LB-100_CHP-212 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description LB-100 perturbation in CHP-212 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the LB-100_CHP-212 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VCL vinculin 0.168497
TLE4 transducin-like enhancer of split 4 0.121115
ZSWIM6 zinc finger, SWIM-type containing 6 0.110459
FMN1 formin 1 0.108288
VMP1 vacuole membrane protein 1 0.106868
LGR5 leucine-rich repeat containing G protein-coupled receptor 5 0.102907
TPST1 tyrosylprotein sulfotransferase 1 0.087242
DST dystonin 0.0809989
MEIS2 Meis homeobox 2 0.0675623
PTPRD protein tyrosine phosphatase, receptor type, D 0.0637967
FNDC3A fibronectin type III domain containing 3A 0.0637698
ITPRID2 ITPR interacting domain containing 2 0.0603789
GLCCI1 glucocorticoid induced 1 0.0602483
STK38L serine/threonine kinase 38 like 0.0548334
FERMT2 fermitin family member 2 0.0541925
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.0532774
PDE3A phosphodiesterase 3A, cGMP-inhibited 0.0518568
KLHL13 kelch-like family member 13 0.0513129
NR4A3 nuclear receptor subfamily 4, group A, member 3 0.0499919
FAM107B family with sequence similarity 107, member B 0.0499887
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog 0.0458696
PDLIM5 PDZ and LIM domain 5 0.0446597
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0424806
THBS1 thrombospondin 1 0.0424596
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0424532
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.042276
ARID5B AT rich interactive domain 5B (MRF1-like) 0.0420957
DPH6 diphthamine biosynthesis 6 0.0418429
IGF2 insulin-like growth factor 2 0.0411686
PTPRK protein tyrosine phosphatase, receptor type, K 0.0405829
BPTF bromodomain PHD finger transcription factor 0.0395737
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0381
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0369268
GAB2 GRB2-associated binding protein 2 0.0357327
MAPK10 mitogen-activated protein kinase 10 0.0352587
MYO1E myosin IE 0.034774
MAP3K1 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase 0.0333171
PACS1 phosphofurin acidic cluster sorting protein 1 0.0331149
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0329652
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0327872
FHL2 four and a half LIM domains 2 0.0327673
SIK2 salt-inducible kinase 2 0.0324129
PRKCA protein kinase C, alpha 0.0323244
SYT1 synaptotagmin I 0.0320902
NCAM2 neural cell adhesion molecule 2 0.0318765
VEGFA vascular endothelial growth factor A 0.031708
TENM1 teneurin transmembrane protein 1 0.0315351
HMBOX1 homeobox containing 1 0.0314849
MRTFA myocardin related transcription factor A 0.0314633
PDE10A phosphodiesterase 10A 0.0312905
ITGAV integrin, alpha V 0.0310424
ACTN1 actinin, alpha 1 0.0309858
CDH10 cadherin 10, type 2 (T2-cadherin) 0.0306869
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0302188
PLPP1 phospholipid phosphatase 1 0.0301733
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0301222
INTS6 integrator complex subunit 6 0.0294011
HOMER1 homer scaffolding protein 1 0.0293664
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0291742
APLP2 amyloid beta (A4) precursor-like protein 2 0.0286899
EGR1 early growth response 1 0.0286147
SYNPO2 synaptopodin 2 0.028178
PTPRE protein tyrosine phosphatase, receptor type, E 0.0279813
BCL2L13 BCL2-like 13 (apoptosis facilitator) 0.0279166
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 0.0278919
LINGO2 leucine rich repeat and Ig domain containing 2 0.0278134
IRS1 insulin receptor substrate 1 0.0274464
CEMIP2 cell migration inducing hyaluronidase 2 0.0271692
ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 0.0270215
KAT6B K(lysine) acetyltransferase 6B 0.0268922
RALYL RALY RNA binding protein-like 0.0264104
ANTXR1 anthrax toxin receptor 1 0.0263289
PTEN phosphatase and tensin homolog 0.026112
RGS4 regulator of G-protein signaling 4 0.0260145
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0259526
NRIP1 nuclear receptor interacting protein 1 0.0254776
TCF12 transcription factor 12 0.025387
KCNIP4 Kv channel interacting protein 4 0.0252067
NFE2L1 nuclear factor, erythroid 2-like 1 0.0250053
PCBP2 poly(rC) binding protein 2 0.024826
PALLD palladin, cytoskeletal associated protein 0.0245265
NEK1 NIMA-related kinase 1 0.0242082
EPHA7 EPH receptor A7 0.0239332
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.0237248
MYO6 myosin VI 0.0236601
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0235883
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0233344
GLS2 glutaminase 2 (liver, mitochondrial) 0.0228417
FLNA filamin A, alpha 0.0228409
BRD2 bromodomain containing 2 0.0225552
BICD1 bicaudal D homolog 1 (Drosophila) 0.0220765
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0220346
DKK2 dickkopf WNT signaling pathway inhibitor 2 0.0219517
USP9X ubiquitin specific peptidase 9, X-linked 0.0219416
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.0218282
HDX highly divergent homeobox 0.0218265
BOD1L1 biorientation of chromosomes in cell division 1-like 1 0.0216415
AMOTL1 angiomotin like 1 0.0211417
ENAH enabled homolog (Drosophila) 0.0211151
PCDH10 protocadherin 10 0.020899

decreased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha -0.155714
NRG1 neuregulin 1 -0.126695
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 -0.0975966
VIM vimentin -0.0945088
COL1A1 collagen, type I, alpha 1 -0.0911846
TPT1 tumor protein, translationally-controlled 1 -0.0896824
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0878677
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0836368
RPL23 ribosomal protein L23 -0.0783338
RPS24 ribosomal protein S24 -0.0766836
RPL35A ribosomal protein L35a -0.0764114
NALF1 NALCN channel auxiliary factor 1 -0.0743054
RPL38 ribosomal protein L38 -0.0678795
LPIN1 lipin 1 -0.0673682
RPS6 ribosomal protein S6 -0.0617922
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.0592326
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0578796
RPLP1 ribosomal protein, large, P1 -0.0566955
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0558977
AKAP12 A kinase (PRKA) anchor protein 12 -0.0549722
KPNB1 karyopherin (importin) beta 1 -0.0528349
RPL31 ribosomal protein L31 -0.0527341
P4HB prolyl 4-hydroxylase, beta polypeptide -0.051518
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0507376
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0503887
TMSB10 thymosin beta 10 -0.0478312
ACTG1 actin gamma 1 -0.0474273
EIF1 eukaryotic translation initiation factor 1 -0.0470181
GNAS GNAS complex locus -0.0462171
RHOBTB3 Rho-related BTB domain containing 3 -0.0450579
H3-3B H3.3 histone B -0.0445237
IER3 immediate early response 3 -0.0440587
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.0438868
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 -0.0435447
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0431308
GPC5 glypican 5 -0.0427241
HIP1 huntingtin interacting protein 1 -0.0411657
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0408931
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0407147
RPL34 ribosomal protein L34 -0.0406253
MAML2 mastermind-like 2 (Drosophila) -0.040277
MEF2A myocyte enhancer factor 2A -0.0393135
EGFR epidermal growth factor receptor -0.03796
CCNI cyclin I -0.037714
RPS21 ribosomal protein S21 -0.0376965
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0375311
COL3A1 collagen, type III, alpha 1 -0.0373569
NDRG1 N-myc downstream regulated 1 -0.0358253
CUX1 cut-like homeobox 1 -0.0355634
IGFBP3 insulin-like growth factor binding protein 3 -0.0346224
RPL37A ribosomal protein L37a -0.0344614
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.0342666
RPLP0 ribosomal protein, large, P0 -0.0338165
CCND1 cyclin D1 -0.0334698
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0326146
RPL12 ribosomal protein L12 -0.0324276
MSI2 musashi RNA-binding protein 2 -0.0321535
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0315921
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0315188
RPS29 ribosomal protein S29 -0.031294
RTN4 reticulon 4 -0.031214
RPL19 ribosomal protein L19 -0.0311772
AHNAK AHNAK nucleoprotein -0.0305428
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0295825
FKBP10 FK506 binding protein 10, 65 kDa -0.0293365
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0290655
SEC31A SEC31 homolog A (S. cerevisiae) -0.0289007
CADM2 cell adhesion molecule 2 -0.0288481
ACBD3 acyl-CoA binding domain containing 3 -0.0285539
IARS1 isoleucyl-tRNA synthetase 1 -0.0285514
NBEA neurobeachin -0.0282479
RPL37 ribosomal protein L37 -0.0281998
RSF1 remodeling and spacing factor 1 -0.0279498
CNTN4 contactin 4 -0.0277394
CEP350 centrosomal protein 350kDa -0.0277368
RPS14 ribosomal protein S14 -0.0275633
TM9SF3 transmembrane 9 superfamily member 3 -0.0271232
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0270169
GDF15 growth differentiation factor 15 -0.0269561
MXI1 MAX interactor 1, dimerization protein -0.026946
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) -0.0266031
FTL ferritin, light polypeptide -0.0266007
DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 -0.0265156
USP36 ubiquitin specific peptidase 36 -0.0264937
COL4A5 collagen, type IV, alpha 5 -0.026321
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0263163
SEPTIN9 septin 9 -0.0261623
SAMD5 sterile alpha motif domain containing 5 -0.0260879
CALU calumenin -0.0260824
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.026065
NAP1L1 nucleosome assembly protein 1-like 1 -0.0260325
PDE4D phosphodiesterase 4D, cAMP-specific -0.0259713
RSL1D1 ribosomal L1 domain containing 1 -0.0259136
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0258904
EIF4A1 eukaryotic translation initiation factor 4A1 -0.025765
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0257134
RPL36A ribosomal protein L36a -0.0253579
TIMP3 TIMP metallopeptidase inhibitor 3 -0.025329
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 -0.0252334
ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 -0.0251846