LB2241-RCC Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

250 genes with high or low copy number in LB2241-RCC relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CHMP5 charged multivesicular body protein 5 4.51153
B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 4.51153
BAG1 BCL2-associated athanogene 4.51153
SPINK4 serine peptidase inhibitor, Kazal type 4 4.51153
AQP3 aquaporin 3 (Gill blood group) 4.51153
AQP7 aquaporin 7 4.51153
NOL6 nucleolar protein 6 (RNA-associated) 4.51153
NFX1 nuclear transcription factor, X-box binding 1 4.51153
PRSS3 protease, serine, 3 3.12177
PTENP1 phosphatase and tensin homolog pseudogene 1 (functional) 3.12177
APTX aprataxin 3.12177
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 3.12177
MIR4475 microRNA 4475 3.12177
MIR4476 microRNA 4476 3.12177
EXOSC3 exosome component 3 3.12177
NDUFB6 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa 3.12177
TOPORS-AS1 TOPORS antisense RNA 1 3.12177
MIR4540 microRNA 4540 3.12177
TMEM215 transmembrane protein 215 3.12177
TOPORS topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase 3.12177
TRMT10B tRNA methyltransferase 10 homolog B (S. cerevisiae) 3.12177
SUGT1P1 SUGT1 pseudogene 1 3.12177
TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like 3.12177
SMU1 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) 3.12177
ANXA2P2 annexin A2 pseudogene 2 3.12177
ANKRD18B ankyrin repeat domain 18B 3.12177
SNORD121B small nucleolar RNA, C/D box 121B 2.93899
UBAP2 ubiquitin associated protein 2 2.93899
ZBTB5 zinc finger and BTB domain containing 5 2.93899
TOMM5 translocase of outer mitochondrial membrane 5 homolog (yeast) 2.93899
CCIN calicin 2.93899
ZCCHC7 zinc finger, CCHC domain containing 7 2.93899
ACO1 aconitase 1, soluble 2.93899
CLTA clathrin, light chain A 2.93899
GRHPR glyoxylate reductase/hydroxypyruvate reductase 2.93899
POLR1E polymerase (RNA) I polypeptide E, 53kDa 2.93899
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 2.93899
OR2S2 olfactory receptor, family 2, subfamily S, member 2 (gene/pseudogene) 2.93899
UBE2R2 ubiquitin-conjugating enzyme E2R 2 2.93899
SNORD121A small nucleolar RNA, C/D box 121A 2.93899
FBXO10 F-box protein 10 2.93899
GLIPR2 GLI pathogenesis-related 2 2.93899
LINC00950 long intergenic non-protein coding RNA 950 2.76305
PAX5 paired box 5 2.76305
GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2.76305
RECK reversion-inducing-cysteine-rich protein with kazal motifs 2.76305
RNF38 ring finger protein 38 2.76305
TESK1 testis-specific kinase 1 2.76305
NPR2 natriuretic peptide receptor 2 2.76305
SPAG8 sperm associated antigen 8 2.76305
CREB3 cAMP responsive element binding protein 3 2.76305
MELK maternal embryonic leucine zipper kinase 2.76305
TMEM8B transmembrane protein 8B 2.76305
DCAF12 DDB1 and CUL4 associated factor 12 2.76305
TLN1 talin 1 2.76305
TPM2 tropomyosin 2 (beta) 2.76305
FAM166B family with sequence similarity 166, member B 2.76305
MSMP microseminoprotein, prostate associated 2.76305
HINT2 histidine triad nucleotide binding protein 2 2.76305
UBAP1 ubiquitin associated protein 1 2.76305
CD72 CD72 molecule 2.76305
GBA2 glucosidase, beta (bile acid) 2 2.76305
MIR4667 microRNA 4667 2.76305
HRCT1 histidine rich carboxyl terminus 1 2.76305
RUSC2 RUN and SH3 domain containing 2 2.76305
SIT1 signaling threshold regulating transmembrane adaptor 1 2.76305
FAM221B family with sequence similarity 221, member B 2.76305
RGP1 RGP1 retrograde golgi transport homolog (S. cerevisiae) 2.76305
CA9 carbonic anhydrase IX 2.76305
OR13J1 olfactory receptor, family 13, subfamily J, member 1 2.76305
CCDC107 coiled-coil domain containing 107 2.64759
ARHGEF39 Rho guanine nucleotide exchange factor (GEF) 39 2.64759
KIF24 kinesin family member 24 2.64759
SCARNA8 small Cajal body-specific RNA 8 2.64759
KIAA1161 KIAA1161 2.64759
DNAJB5 DnaJ (Hsp40) homolog, subfamily B, member 5 2.64759
ATP8B5P ATPase, class I, type 8B, member 5, pseudogene 2.64759
STOML2 stomatin (EPB72)-like 2 2.64759
RRAGA Ras-related GTP binding A 2.64759
FANCG Fanconi anemia, complementation group G 2.64759
KIAA1045 KIAA1045 2.64759
HAUS6 HAUS augmin-like complex, subunit 6 2.64759
FAM214B family with sequence similarity 214, member B 2.64759
RMRP RNA component of mitochondrial RNA processing endoribonuclease 2.64759
FAM205BP transmembrane protein C9orf144B pseudogene 2.64759
NUDT2 nudix (nucleoside diphosphate linked moiety X)-type motif 2 2.64759
C9ORF131 chromosome 9 open reading frame 131 2.64759
PLIN2 perilipin 2 2.64759
PIGO phosphatidylinositol glycan anchor biosynthesis, class O 2.64759
VCP valosin containing protein 2.64759
ARID3C AT rich interactive domain 3C (BRIGHT-like) 2.59653
IL11RA interleukin 11 receptor, alpha 2.59653
GALT galactose-1-phosphate uridylyltransferase 2.59653
FAM205A family with sequence similarity 205, member A 2.59653
C9ORF24 chromosome 9 open reading frame 24 2.59653
DENND4C DENN/MADD domain containing 4C 2.59653
CCL19 chemokine (C-C motif) ligand 19 2.59653
CCL27 chemokine (C-C motif) ligand 27 2.59653
CCL21 chemokine (C-C motif) ligand 21 2.59653
DNAI1 dynein, axonemal, intermediate chain 1 2.59653
RPS6 ribosomal protein S6 2.59653
DCTN3 dynactin 3 (p22) 2.59653
RPP25L ribonuclease P/MRP 25kDa subunit-like 2.59653
CNTFR ciliary neurotrophic factor receptor 2.59653
ENHO energy homeostasis associated 2.59653
FAM219A family with sequence similarity 219, member A 2.59653
SIGMAR1 sigma non-opioid intracellular receptor 1 2.59653
SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa 2.49065
TTC39B tetratricopeptide repeat domain 39B 2.49065
IFNE interferon, epsilon 2.15921
IFNA1 interferon, alpha 1 2.15915
IFNA8 interferon, alpha 8 2.15913
IFNA2 interferon, alpha 2 2.1591
IFNA13 interferon, alpha 13 2.15909
IFNA6 interferon, alpha 6 2.15905
ELAVL2 ELAV like neuron-specific RNA binding protein 2 2.15903
KLHL9 kelch-like family member 9 2.15903
IFNA5 interferon, alpha 5 2.15899
IZUMO3 IZUMO family member 3 2.15897
IFNA22P interferon, alpha 22, pseudogene 2.15895
CNTNAP3B contactin associated protein-like 3B 2.15892
IFNA10 interferon, alpha 10 2.15889
IFNA7 interferon, alpha 7 2.15889
IFNA14 interferon, alpha 14 2.15889
IFNA17 interferon, alpha 17 2.15886
IFNA16 interferon, alpha 16 2.15886
IFNA4 interferon, alpha 4 2.1588
IFNA21 interferon, alpha 21 2.15871
IFNW1 interferon, omega 1 2.15839
IFNB1 interferon, beta 1, fibroblast 2.15832
SPATA31A6 SPATA31 subfamily A, member 6 2.15689
MOB3B MOB kinase activator 3B 2.15689
IFNK interferon, kappa 2.1565
C9ORF72 chromosome 9 open reading frame 72 2.1565
ZNF658B zinc finger protein 658B, pseudogene 2.15529
FAM74A1 family with sequence similarity 74, member A1 2.15402
SHB Src homology 2 domain containing adaptor protein B 2.15402
HACD4 3-hydroxyacyl-CoA dehydratase 4 2.15203
IFT74 intraflagellar transport 74 2.14778
TEK TEK tyrosine kinase, endothelial 2.14762
CAAP1 caspase activity and apoptosis inhibitor 1 2.14762
PLAA phospholipase A2-activating protein 2.14762
LRRC19 leucine rich repeat containing 19 2.14747
LINC00032 long intergenic non-protein coding RNA 32 2.14732
EQTN equatorin, sperm acrosome associated 2.14703
LOC100506422 putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 2.1463
ANKRD18A ankyrin repeat domain 18A 2.14588
FAM201A family with sequence similarity 201, member A 2.14588
FAM95C family with sequence similarity 95, member C 2.14588
CNTNAP3 contactin associated protein-like 3 2.14588
IGFBPL1 insulin-like growth factor binding protein-like 1 2.14508
ALDH1B1 aldehyde dehydrogenase 1 family, member B1 2.14508
MIR491 microRNA 491 2.1433
DCAF10 DDB1 and CUL4 associated factor 10 2.14116
SLC25A51 solute carrier family 25, member 51 2.14116
FRMPD1 FERM and PDZ domain containing 1 2.14116
FOCAD focadhesin 2.13951
MIR4474 microRNA 4474 2.13708
LINGO2 leucine rich repeat and Ig domain containing 2 2.13631
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 2.12599
MIR4473 microRNA 4473 2.1258
TUSC1 tumor suppressor candidate 1 2.12573
SNORA30 small nucleolar RNA, H/ACA box 30 2.12529
DUSP22 dual specificity phosphatase 22 2.12527
SAXO1 stabilizer of axonemal microtubules 1 2.10992
UNC13B unc-13 homolog B (C. elegans) 2.10992
SNORD27 small nucleolar RNA, C/D box 27 2.10607
SLC24A2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 2.10579
SH3GL2 SH3-domain GRB2-like 2 2.10556
ADAMTSL1 ADAMTS-like 1 2.10177
MIR3152 microRNA 3152 2.10177
ACER2 alkaline ceramidase 2 2.10038
C9ORF92 chromosome 9 open reading frame 92 2.09727
PSIP1 PC4 and SFRS1 interacting protein 1 2.09628
KDM4C lysine (K)-specific demethylase 4C 2.09628
CER1 cerberus 1, DAN family BMP antagonist 2.09431
FREM1 FRAS1 related extracellular matrix 1 2.09431
LOC389705 chromosome 4 open reading frame 27 pseudogene 2.09431
BNC2 basonuclin 2 2.09316
CNTLN centlein, centrosomal protein 2.09314
DMRT3 doublesex and mab-3 related transcription factor 3 2.09314
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 2.09294
DMRT2 doublesex and mab-3 related transcription factor 2 2.09294
GLIS3 GLIS family zinc finger 3 2.0925
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2 2.0925
VLDLR very low density lipoprotein receptor 2.0925
KIAA0020 KIAA0020 2.0925
GLIS3-AS1 GLIS3 antisense RNA 1 2.0925
CCDC171 coiled-coil domain containing 171 2.09205
GLDC glycine dehydrogenase (decarboxylating) 2.09117
INSL6 insulin-like 6 2.09117
JAK2 Janus kinase 2 2.09117
MIR101-2 microRNA 101-2 2.09117
PTPRD protein tyrosine phosphatase, receptor type, D 2.08947
KANK1 KN motif and ankyrin repeat domains 1 2.08887
RFX3 regulatory factor X, 3 (influences HLA class II expression) 2.08882
C9ORF66 chromosome 9 open reading frame 66 2.08877
DMRT1 doublesex and mab-3 related transcription factor 1 2.08877
NFIB nuclear factor I/B 2.08856
CBWD1 COBW domain containing 1 2.08856
LINC00583 long intergenic non-protein coding RNA 583 2.08839
FOXD4 forkhead box D4 2.08839
AK3 adenylate kinase 3 2.08781
IL33 interleukin 33 2.08781
RLN2 relaxin 2 2.08781
SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 2.08781
SPATA6L spermatogenesis associated 6-like 2.08781
TPD52L3 tumor protein D52-like 3 2.08781
RCL1 RNA terminal phosphate cyclase-like 1 2.08781
INSL4 insulin-like 4 (placenta) 2.08781
RLN1 relaxin 1 2.08781
CDC37L1 cell division cycle 37-like 1 2.08781
ZDHHC21 zinc finger, DHHC-type containing 21 2.08781
PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2 2.08781
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 2.08781
DOCK8 dedicator of cytokinesis 8 2.0845
LURAP1L leucine rich adaptor protein 1-like 2.08441
CD274 CD274 molecule 2.08391
PDCD1LG2 programmed cell death 1 ligand 2 2.08391
TYRP1 tyrosinase-related protein 1 2.08125
MPDZ multiple PDZ domain protein 2.08116
MIR4665 microRNA 4665 2.08066
PLGRKT plasminogen receptor, C-terminal lysine transmembrane protein 2.08066
RANBP6 RAN binding protein 6 2.08066
MLANA melan-A 2.07822
ERMP1 endoplasmic reticulum metallopeptidase 1 2.07822
KIAA2026 KIAA2026 2.07822

low copy number

Symbol Name Standardized Value
LOC100132167 uncharacterized LOC100132167 -3.83684
LOC440896 uncharacterized LOC440896 -3.61078
LOC642929 general transcription factor II, i pseudogene -3.57558
PGM5P2 phosphoglucomutase 5 pseudogene 2 -3.57558
ANKRD20A3 ankyrin repeat domain 20 family, member A3 -3.57558
CDC42EP2 CDC42 effector protein (Rho GTPase binding) 2 -3.29865
SLC25A45 solute carrier family 25, member 45 -3.2703
TIGD3 tigger transposable element derived 3 -3.2703
DPF2 D4, zinc and double PHD fingers family 2 -3.2703
RHD Rh blood group, D antigen -3.17091
NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) -3.12964
FRMD8 FERM domain containing 8 -3.12964
MRGPRX1 MAS-related GPR, member X1 -3.00044
TEKT4P2 tektin 4 pseudogene 2 -2.9644
TPTE transmembrane phosphatase with tensin homology -2.86003
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.84224
AMY2A amylase, alpha 2A (pancreatic) -2.81685
AMY1A amylase, alpha 1A (salivary) -2.81685
LOC391322 D-dopachrome tautomerase-like -2.78432
GSTTP2 glutathione S-transferase theta pseudogene 2 -2.78432
GSTT1 glutathione S-transferase theta 1 -2.78432
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.73524
ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 -2.73329