TCFL5 transcription factor-like 5 (basic helix-loop-helix) 2.49065
SAMD10 sterile alpha motif domain containing 10 2.49065
HELZ2 helicase with zinc finger 2, transcriptional coactivator 2.49065
C7ORF71 chromosome 7 open reading frame 71 2.49065
THOC1 THO complex 1 2.49065
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 2.49065
C20ORF195 chromosome 20 open reading frame 195 2.49065
GID8 GID complex subunit 8 2.49065
OPRL1 opiate receptor-like 1 2.49065
DPH3P1 diphthamide biosynthesis 3 pseudogene 1 2.49065
UCKL1-AS1 UCKL1 antisense RNA 1 2.49065
DIDO1 death inducer-obliterator 1 2.49065
ZNF512B zinc finger protein 512B 2.49065
LINC00176 long intergenic non-protein coding RNA 176 2.49065
PTK6 protein tyrosine kinase 6 2.49065
RGS19 regulator of G-protein signaling 19 2.49065
USP14 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) 2.49065
GMEB2 glucocorticoid modulatory element binding protein 2 2.49065
SLC17A9 solute carrier family 17 (vesicular nucleotide transporter), member 9 2.49065
ZGPAT zinc finger, CCCH-type with G patch domain 2.49065
MIR647 microRNA 647 2.49065
COLEC12 collectin sub-family member 12 2.49065
UCKL1 uridine-cytidine kinase 1-like 1 2.49065
PTPRM protein tyrosine phosphatase, receptor type, M 2.49065
TOP1 topoisomerase (DNA) I 2.49065
EEF1A2 eukaryotic translation elongation factor 1 alpha 2 2.49065
MIR1914 microRNA 1914 2.49065
TPD52L2 tumor protein D52-like 2 2.49065
TASP1 taspase, threonine aspartase, 1 2.49065
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 2.49065
SOX18 SRY (sex determining region Y)-box 18 2.49065
SKAP2 src kinase associated phosphoprotein 2 2.49065
ABHD16B abhydrolase domain containing 16B 2.49065
TCEA2 transcription elongation factor A (SII), 2 2.49065
ZBTB46 zinc finger and BTB domain containing 46 2.49065
KCNQ2 potassium channel, voltage gated KQT-like subfamily Q, member 2 2.49065
SLC2A4RG SLC2A4 regulator 2.49065
LIME1 Lck interacting transmembrane adaptor 1 2.49065
MIR941-1 microRNA 941-1 2.49065
ROCK1P1 Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 2.49065
SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 2.49065
MIR941-3 microRNA 941-3 2.49065
ARFRP1 ADP-ribosylation factor related protein 1 2.49065
COL9A3 collagen, type IX, alpha 3 2.49065
NPBWR2 neuropeptides B/W receptor 2 2.49065
YDJC YdjC homolog (bacterial) 2.44392
CETN1 centrin, EF-hand protein, 1 2.44392
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy 2.44392
LINC00659 long intergenic non-protein coding RNA 659 2.44392
CCDC116 coiled-coil domain containing 116 2.44392
STMN3 stathmin-like 3 2.44392
DLGAP1-AS3 DLGAP1 antisense RNA 3 2.44392
RTEL1 regulator of telomere elongation helicase 1 2.44392
YPEL1 yippee-like 1 (Drosophila) 2.44392
MRGBP MRG/MORF4L binding protein 2.44392
DLGAP1-AS4 DLGAP1 antisense RNA 4 2.44392
LINC00470 long intergenic non-protein coding RNA 470 2.44392
OGFR-AS1 OGFR antisense RNA 1 2.44392
CHD6 chromodomain helicase DNA binding protein 6 2.44392
OGFR opioid growth factor receptor 2.44392
RTEL1-TNFRSF6B RTEL1-TNFRSF6B readthrough (NMD candidate) 2.44392
NTSR1 neurotensin receptor 1 (high affinity) 2.44392
SPINT3 serine peptidase inhibitor, Kunitz type, 3 2.41451
NEURL2 neuralized E3 ubiquitin protein ligase 2 2.41451
SDF2L1 stromal cell-derived factor 2-like 1 2.41451
TNNC2 troponin C type 2 (fast) 2.41451
SLCO4A1 solute carrier organic anion transporter family, member 4A1 2.41451
PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 2.41451
METTL4 methyltransferase like 4 2.41451
IRS2 insulin receptor substrate 2 2.41451
WFDC9 WAP four-disulfide core domain 9 2.41451
WFDC8 WAP four-disulfide core domain 8 2.41451
ACOT8 acyl-CoA thioesterase 8 2.41451
YES1 YES proto-oncogene 1, Src family tyrosine kinase 2.41451
WFDC13 WAP four-disulfide core domain 13 2.41451
WFDC11 WAP four-disulfide core domain 11 2.41451
ZSWIM1 zinc finger, SWIM-type containing 1 2.41451
UBE2C ubiquitin-conjugating enzyme E2C 2.41451
ZNF335 zinc finger protein 335 2.41451
DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1 2.41451
MIR130B microRNA 130b 2.41451
SPINT4 serine peptidase inhibitor, Kunitz type 4 2.41451
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 2.41451
ZSWIM3 zinc finger, SWIM-type containing 3 2.41451
PCIF1 PDX1 C-terminal inhibiting factor 1 2.41451
TBX1 T-box 1 2.41451
WFDC3 WAP four-disulfide core domain 3 2.41451
WFDC6 WAP four-disulfide core domain 6 2.41451
SPATA25 spermatogenesis associated 25 2.41451
CLUL1 clusterin-like 1 (retinal) 2.41451
SEPT5-GP1BB SEPT5-GP1BB readthrough 2.41451
MMP9 matrix metallopeptidase 9 2.41451
MIR301B microRNA 301b 2.41451
EPPIN epididymal peptidase inhibitor 2.41451
UBE2L3 ubiquitin-conjugating enzyme E2L 3 2.41451
SNX21 sorting nexin family member 21 2.41451
WFDC10B WAP four-disulfide core domain 10B 2.41451
WFDC10A WAP four-disulfide core domain 10A 2.41451
C22ORF29 chromosome 22 open reading frame 29 2.41451
LOC283914 2.41451
ENOSF1 enolase superfamily member 1 2.41451
CBX3P2 chromobox homolog 3 pseudogene 2 2.41451
PLTP phospholipid transfer protein 2.41451
GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like 2.41451
TYMS thymidylate synthetase 2.41451
NDC80 NDC80 kinetochore complex component 2.41451
EPPIN-WFDC6 EPPIN-WFDC6 readthrough 2.41451
CTSA cathepsin A 2.41451
TGIF1 TGFB-induced factor homeobox 1 2.39327
RTN4R reticulon 4 receptor 2.39327
TP53TG5 TP53 target 5 2.39327
ADCYAP1 adenylate cyclase activating polypeptide 1 (pituitary) 2.39327
DLGAP1-AS1 DLGAP1 antisense RNA 1 2.39327
LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) 2.39327
HRH3 histamine receptor H3 2.39327
PIGT phosphatidylinositol glycan anchor biosynthesis, class T 2.39327
MIR4761 microRNA 4761 2.39327
LOC284865 uncharacterized LOC284865 2.39327
RBPJL recombination signal binding protein for immunoglobulin kappa J region-like 2.39327
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome 2.39327
LOC388849 uncharacterized LOC388849 2.39327
SDC4 syndecan 4 2.39327
FIGNL1 fidgetin-like 1 2.39327
MIR185 microRNA 185 2.39327
SYS1 Sys1 golgi trafficking protein 2.39327
WFDC2 WAP four-disulfide core domain 2 2.39327
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 2.39327
MATN4 matrilin 4 2.39327
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 2.39327
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric 2.39327
MTG2 mitochondrial ribosome-associated GTPase 2 2.39327
MIR1286 microRNA 1286 2.39327
MYL12B myosin, light chain 12B, regulatory 2.39327
DBNDD2 dysbindin (dystrobrevin binding protein 1) domain containing 2 2.39327
LINC00896 long intergenic non-protein coding RNA 896 2.39327
TXNRD2 thioredoxin reductase 2 2.39327
COMT catechol-O-methyltransferase 2.39327
SYS1-DBNDD2 SYS1-DBNDD2 readthrough (NMD candidate) 2.39327
TANGO2 transport and golgi organization 2 homolog (Drosophila) 2.39327
MIR4325 microRNA 4325 2.36889
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 2.36889
ELMO2 engulfment and cell motility 2 2.36889
RANBP1 RAN binding protein 1 2.36889
CDH22 cadherin 22, type 2 2.36889
ZDHHC8 zinc finger, DHHC-type containing 8 2.36889
TMEM191B transmembrane protein 191B 2.36889
MIR1306 microRNA 1306 2.36889
RIMBP3 RIMS binding protein 3 2.36889
TRMT2A tRNA methyltransferase 2 homolog A (S. cerevisiae) 2.36889
ZPBP zona pellucida binding protein 2.36889
CD40 CD40 molecule, TNF receptor superfamily member 5 2.36889
TMEM191C transmembrane protein 191C 2.36889
MIR1-1 microRNA 1-1 2.36889
DGCR8 DGCR8 microprocessor complex subunit 2.36889
SLPI secretory leukocyte peptidase inhibitor 2.36889
PTPRT protein tyrosine phosphatase, receptor type, T 2.36889
PI4KAP2 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 2.36889
C7ORF72 chromosome 7 open reading frame 72 2.36889
DGCR6L DiGeorge syndrome critical region gene 6-like 2.36889
MIR133A2 microRNA 133a-2 2.36889
MIR3618 microRNA 3618 2.36889
SPO11 SPO11 meiotic protein covalently bound to DSB 2.36889
RBM38 RNA binding motif protein 38 2.36889
SLC12A5 solute carrier family 12 (potassium/chloride transporter), member 5 2.36889
MTRNR2L3 MT-RNR2-like 3 2.36889
USP41 ubiquitin specific peptidase 41 2.36889
NCOA5 nuclear receptor coactivator 5 2.36889
PI4KAP1 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 2.36889
ZNF334 zinc finger protein 334 2.36889
IKZF1 IKAROS family zinc finger 1 (Ikaros) 2.36889
RAE1 ribonucleic acid export 1 2.36889
MIR1-1HG MIR1-1 host gene 2.36889
MKRN7P makorin ring finger protein 7, pseudogene 2.36889
C20ORF166-AS1 C20orf166 antisense RNA 1 2.36889
SLC35C2 solute carrier family 35 (GDP-fucose transporter), member C2 2.36889
OCSTAMP osteoclast stimulatory transmembrane protein 2.35236
ADRM1 adhesion regulating molecule 1 2.35236
OSBPL2 oxysterol binding protein-like 2 2.35236
TP53RK TP53 regulating kinase 2.35236
MIR3616 microRNA 3616 2.35236
POM121L8P POM121 transmembrane nucleoporin-like 8 pseudogene 2.35236
CABLES2 Cdk5 and Abl enzyme substrate 2 2.35236
WFDC5 WAP four-disulfide core domain 5 2.35236
SCARNA15 small Cajal body-specific RNA 15 2.35236
STK4 serine/threonine kinase 4 2.35236
STK4-AS1 STK4 antisense RNA 1 (head to head) 2.35236
PI3 peptidase inhibitor 3, skin-derived 2.35236
MIR5095 microRNA 5095 2.35236
RPS21 ribosomal protein S21 2.35236
FAM209B family with sequence similarity 209, member B 2.35236
LAMA5 laminin, alpha 5 2.35236
MIR4758 microRNA 4758 2.35236
FAM209A family with sequence similarity 209, member A 2.35236
MIR4532 microRNA 4532 2.35236
KCNS1 potassium voltage-gated channel, modifier subfamily S, member 1 2.35236
SEMG2 semenogelin II 2.35236
ZBP1 Z-DNA binding protein 1 2.35236
GATA5 GATA binding protein 5 2.35236
SLC13A3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 2.35236
SEMG1 semenogelin I 2.35236
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 2.35236
WFDC12 WAP four-disulfide core domain 12 2.35236
CTCFL CCCTC-binding factor (zinc finger protein)-like 2.35236
RBBP8NL RBBP8 N-terminal like 2.35236
RTFDC1 replication termination factor 2 domain containing 1 2.35236
BMP7 bone morphogenetic protein 7 2.35236
GCNT7 glucosaminyl (N-acetyl) transferase family member 7 2.35236
SLC2A10 solute carrier family 2 (facilitated glucose transporter), member 10 2.35236
RIMBP3C RIMS binding protein 3C 2.35236
HIC2 hypermethylated in cancer 2 2.35236
TOMM34 translocase of outer mitochondrial membrane 34 2.3178
LINC00494 long intergenic non-protein coding RNA 494 2.3178
MIR4533 microRNA 4533 2.3178
GGT2 gamma-glutamyltransferase 2 2.3178
RAB22A RAB22A, member RAS oncogene family 2.3178
C20ORF85 chromosome 20 open reading frame 85 2.3178
MIR1257 microRNA 1257 2.3178
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 2.3178
SYCP2 synaptonemal complex protein 2 2.3178
EDN3 endothelin 3 2.3178
PREX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 2.3178
KCNB1 potassium channel, voltage gated Shab related subfamily B, member 1 2.3178
AURKA aurora kinase A 2.3178
L3MBTL1 l(3)mbt-like 1 (Drosophila) 2.3178
ZNF74 zinc finger protein 74 2.3178
TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) 2.3178
C20ORF197 chromosome 20 open reading frame 197 2.3178
PMEPA1 prostate transmembrane protein, androgen induced 1 2.3178
CSE1L CSE1 chromosome segregation 1-like (yeast) 2.3178
SGK2 serum/glucocorticoid regulated kinase 2 2.3178
FAM210B family with sequence similarity 210, member B 2.3178
POM121L7 POM121 transmembrane nucleoporin-like 7 2.3178
FAM217B family with sequence similarity 217, member B 2.3178
SRSF6 serine/arginine-rich splicing factor 6 2.3178
GRB10 growth factor receptor-bound protein 10 2.3178
PPP1R3D protein phosphatase 1, regulatory subunit 3D 2.3178
CDH26 cadherin 26 2.3178
CTSZ cathepsin Z 2.30944
ZNF831 zinc finger protein 831 2.30944
SNORD12B small nucleolar RNA, C/D box 12B 2.30944
SNORD12C small nucleolar RNA, C/D box 12C 2.30944
MYBL2 v-myb avian myeloblastosis viral oncogene homolog-like 2 2.30944
LOC100506384 uncharacterized LOC100506384 2.30944
NCOA3 nuclear receptor coactivator 3 2.30944
SNORD12 small nucleolar RNA, C/D box 12 2.30944
NPEPL1 aminopeptidase-like 1 2.30944
WISP2 WNT1 inducible signaling pathway protein 2 2.30944
ADA adenosine deaminase 2.30944
PHACTR3 phosphatase and actin regulator 3 2.30944
STX16 syntaxin 16 2.30944
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 2.30944
RIMS4 regulating synaptic membrane exocytosis 4 2.30944
ZFAS1 ZNFX1 antisense RNA 1 2.30944
COBL cordon-bleu WH2 repeat protein 2.30944
SCARF2 scavenger receptor class F, member 2 2.30944
SLMO2 slowmo homolog 2 (Drosophila) 2.30944
PTGIS prostaglandin I2 (prostacyclin) synthase 2.30944
APCDD1L-AS1 APCDD1L antisense RNA 1 (head to head) 2.30944
OSER1-AS1 OSER1 antisense RNA 1 (head to head) 2.30944
SLMO2-ATP5E SLMO2-ATP5E readthrough 2.30944
MIR3147 microRNA 3147 2.30944
PPP4R1L protein phosphatase 4, regulatory subunit 1-like (pseudogene) 2.30944
R3HDML R3H domain containing-like 2.30944
EYA2 EYA transcriptional coactivator and phosphatase 2 2.30944
OSER1 oxidative stress responsive serine-rich 1 2.30944
VAPB VAMP (vesicle-associated membrane protein)-associated protein B and C 2.30944
KCNK15 potassium channel, two pore domain subfamily K, member 15 2.30944
LOC100131496 uncharacterized LOC100131496 2.30944
ZMYND8 zinc finger, MYND-type containing 8 2.30944
IFT52 intraflagellar transport 52 2.30944
JPH2 junctophilin 2 2.30944
KLHL22 kelch-like family member 22 2.30944
CSTF1 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 2.30944
APCDD1L adenomatosis polyposis coli down-regulated 1-like 2.30944
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 2.30944
MED15 mediator complex subunit 15 2.30944
NELFCD negative elongation factor complex member C/D 2.30944
BCRP2 breakpoint cluster region pseudogene 2 2.30944
GNAS GNAS complex locus 2.30944
DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 2.30944
ZNFX1 zinc finger, NFX1-type containing 1 2.30944
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2.30944
CASS4 Cas scaffolding protein family member 4 2.30944
LOC100130849 phosphorylase kinase, gamma 1 (muscle) pseudogene 2.30944
PABPC1L poly(A) binding protein, cytoplasmic 1-like 2.30944
STAU1 staufen double-stranded RNA binding protein 1 2.30944
TUBB1 tubulin, beta 1 class VI 2.30944
GTSF1L gametocyte specific factor 1-like 2.30944
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 2.283
MIR298 microRNA 298 2.283
SNAP29 synaptosomal-associated protein, 29kDa 2.283
MIR3646 microRNA 3646 2.283
SLC9A8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 2.283
RNF114 ring finger protein 114 2.283
TTPAL tocopherol (alpha) transfer protein-like 2.283
GDAP1L1 ganglioside induced differentiation associated protein 1-like 1 2.283
SNAI1 snail family zinc finger 1 2.283
HNF4A hepatocyte nuclear factor 4, alpha 2.283
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha 2.283
POM121L4P POM121 transmembrane nucleoporin-like 4 pseudogene 2.283
ZNF716 zinc finger protein 716 2.283
MIR296 microRNA 296 2.283
SULF2 sulfatase 2 2.283
FITM2 fat storage-inducing transmembrane protein 2 2.283
SLC7A4 solute carrier family 7, member 4 2.283
GUSBP10 glucuronidase, beta pseudogene 10 2.283
TMEM191A transmembrane protein 191A (pseudogene) 2.283
TOX2 TOX high mobility group box family member 2 2.283
DKFZP434L192 uncharacterized protein DKFZp434L192 2.283
TMEM189 transmembrane protein 189 2.283
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 2.283
LOC650226 ankyrin repeat domain 26 pseudogene 2.283
GNAS-AS1 GNAS antisense RNA 1 2.283
SPATA2 spermatogenesis associated 2 2.283
C20ORF62 chromosome 20 open reading frame 62 2.283
TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2.283
SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 2.283
P2RX6P purinergic receptor P2X, ligand gated ion channel, 6 pseudogene 2.283
THAP7 THAP domain containing 7 2.26395
THAP7-AS1 THAP7 antisense RNA 1 2.26395
CEBPB CCAAT/enhancer binding protein (C/EBP), beta 2.26395
LZTR1 leucine-zipper-like transcription regulator 1 2.26395
TUBA3FP tubulin, alpha 3f, pseudogene 2.26395
SERINC3 serine incorporator 3 2.26395
PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma 2.26395
CDH4 cadherin 4, type 1, R-cadherin (retinal) 2.26395
P2RX6 purinergic receptor P2X, ligand gated ion channel, 6 2.26395
MC3R melanocortin 3 receptor 2.26395
AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 2.26395
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like 2.26395
DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 2.25904
MIR645 microRNA 645 2.25904
PARD6B par-6 family cell polarity regulator beta 2.25904
MIR4283-1 microRNA 4283-1 2.25904
BCAS4 breast carcinoma amplified sequence 4 2.25904
KCNG1 potassium channel, voltage gated modifier subfamily G, member 1 2.25904
MOCS3 molybdenum cofactor synthesis 3 2.25904
MIR3194 microRNA 3194 2.24845
ADNP activity-dependent neuroprotector homeobox 2.24845
PSPH phosphoserine phosphatase 2.24845
NUPR1L nuclear protein, transcriptional regulator, 1-like 2.24845
SNORA15 small nucleolar RNA, H/ACA box 15 2.24845
SUMF2 sulfatase modifying factor 2 2.24845
PHKG1 phosphorylase kinase, gamma 1 (muscle) 2.24845
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 2.24845
CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) 2.24845
POM121L12 POM121 transmembrane nucleoporin-like 12 2.24845
FAM65C family with sequence similarity 65, member C 2.24845
PTPN1 protein tyrosine phosphatase, non-receptor type 1 2.24139
MRPS17 mitochondrial ribosomal protein S17 2.24139
ZNF713 zinc finger protein 713 2.24139
GBAS glioblastoma amplified sequence 2.24139
SALL4 spalt-like transcription factor 4 2.24139
ATP9A ATPase, class II, type 9A 2.24139
SEPT14 septin 14 2.2355
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 2.2355
CBLN4 cerebellin 4 precursor 2.23324
SNORA22 small nucleolar RNA, H/ACA box 22 2.23078
HPVC1 human papillomavirus (type 18) E5 central sequence-like 1 2.22793
ZFP64 ZFP64 zinc finger protein 2.22783
DOK5 docking protein 5 2.22633
VSTM2A V-set and transmembrane domain containing 2A 2.22633
MIR4756 microRNA 4756 2.22558
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 2.22558
TSHZ2 teashirt zinc finger homeobox 2 2.22558
PFDN4 prefoldin subunit 4 2.22291
ZNF217 zinc finger protein 217 2.22291
BCAS1 breast carcinoma amplified sequence 1 2.22291
SUMO1P1 SUMO1 pseudogene 1 2.22291
VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2.22123
SEC61G Sec61 gamma subunit 2.21727
LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) 2.21727
EGFR-AS1 EGFR antisense RNA 1 2.21096
EGFR epidermal growth factor receptor 2.20309
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 2.16947
SNORA31 small nucleolar RNA, H/ACA box 31 2.16564
PGGT1B protein geranylgeranyltransferase type I, beta subunit 2.15402
CCDC112 coiled-coil domain containing 112 2.15402
TRIM36 tripartite motif containing 36 2.15402
TICAM2 toll-like receptor adaptor molecule 2 2.14116
CDO1 cysteine dioxygenase type 1 2.14116
LOC100130264 uncharacterized LOC100130264 2.14116
SCP2D1 SCP2 sterol-binding domain containing 1 2.14116
DTD1 D-tyrosyl-tRNA deacylase 1 2.14116
FEM1C fem-1 homolog c (C. elegans) 2.14116
TMED7-TICAM2 TMED7-TICAM2 readthrough 2.14116
LOC100270804 uncharacterized LOC100270804 2.14116
ARL14EPL ADP-ribosylation factor-like 14 effector protein-like 2.14116
LVRN laeverin 2.14116
DACH1 dachshund family transcription factor 1 2.14116
C20ORF78 chromosome 20 open reading frame 78 2.14116
ATG12 autophagy related 12 2.14116
TMED7 transmembrane emp24 protein transport domain containing 7 2.14116
COMMD10 COMM domain containing 10 2.14116
LINC00652 long intergenic non-protein coding RNA 652 2.14116
AP3S1 adaptor-related protein complex 3, sigma 1 subunit 2.14116
MACROD2-AS1 MACROD2 antisense RNA 1 2.13748
PRNT prion protein (testis specific) 2.12703
PRND prion protein 2 (dublet) 2.12703
SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 2.12703
PRNP prion protein 2.12703
RIN2 Ras and Rab interactor 2 2.12703
JAG1 jagged 1 2.12439
SLX4IP SLX4 interacting protein 2.12439
PTPRA protein tyrosine phosphatase, receptor type, A 2.12225
PLCB4 phospholipase C, beta 4 2.12225
FLRT3 fibronectin leucine rich transmembrane protein 3 2.12225
UPB1 ureidopropionase, beta 2.12225
ADORA2A-AS1 ADORA2A antisense RNA 1 2.12225
LOC339593 uncharacterized LOC339593 2.12225
MKKS McKusick-Kaufman syndrome 2.12225
SPECC1L sperm antigen with calponin homology and coiled-coil domains 1-like 2.12225
ADORA2A adenosine A2a receptor 2.12225
POM121L9P POM121 transmembrane nucleoporin-like 9, pseudogene 2.12225
GSTTP1 glutathione S-transferase theta pseudogene 1 2.11599
GGTLC2 gamma-glutamyltransferase light chain 2 2.11506
POM121L1P POM121 transmembrane nucleoporin-like 1, pseudogene 2.11506
MIR650 microRNA 650 2.11468
VPREB1 pre-B lymphocyte 1 2.11467
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 2.11435
ZNF70 zinc finger protein 70 2.11344
MMP11 matrix metallopeptidase 11 2.11344
CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 2.11344
C22ORF15 chromosome 22 open reading frame 15 2.11344
VPREB3 pre-B lymphocyte 3 2.11344
GUSBP11 glucuronidase, beta pseudogene 11 2.11344
RGL4 ral guanine nucleotide dissociation stimulator-like 4 2.11344
IGLL1 immunoglobulin lambda-like polypeptide 1 2.11167
LOC388882 uncharacterized LOC388882 2.11167
KIF16B kinesin family member 16B 2.11167
DDTL D-dopachrome tautomerase-like 2.11167
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) 2.11167
GSTT2 glutathione S-transferase theta 2 (gene/pseudogene) 2.11167
DERL3 derlin 3 2.11167
SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11 2.11167
CABIN1 calcineurin binding protein 1 2.11167
CES5AP1 carboxylesterase 5A pseudogene 1 2.11167
SUSD2 sushi domain containing 2 2.11167
DDT D-dopachrome tautomerase 2.11167
RRBP1 ribosome binding protein 1 2.11167
GGT5 gamma-glutamyltransferase 5 2.11167
BANF2 barrier to autointegration factor 2 2.11167
ZDHHC8P1 zinc finger, DHHC-type containing 8 pseudogene 1 2.11167
DSTN destrin (actin depolymerizing factor) 2.10992
EPB41L3 erythrocyte membrane protein band 4.1-like 3 2.10992
MIR4317 microRNA 4317 2.10992
LINC00667 long intergenic non-protein coding RNA 667 2.10992
C18ORF42 chromosome 18 open reading frame 42 2.10992
ZBTB14 zinc finger and BTB domain containing 14 2.10992
L3MBTL4 l(3)mbt-like 4 (Drosophila) 2.10992
LOC648691 2.10607
PRAME preferentially expressed antigen in melanoma 2.10607
ZNF280A zinc finger protein 280A 2.10597
ZNF280B zinc finger protein 280B 2.10597
ARHGAP28 Rho GTPase activating protein 28 2.10038
COL4A2 collagen, type IV, alpha 2 2.10038
COL4A1 collagen, type IV, alpha 1 2.10038
IGLL5 immunoglobulin lambda-like polypeptide 5 2.0989
RSPH14 radial spoke head 14 homolog (Chlamydomonas) 2.09628
FBXW4P1 F-box and WD repeat domain containing 4 pseudogene 1 2.09628
GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide 2.09628
PPM1F protein phosphatase, Mg2+/Mn2+ dependent, 1F 2.09628
TOP3B topoisomerase (DNA) III beta 2.09628
LINC00266-1 long intergenic non-protein coding RNA 266-1 2.09628
RAB36 RAB36, member RAS oncogene family 2.09529
MYT1 myelin transcription factor 1 2.09431
SPRY2 sprouty homolog 2 (Drosophila) 2.09431
PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2.09431
MACROD2 MACRO domain containing 2 2.09385
MAPK1 mitogen-activated protein kinase 1 2.09117
DUX4 double homeobox 4 2.09117
LPIN2 lipin 2 2.09117
LOC727896 cysteine and histidine-rich domain (CHORD) containing 1 pseudogene 2.09117
DLGAP1-AS5 DLGAP1 antisense RNA 5 2.09073
EMILIN2 elastin microfibril interfacer 2 2.09073
LOC146481 2.08712
MYOM1 myomesin 1 2.08712
LOC100130700 uncharacterized LOC100130700 2.08712
NSFP1 N-ethylmaleimide-sensitive factor pseudogene 1 2.08453
LRRC37A2 leucine rich repeat containing 37, member A2 2.08334
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 2.08334
SNORD5 small nucleolar RNA, C/D box 5 2.08334
LRRC37A leucine rich repeat containing 37A 2.08334
NSF N-ethylmaleimide-sensitive factor 2.08334
ARL17A ADP-ribosylation factor-like 17A 2.08068
SNORA9 small nucleolar RNA, H/ACA box 9 2.07851
ZNF479 zinc finger protein 479 2.0731
BCR breakpoint cluster region 2.0722
SNORA51 small nucleolar RNA, H/ACA box 51 2.06473
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 2.04842
IGHE immunoglobulin heavy constant epsilon 2.04816
IGHD immunoglobulin heavy constant delta 2.04803
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
KIAA0125 KIAA0125 2.04731
LINC00226 long intergenic non-protein coding RNA 226 2.04712
SNORD112 small nucleolar RNA, C/D box 112 2.04693

low copy number

Symbol Name Standardized Value
GAS8-AS1 GAS8 antisense RNA 1 -3.83684
PRDM7 PR domain containing 7 -3.83684
GAS8 growth arrest-specific 8 -3.83684
DBNDD1 dysbindin (dystrobrevin binding protein 1) domain containing 1 -3.83684
AFG3L1P AFG3-like AAA ATPase 1, pseudogene -3.83684
GOLGA8B golgin A8 family, member B -3.46838
UBE2MP1 ubiquitin-conjugating enzyme E2M pseudogene 1 -3.32901
SNORD27 small nucleolar RNA, C/D box 27 -2.86885
PTPRD protein tyrosine phosphatase, receptor type, D -2.86213
MIR876 microRNA 876 -2.84034
MIR873 microRNA 873 -2.83605
LINGO2 leucine rich repeat and Ig domain containing 2 -2.79933
GSTT1 glutathione S-transferase theta 1 -2.78432
GSTTP2 glutathione S-transferase theta pseudogene 2 -2.78432
LOC391322 D-dopachrome tautomerase-like -2.78432
HCG4B HLA complex group 4B (non-protein coding) -2.75184