LB-100_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description LB-100 perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the LB-100_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MYO1E myosin IE 0.0933317
FAT1 FAT atypical cadherin 1 0.0906537
EXT1 exostosin glycosyltransferase 1 0.0886695
LMO7 LIM domain 7 0.0749286
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0505345
HSPA8 heat shock 70kDa protein 8 0.0446515
RPS12 ribosomal protein S12 0.0433812
ALCAM activated leukocyte cell adhesion molecule 0.0433718
LDHA lactate dehydrogenase A 0.0425067
B2M beta-2-microglobulin 0.0408595
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0400926
SVIL supervillin 0.0395338
MT2A metallothionein 2A 0.0394146
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.035519
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0354023
ONECUT3 one cut homeobox 3 0.0350488
TTC3 tetratricopeptide repeat domain 3 0.0332117
SQSTM1 sequestosome 1 0.0331711
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 0.0326285
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0322256
LAMA4 laminin, alpha 4 0.032053
EGFR epidermal growth factor receptor 0.0318168
RIGI RNA sensor RIG-I 0.031789
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0311745
AKAP12 A kinase (PRKA) anchor protein 12 0.0305088
ZSWIM6 zinc finger, SWIM-type containing 6 0.0299715
POF1B premature ovarian failure, 1B 0.029434
ISG15 ISG15 ubiquitin-like modifier 0.0289127
MYO5B myosin VB 0.0286643
ASPH aspartate beta-hydroxylase 0.0281638
RPL3 ribosomal protein L3 0.0278193
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) 0.0277571
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 0.0274875
RPS2 ribosomal protein S2 0.0273215
RPL37A ribosomal protein L37a 0.027059
SOX9 SRY (sex determining region Y)-box 9 0.0268085
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0262592
GOLGB1 golgin B1 0.0261902
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0252339
SEPTIN9 septin 9 0.0248978
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0248843
SLCO1B3-SLCO1B7 SLCO1B3-SLCO1B7 readthrough 0.0248559
MPRIP myosin phosphatase Rho interacting protein 0.0248113
AFF1 AF4/FMR2 family, member 1 0.0246089
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0241402
TRAPPC9 trafficking protein particle complex 9 0.0241146
MUC13 mucin 13, cell surface associated 0.0239338
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0238621
SAMD4A sterile alpha motif domain containing 4A 0.0231867
TMED2 transmembrane emp24 domain trafficking protein 2 0.0223813
MARCHF3 membrane associated ring-CH-type finger 3 0.0221629
SMAD2 SMAD family member 2 0.0220969
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0216872
LURAP1L leucine rich adaptor protein 1-like 0.0214811
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0213967
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.0213881
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.021111
CALR calreticulin 0.0209574
INTS6 integrator complex subunit 6 0.0206963
CD47 CD47 molecule 0.0206709
MYH14 myosin, heavy chain 14, non-muscle 0.020625
ARHGAP21 Rho GTPase activating protein 21 0.0205646
CLIP2 CAP-GLY domain containing linker protein 2 0.0202786
CUX1 cut-like homeobox 1 0.0202137
UNC13B unc-13 homolog B (C. elegans) 0.0199611
NEBL nebulette 0.0197708
KANK1 KN motif and ankyrin repeat domains 1 0.0195385
CATSPERB catsper channel auxiliary subunit beta 0.0195338
GRB10 growth factor receptor-bound protein 10 0.0195065
MACF1 microtubule-actin crosslinking factor 1 0.0192828
OASL 2'-5'-oligoadenylate synthetase-like 0.0188006
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0187353
DUSP16 dual specificity phosphatase 16 0.0184987
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.0184554
GAREM1 GRB2 associated regulator of MAPK1 subtype 1 0.0182418
TMCO3 transmembrane and coiled-coil domains 3 0.0177157
BRD2 bromodomain containing 2 0.0176073
B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 0.0175169
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0174677
SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 0.0171854
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0170295
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 0.0169834
TGFBR3 transforming growth factor, beta receptor III 0.0169121
HYOU1 hypoxia up-regulated 1 0.0166324
RPS27A ribosomal protein S27a 0.0165833
CD44 CD44 molecule (Indian blood group) 0.0165104
MYH9 myosin, heavy chain 9, non-muscle 0.0164349
CTSB cathepsin B 0.016386
BACE2 beta-site APP-cleaving enzyme 2 0.0163292
EIF4B eukaryotic translation initiation factor 4B 0.0162594
APLP2 amyloid beta (A4) precursor-like protein 2 0.0162308
SMAD3 SMAD family member 3 0.0161324
TACC2 transforming, acidic coiled-coil containing protein 2 0.0160596
FBXO11 F-box protein 11 0.0160571
IFIH1 interferon induced with helicase C domain 1 0.0160529
EGLN3 egl-9 family hypoxia-inducible factor 3 0.0159885
CEMIP2 cell migration inducing hyaluronidase 2 0.0159062
CXCL8 chemokine (C-X-C motif) ligand 8 0.0158987
GMDS GDP-mannose 4,6-dehydratase 0.0158688
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2 0.0158552

decreased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha -0.173939
TMSB10 thymosin beta 10 -0.151452
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.137347
NPSR1 neuropeptide S receptor 1 -0.133923
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.121249
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.113358
TXNIP thioredoxin interacting protein -0.105789
S100A6 S100 calcium binding protein A6 -0.105076
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.10464
NDRG1 N-myc downstream regulated 1 -0.103406
MUC6 mucin 6, oligomeric mucus/gel-forming -0.0799315
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0762711
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0747229
MED13L mediator complex subunit 13-like -0.0699003
FAM13A family with sequence similarity 13, member A -0.0697583
PTBP3 polypyrimidine tract binding protein 3 -0.0688688
TNS4 tensin 4 -0.0687019
EPCAM epithelial cell adhesion molecule -0.0682603
RPLP0 ribosomal protein, large, P0 -0.0677875
ZNF292 zinc finger protein 292 -0.0677134
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0645143
ANXA2 annexin A2 -0.0633617
ESYT2 extended synaptotagmin-like protein 2 -0.0628361
RPL35A ribosomal protein L35a -0.0625357
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0623312
GPHN gephyrin -0.0617238
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0592535
PERP PERP, TP53 apoptosis effector -0.0584079
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0581537
TPT1 tumor protein, translationally-controlled 1 -0.0577899
RPL34 ribosomal protein L34 -0.057089
CD46 CD46 molecule, complement regulatory protein -0.0568516
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0563035
NALF1 NALCN channel auxiliary factor 1 -0.0547267
HMGA1 high mobility group AT-hook 1 -0.0538589
TM9SF3 transmembrane 9 superfamily member 3 -0.0522533
PPARG peroxisome proliferator-activated receptor gamma -0.0521466
CALB1 calbindin 1, 28kDa -0.0507112
SETD5 SET domain containing 5 -0.0496156
NCOR1 nuclear receptor corepressor 1 -0.0495539
FLNB filamin B, beta -0.048961
GCC2 GRIP and coiled-coil domain containing 2 -0.047993
PIGR polymeric immunoglobulin receptor -0.0461926
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0457996
SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 -0.0452694
RPS6 ribosomal protein S6 -0.0450797
DLG1 discs, large homolog 1 (Drosophila) -0.0444635
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha -0.0434489
NFIA nuclear factor I/A -0.0433616
CCNY cyclin Y -0.0433264
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0432963
BIRC6 baculoviral IAP repeat containing 6 -0.0428663
MLEC malectin -0.0428515
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0427452
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.0424316
EZR ezrin -0.0420414
CBX3 chromobox homolog 3 -0.0419379
LGALS4 lectin, galactoside-binding, soluble, 4 -0.0419253
KRT19 keratin 19, type I -0.0409804
CEMIP cell migration inducing protein, hyaluronan binding -0.0409492
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 -0.0404752
ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 -0.0402978
ITGA6 integrin, alpha 6 -0.0400066
INSIG1 insulin induced gene 1 -0.0395633
RPS19 ribosomal protein S19 -0.0394965
USP3 ubiquitin specific peptidase 3 -0.0390362
RPL11 ribosomal protein L11 -0.0387619
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase -0.0382611
SPPL3 signal peptide peptidase like 3 -0.0382444
PTPRR protein tyrosine phosphatase, receptor type, R -0.0382406
RAB6A RAB6A, member RAS oncogene family -0.037999
RPL12 ribosomal protein L12 -0.0379973
FNBP1L formin binding protein 1-like -0.0379825
CSDE1 cold shock domain containing E1, RNA-binding -0.0378916
RPLP1 ribosomal protein, large, P1 -0.0378141
TFF3 trefoil factor 3 (intestinal) -0.0376487
FERMT1 fermitin family member 1 -0.0374661
EREG epiregulin -0.0374625
DEK DEK proto-oncogene -0.03728
CCNI cyclin I -0.0368137
EXOC1 exocyst complex component 1 -0.0366559
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0364631
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) -0.0358792
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.035526
IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase -0.0352898
GNAQ guanine nucleotide binding protein (G protein), q polypeptide -0.0351981
KLF3 Kruppel-like factor 3 (basic) -0.0350805
PRSS3 protease, serine, 3 -0.0350783
S100A10 S100 calcium binding protein A10 -0.0349449
VDAC1 voltage-dependent anion channel 1 -0.0344219
AHNAK AHNAK nucleoprotein -0.034286
DDIT4 DNA-damage-inducible transcript 4 -0.0340308
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0338027
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 -0.0336954
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0335434
PFN1 profilin 1 -0.0332513
ZMYM2 zinc finger, MYM-type 2 -0.0330685
LOC112694756 uncharaterized LOC112694756 -0.0329302
RSF1 remodeling and spacing factor 1 -0.0325604
AGR2 anterior gradient 2 -0.0324782