L-Thyroxine (sodium salt pentahydrate)_RKO Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description L-Thyroxine (sodium salt pentahydrate) perturbation in RKO cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the L-Thyroxine (sodium salt pentahydrate)_RKO drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.166431
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0906767
RPS2 ribosomal protein S2 0.0897277
ACTG1 actin gamma 1 0.0846879
ZEB1 zinc finger E-box binding homeobox 1 0.0653246
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.053526
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0515625
GOLGA4 golgin A4 0.0487736
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.046814
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0451686
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0438661
NUP58 nucleoporin 58 0.0429912
CREB5 cAMP responsive element binding protein 5 0.0426058
JMJD1C jumonji domain containing 1C 0.0414492
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0411064
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0404697
MTDH metadherin 0.0400992
ELL2 elongation factor, RNA polymerase II, 2 0.0386862
OGA O-GlcNAcase 0.0372197
RASA2 RAS p21 protein activator 2 0.036786
ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 0.0367296
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0345872
CAPRIN2 caprin family member 2 0.0343996
MAPK8 mitogen-activated protein kinase 8 0.0340602
RPL7 ribosomal protein L7 0.0333892
KDM6A lysine (K)-specific demethylase 6A 0.0333215
RB1CC1 RB1-inducible coiled-coil 1 0.033174
CLTC clathrin, heavy chain (Hc) 0.0331038
TMF1 TATA element modulatory factor 1 0.032955
RPL3 ribosomal protein L3 0.032749
SEC24D SEC24 family member D 0.0325294
WDR26 WD repeat domain 26 0.0321732
CALU calumenin 0.0321603
GOLT1B golgi transport 1B 0.0318436
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase 0.0318042
LAMB3 laminin, beta 3 0.0315697
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 0.031406
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0311866
CHIC2 cysteine-rich hydrophobic domain 2 0.029896
TUT7 terminal uridylyl transferase 7 0.0297323
KDM3A lysine (K)-specific demethylase 3A 0.0296482
ARFGEF3 ARFGEF family member 3 0.0296278
KTN1 kinectin 1 (kinesin receptor) 0.0293119
RBM39 RNA binding motif protein 39 0.0292618
TEX10 testis expressed 10 0.0290791
TXNRD1 thioredoxin reductase 1 0.0289997
KMT2C lysine (K)-specific methyltransferase 2C 0.0287226
SET SET nuclear proto-oncogene 0.0284917
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0283022
ZFAND3 zinc finger, AN1-type domain 3 0.0280829
BIRC2 baculoviral IAP repeat containing 2 0.0280476
GARS1 glycyl-tRNA synthetase 1 0.0280031
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0279992
RLF rearranged L-myc fusion 0.0269879
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0266855
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.0265322
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.0265123
KMT2E lysine (K)-specific methyltransferase 2E 0.0261264
TMEM156 transmembrane protein 156 0.0260243
ANXA5 annexin A5 0.0259616
NIPBL Nipped-B homolog (Drosophila) 0.0259574
FOXJ3 forkhead box J3 0.025957
SPAG9 sperm associated antigen 9 0.0257546
KDM2A lysine (K)-specific demethylase 2A 0.0255157
UBA6 ubiquitin-like modifier activating enzyme 6 0.0252864
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0250074
SUCO SUN domain containing ossification factor 0.0247758
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.0247145
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0246222
PGM3 phosphoglucomutase 3 0.0242267
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0242038
TPD52 tumor protein D52 0.0234972
GOLGA2 golgin A2 0.0233888
CHD1 chromodomain helicase DNA binding protein 1 0.0230872
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0230132
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0229012
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0228149
PAPOLA poly(A) polymerase alpha 0.0227407
RUSC2 RUN and SH3 domain containing 2 0.0225024
SNX9 sorting nexin 9 0.0223325
TOMM34 translocase of outer mitochondrial membrane 34 0.0221256
RAB2A RAB2A, member RAS oncogene family 0.0220847
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.0220467
NAA35 N(alpha)-acetyltransferase 35, NatC auxiliary subunit 0.0220228
NCKAP1 NCK-associated protein 1 0.0219482
NKTR natural killer cell triggering receptor 0.021894
DENR density-regulated protein 0.0218332
ZNF160 zinc finger protein 160 0.0217822
RPS18 ribosomal protein S18 0.0217265
RNF24 ring finger protein 24 0.0216732
WDFY2 WD repeat and FYVE domain containing 2 0.0214384
KDM7A lysine (K)-specific demethylase 7A 0.021414
CTTNBP2NL CTTNBP2 N-terminal like 0.0213981
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0212872
EIF3H eukaryotic translation initiation factor 3, subunit H 0.0211172
CANX calnexin 0.0210657
CDK17 cyclin-dependent kinase 17 0.0210137
ZFC3H1 zinc finger, C3H1-type containing 0.0209241
CSNK1A1 casein kinase 1, alpha 1 0.0207128
EIF1 eukaryotic translation initiation factor 1 0.020678

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.149138
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.129894
ZNF438 zinc finger protein 438 -0.118158
DLC1 DLC1 Rho GTPase activating protein -0.112531
HMGA2 high mobility group AT-hook 2 -0.103151
RPL35A ribosomal protein L35a -0.0925615
FRMD6 FERM domain containing 6 -0.0915912
BNC2 basonuclin 2 -0.0863458
IFI16 interferon, gamma-inducible protein 16 -0.0862491
TTR transthyretin -0.081885
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0813609
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0789649
NABP1 nucleic acid binding protein 1 -0.0786729
MTAP methylthioadenosine phosphorylase -0.0680421
SLC38A2 solute carrier family 38, member 2 -0.0655433
TMSB10 thymosin beta 10 -0.0651497
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0599778
FLNB filamin B, beta -0.0598874
LPP LIM domain containing preferred translocation partner in lipoma -0.058683
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0549328
RAD51B RAD51 paralog B -0.0547428
NAV2 neuron navigator 2 -0.0543671
AHNAK AHNAK nucleoprotein -0.0518368
FHIT fragile histidine triad -0.0507631
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0500627
ASPH aspartate beta-hydroxylase -0.0493534
DIAPH3 diaphanous-related formin 3 -0.0483033
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.0477764
ARHGAP22 Rho GTPase activating protein 22 -0.0473441
EXOC4 exocyst complex component 4 -0.0460175
RPLP1 ribosomal protein, large, P1 -0.0435826
ALCAM activated leukocyte cell adhesion molecule -0.0425172
PFN1 profilin 1 -0.0420918
SAMD12 sterile alpha motif domain containing 12 -0.0417961
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0413316
ZBTB20 zinc finger and BTB domain containing 20 -0.0408828
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0408695
TM4SF1 transmembrane 4 L six family member 1 -0.0406589
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) -0.040586
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0388922
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0387903
DIAPH2 diaphanous-related formin 2 -0.0385057
NAV3 neuron navigator 3 -0.038331
DENND1A DENN/MADD domain containing 1A -0.0377188
MAPKAP1 mitogen-activated protein kinase associated protein 1 -0.0377076
SP100 SP100 nuclear antigen -0.0366787
CDK6 cyclin-dependent kinase 6 -0.0365965
ANK2 ankyrin 2, neuronal -0.0350391
PTMA prothymosin, alpha -0.034643
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 -0.0345398
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0343023
SPIDR scaffolding protein involved in DNA repair -0.0342239
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0341032
PBX3 pre-B-cell leukemia homeobox 3 -0.0332459
RPS19 ribosomal protein S19 -0.0326789
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0325021
RPS24 ribosomal protein S24 -0.0324898
PGK1 phosphoglycerate kinase 1 -0.0304675
RPS21 ribosomal protein S21 -0.030387
PTPRG protein tyrosine phosphatase, receptor type, G -0.0303309
TCF12 transcription factor 12 -0.0301086
RPL23 ribosomal protein L23 -0.0298947
EFNB2 ephrin-B2 -0.029815
FOXP1 forkhead box P1 -0.0296963
PHF14 PHD finger protein 14 -0.029661
TBC1D5 TBC1 domain family, member 5 -0.028976
CALD1 caldesmon 1 -0.0287994
RIGI RNA sensor RIG-I -0.0285876
CUX1 cut-like homeobox 1 -0.0283301
CCDC91 coiled-coil domain containing 91 -0.028215
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0281088
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0276832
LRMDA leucine rich melanocyte differentiation associated -0.0276363
TPT1 tumor protein, translationally-controlled 1 -0.0274855
RAB3IP RAB3A interacting protein -0.0274427
RASAL2 RAS protein activator like 2 -0.0273486
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0273295
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0270559
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough -0.0270361
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0267106
SMYD3 SET and MYND domain containing 3 -0.0264115
TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) -0.0260443
RNF213 ring finger protein 213 -0.0259123
COL27A1 collagen, type XXVII, alpha 1 -0.0256393
PHC2 polyhomeotic homolog 2 (Drosophila) -0.0254944
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 -0.0252346
DDAH1 dimethylarginine dimethylaminohydrolase 1 -0.0250388
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0247328
PARD3 par-3 family cell polarity regulator -0.0244999
RPL34 ribosomal protein L34 -0.0242312
S100A2 S100 calcium binding protein A2 -0.0240276
AEBP2 AE binding protein 2 -0.0236605
SCLT1 sodium channel and clathrin linker 1 -0.0236525
PPP1R9A protein phosphatase 1, regulatory subunit 9A -0.0235615
CNTLN centlein, centrosomal protein -0.0234547
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0231794
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0230416
TUBB tubulin, beta class I -0.0229612
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) -0.0228657
LRPPRC leucine-rich pentatricopeptide repeat containing -0.022823