LDB1 Gene Set

Dataset CM4AI KOLF21J CRISPRi Gene Perturbation Atlas
Category transcriptomics
Type gene perturbation
Description LIM domain binding 1| (NCBI Entrez Gene Database, 8861)
Similar Terms
Downloads & Tools

Genes

376 genes differentially expressed following the LDB1 gene perturbation from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas.

increased expression

Symbol Name Standardized Value
FPR1 formyl peptide receptor 1 3.27646
UNC13C unc-13 homolog C (C. elegans) 3.27646
SIRPB2 signal-regulatory protein beta 2 3.27646
WT1 Wilms tumor 1 3.27646
TKTL1 transketolase-like 1 3.27646
HBA1 hemoglobin, alpha 1 3.27646
PDE7B phosphodiesterase 7B 3.27646
PAX3 paired box 3 3.27646
FETUB fetuin B 3.27646
OLIG1 oligodendrocyte transcription factor 1 3.27646
TUBB1 tubulin, beta 1 class VI 3.27646
OPRL1 opiate receptor-like 1 3.27646
RAX retina and anterior neural fold homeobox 3.27646
MAGEA3 melanoma antigen family A3 3.27646
NANOS3 nanos homolog 3 (Drosophila) 3.27646
PLVAP plasmalemma vesicle associated protein 3.27646
CCDC116 coiled-coil domain containing 116 3.27646
TMPRSS11F transmembrane protease, serine 11F 3.27646
LY86 lymphocyte antigen 86 3.27646
TXLNB taxilin beta 3.27646
CARD18 caspase recruitment domain family, member 18 3.27646
WDR87 WD repeat domain 87 3.27646
AKR7L aldo-keto reductase family 7-like (gene/pseudogene) 3.27646
DUXB double homeobox B 3.27646
SPAM1 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) 3.27646
PRICKLE4 prickle homolog 4 (Drosophila) 3.27646
NEU4 sialidase 4 3.27646
GPR26 G protein-coupled receptor 26 3.27646
CRYGA crystallin, gamma A 3.27646
ATOH1 atonal homolog 1 (Drosophila) 3.27646
TAS2R19 taste receptor, type 2, member 19 3.27646
MYO16 myosin XVI 3.27646
AIRE autoimmune regulator 3.27646
ASGR2 asialoglycoprotein receptor 2 3.27646
SP5 Sp5 transcription factor 3.27646
AIPL1 aryl hydrocarbon receptor interacting protein-like 1 3.27646
MYL4 myosin, light chain 4, alkali; atrial, embryonic 3.27646
OIT3 oncoprotein induced transcript 3 3.27646
THEMIS thymocyte selection associated 3.27646
TREML1 triggering receptor expressed on myeloid cells-like 1 3.27646
SETSIP SET-like protein 3.27646
RFX6 regulatory factor X, 6 3.27646
GIMAP4 GTPase, IMAP family member 4 3.27646
OTUD6A OTU deubiquitinase 6A 3.27646
FAM221B family with sequence similarity 221, member B 3.27646
ADAMTSL5 ADAMTS-like 5 3.27646
MROH2B maestro heat-like repeat family member 2B 3.27646
FABP12 fatty acid binding protein 12 3.27646
F2 coagulation factor II (thrombin) 3.27646
LACTBL1 lactamase, beta-like 1 3.27646
MAGED4 melanoma antigen family D4 3.27646
GMNN geminin, DNA replication inhibitor 3.27646
MISP mitotic spindle positioning 3.27646
PRDM8 PR domain containing 8 3.27646
CIMIP1 ciliary microtubule inner protein 1 3.27646
TBXT T-box transcription factor T 3.27646
CENPS centromere protein S 3.27646
SELE selectin E 3.27646
ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 3.27646
OPRM1 opioid receptor, mu 1 3.27646
ALX4 ALX homeobox 4 3.27646
KRT86 keratin 86, type II 3.27646
PIRT phosphoinositide-interacting regulator of transient receptor potential channels 3.27646
BDKRB1 bradykinin receptor B1 3.27646
HNF1B HNF1 homeobox B 3.27646
ROPN1 rhophilin associated tail protein 1 3.27646
MINAR2 membrane integral NOTCH2 associated receptor 2 3.27646
RTL9 retrotransposon Gag like 9 3.27646
PLPP4 phospholipid phosphatase 4 3.27646
EXOC1L exocyst complex component 1 like 3.27646
CIMIP3 ciliary microtubule inner protein 3 3.27646
LOC128125822 uncharacterized LOC128125822 3.27646
AKAIN1 A-kinase anchor inhibitor 1 3.27646
POU2AF2 POU class 2 homeobox associating factor 2 3.27646
MEIOSIN meiosis initiator 3.27646
TPRX2 tetrapeptide repeat homeobox 2 3.27646
ODAPH odontogenesis associated phosphoprotein 3.27646
CATSPERZ catsper channel auxiliary subunit zeta 3.27646
ELOA2 elongin A2 3.27646
CCDC190 coiled-coil domain containing 190 3.27646
LRRC71 leucine rich repeat containing 71 3.27646
FGFBP2 fibroblast growth factor binding protein 2 3.27646
OR8D4 olfactory receptor, family 8, subfamily D, member 4 3.27646
OR7C1 olfactory receptor, family 7, subfamily C, member 1 3.27646
CCR6 chemokine (C-C motif) receptor 6 3.27646
MAGEB6 melanoma antigen family B6 3.27646
CLDN5 claudin 5 3.27646
CLDN2 claudin 2 3.27646
CLDN9 claudin 9 3.27646
TUBA3D tubulin, alpha 3d 3.27646
TMIE transmembrane inner ear 3.27646
PTPRQ protein tyrosine phosphatase, receptor type, Q 3.27646
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 3.27646
FCER2 Fc fragment of IgE, low affinity II, receptor for (CD23) 3.27646
ANXA10 annexin A10 3.27646
LRIT3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 3.27646
ABHD15 abhydrolase domain containing 15 3.27646
ALG10B ALG10B, alpha-1,2-glucosyltransferase 3.27646
SAA2 serum amyloid A2 3.27646
MS4A13 membrane-spanning 4-domains, subfamily A, member 13 3.27646
CDKN2A cyclin-dependent kinase inhibitor 2A 3.27646
C1QL2 complement component 1, q subcomponent-like 2 3.27646
CFAP45 cilia and flagella associated protein 45 3.27646
NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 3.27646
ZNF575 zinc finger protein 575 3.27646
CCDC92 coiled-coil domain containing 92 3.27646
TACSTD2 tumor-associated calcium signal transducer 2 3.27646
PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 3.27646
C5AR2 complement component 5a receptor 2 3.27646
KCNA6 potassium channel, voltage gated shaker related subfamily A, member 6 3.27646
DNAH12 dynein, axonemal, heavy chain 12 3.27646
OR9A4 olfactory receptor, family 9, subfamily A, member 4 3.27646
CXCR5 chemokine (C-X-C motif) receptor 5 3.27646
SPATA31E1 SPATA31 subfamily E, member 1 3.27646
DGCR6 DiGeorge syndrome critical region gene 6 3.27646
DUOX2 dual oxidase 2 3.27646
HPD 4-hydroxyphenylpyruvate dioxygenase 3.27646
TDRD10 tudor domain containing 10 3.27646
APOC2 apolipoprotein C-II 3.27646
OXGR1 oxoglutarate (alpha-ketoglutarate) receptor 1 3.27646
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 3.27646
TMIGD3 transmembrane and immunoglobulin domain containing 3 3.27646
FZD1 frizzled class receptor 1 3.27646
SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin) 3.27646
SLC25A52 solute carrier family 25, member 52 3.27646
RANBP3L RAN binding protein 3-like 3.27646
PCDHGB4 protocadherin gamma subfamily B, 4 3.27646
A3GALT2 alpha 1,3-galactosyltransferase 2 3.27646
MYF6 myogenic factor 6 (herculin) 3.27646
CNTF ciliary neurotrophic factor 3.27646
ERICH4 glutamate-rich 4 3.27646
CLEC4G C-type lectin domain family 4, member G 3.27646
PSKH2 protein serine kinase H2 3.27646
LRRC26 leucine rich repeat containing 26 3.27646
LGALS12 lectin, galactoside-binding, soluble, 12 3.27646
IGIP IgA-inducing protein 3.27646
KCNA5 potassium channel, voltage gated shaker related subfamily A, member 5 3.27646
PCDH20 protocadherin 20 3.27646
CNR2 cannabinoid receptor 2 (macrophage) 3.27646
C1ORF185 chromosome 1 open reading frame 185 3.27646
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal 3.27646
MB myoglobin 3.27646
GJC2 gap junction protein, gamma 2, 47kDa 3.27646
HIGD2B HIG1 hypoxia inducible domain family, member 2B 3.27646
DLX2 distal-less homeobox 2 3.27646
C22ORF42 chromosome 22 open reading frame 42 3.27646
DRD2 dopamine receptor D2 3.27646
MUC17 mucin 17, cell surface associated 3.27646
TEKT1 tektin 1 3.27646
HELT helt bHLH transcription factor 3.27646
SLC22A24 solute carrier family 22, member 24 3.27646
KLK6 kallikrein-related peptidase 6 3.27646
CHIT1 chitinase 1 (chitotriosidase) 3.27646
FGG fibrinogen gamma chain 3.27646
DMRT1 doublesex and mab-3 related transcription factor 1 3.27646
GOLGA8N golgin A8 family, member N 3.27646
CDCP2 CUB domain containing protein 2 3.27646
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled 3.27646
CCNO cyclin O 3.27646
PITX3 paired-like homeodomain 3 3.27646
FGL2 fibrinogen-like 2 3.27646
GREM1 gremlin 1, DAN family BMP antagonist 3.27646
BPIFC BPI fold containing family C 3.27646
TGM1 transglutaminase 1 3.27646
APOA5 apolipoprotein A-V 3.27646
IRX1 iroquois homeobox 1 3.27646
PADI1 peptidyl arginine deiminase, type I 3.27646
ANGPTL5 angiopoietin-like 5 3.27646
NRGN neurogranin (protein kinase C substrate, RC3) 3.27646
TRIM64B tripartite motif containing 64B 3.27646
STOML3 stomatin (EPB72)-like 3 3.27646
GRAPL GRB2-related adaptor protein-like 3.27646
FGF9 fibroblast growth factor 9 3.27646
NR4A3 nuclear receptor subfamily 4, group A, member 3 3.27646
SLC22A6 solute carrier family 22 (organic anion transporter), member 6 3.27646
AMER3 APC membrane recruitment protein 3 3.27646
ACRBP acrosin binding protein 3.27646
PRDM1 PR domain containing 1, with ZNF domain 3.27646
NUTM2F NUT family member 2F 3.27646
ABCA10 ATP-binding cassette, sub-family A (ABC1), member 10 3.27646
GRM6 glutamate receptor, metabotropic 6 3.27646
SPNS3 spinster homolog 3 (Drosophila) 3.27646
HENMT1 HEN1 methyltransferase homolog 1 (Arabidopsis) 3.25916
BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) 3.19221
RUNX3 runt-related transcription factor 3 3.12908
FCRLB Fc receptor-like B 3.12908
FIGNL2 fidgetin-like 2 3.04141
PEX12 peroxisomal biogenesis factor 12 3.00139
ADAT3 adenosine deaminase, tRNA-specific 3 2.96586
PARVB parvin, beta 2.94324
NDRG4 NDRG family member 4 2.88496
ASF1B anti-silencing function 1B histone chaperone 2.7962
SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2.76512
SOBP sine oculis binding protein homolog (Drosophila) 2.73917
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 2.73901
DPEP3 dipeptidase 3 2.71248
ZNF317 zinc finger protein 317 2.68633
ANKRD7 ankyrin repeat domain 7 2.68095
GPN3 GPN-loop GTPase 3 2.66942
LDLR low density lipoprotein receptor 2.66249
CEP162 centrosomal protein 162kDa 2.65428
TOR3A torsin family 3, member A 2.61767
TNS3 tensin 3 2.57397
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3 2.56689
TMEM200A transmembrane protein 200A 2.54861
PARD3B par-3 family cell polarity regulator beta 2.54744
SELENOI selenoprotein I 2.54208
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2.46586
RAB2B RAB2B, member RAS oncogene family 2.46181
KLHL25 kelch-like family member 25 2.42867
PDZRN4 PDZ domain containing ring finger 4 2.39016
KCNF1 potassium channel, voltage gated modifier subfamily F, member 1 2.39016
DHX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 2.38605
CTCFL CCCTC-binding factor (zinc finger protein)-like 2.35757
CDKL3 cyclin-dependent kinase-like 3 2.35089
JSRP1 junctional sarcoplasmic reticulum protein 1 2.34922
LEP leptin 2.34922
TNS2 tensin 2 2.34922
KLK4 kallikrein-related peptidase 4 2.34922
EVI2B ecotropic viral integration site 2B 2.34922
SNX32 sorting nexin 32 2.34895
ZNG1C Zn regulated GTPase metalloprotein activator 1C 2.31842
SQSTM1 sequestosome 1 2.30039
SLC35F5 solute carrier family 35, member F5 2.28488
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2.27934
MKNK1 MAP kinase interacting serine/threonine kinase 1 2.26657
STXBP1 syntaxin binding protein 1 2.23921
ERP44 endoplasmic reticulum protein 44 2.23396
NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 2.23153
PRR14 proline rich 14 2.23153
ZNF335 zinc finger protein 335 2.20703
STN1 STN1 subunit of CST complex 2.20471
AMZ2 archaelysin family metallopeptidase 2 2.19929
PGGHG protein-glucosylgalactosylhydroxylysine glucosidase 2.19731
FBN3 fibrillin 3 2.1932
WBP11 WW domain binding protein 11 2.17674
RAB15 RAB15, member RAS oncogene family 2.17557
TFPI2 tissue factor pathway inhibitor 2 2.16491
CLDN20 claudin 20 2.15465
OTUD7A OTU deubiquitinase 7A 2.1432
ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough 2.13901
RAD1 RAD1 checkpoint DNA exonuclease 2.12391
ZNF518A zinc finger protein 518A 2.11932
GFM2 G elongation factor, mitochondrial 2 2.11932
ZFP82 ZFP82 zinc finger protein 2.114
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 2.11244
UNC5CL unc-5 homolog C (C. elegans)-like 2.10399
C19ORF47 chromosome 19 open reading frame 47 2.08704
SRC SRC proto-oncogene, non-receptor tyrosine kinase 2.08235
FMO4 flavin containing monooxygenase 4 2.08235
MED30 mediator complex subunit 30 2.07266
CCDC77 coiled-coil domain containing 77 2.07128
FBF1 Fas (TNFRSF6) binding factor 1 2.05952
OSGEPL1 O-sialoglycoprotein endopeptidase-like 1 2.02864
HPGD hydroxyprostaglandin dehydrogenase 15-(NAD) 2.01906
GPR75-ASB3 GPR75-ASB3 readthrough 2.01771
PPME1 protein phosphatase methylesterase 1 2.01611
CCDC90B coiled-coil domain containing 90B 2.01611
QRICH1 glutamine-rich 1 2.0092
AFTPH aftiphilin 2.00094

decreased expression

Symbol Name Standardized Value
KCNK13 potassium channel, two pore domain subfamily K, member 13 -3.27646
SSR4 signal sequence receptor, delta -3.27646
PRCD progressive rod-cone degeneration -3.27646
SLA Src-like-adaptor -3.27646
CLCN1 chloride channel, voltage-sensitive 1 -3.27646
SLC7A6 solute carrier family 7 (amino acid transporter light chain, y+L system), member 6 -3.23372
RPL10A ribosomal protein L10a -3.20371
ASB16 ankyrin repeat and SOCS box containing 16 -3.15726
GOLGA8H golgin A8 family, member H -3.11743
CCDC154 coiled-coil domain containing 154 -3.11743
PARP3 poly (ADP-ribose) polymerase family, member 3 -3.11743
SPTBN5 spectrin, beta, non-erythrocytic 5 -3.11743
SLC26A4 solute carrier family 26 (anion exchanger), member 4 -3.11743
DLX4 distal-less homeobox 4 -3.11743
GJB3 gap junction protein, beta 3, 31kDa -3.11743
CARD6 caspase recruitment domain family, member 6 -3.11743
SFN stratifin -3.11743
FGF18 fibroblast growth factor 18 -3.11743
SLCO1C1 solute carrier organic anion transporter family, member 1C1 -3.11743
FAM90A1 family with sequence similarity 90, member A1 -3.11743
PANO1 proapoptotic nucleolar protein 1 -3.11743
TNMD tenomodulin -3.11743
KCNE2 potassium channel, voltage gated subfamily E regulatory beta subunit 2 -3.11743
SGK2 serum/glucocorticoid regulated kinase 2 -3.11743
GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 -3.11743
BTNL8 butyrophilin-like 8 -3.11743
KLHL34 kelch-like family member 34 -3.11743
REP15 RAB15 effector protein -3.11743
DDTL D-dopachrome tautomerase-like -3.11743
UTS2B urotensin 2B -3.11743
CRYBA4 crystallin, beta A4 -3.11743
FMO1 flavin containing monooxygenase 1 -3.11743
ETV3L ets variant 3-like -3.11743
CCDC78 coiled-coil domain containing 78 -3.11743
ERFE erythroferrone -3.11743
S100B S100 calcium binding protein B -3.11743
OR2AT4 olfactory receptor, family 2, subfamily AT, member 4 -3.11743
CAGE1 cancer antigen 1 -3.11743
ZFP28 ZFP28 zinc finger protein -3.11743
SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 -3.11743
LOC124900192 uncharacterized LOC124900192 -3.11743
CAMK2B calcium/calmodulin-dependent protein kinase II beta -3.11743
FAM163A family with sequence similarity 163, member A -3.11743
DCBLD2 discoidin, CUB and LCCL domain containing 2 -3.02196
RASSF9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 -2.97201
HSBP1L1 heat shock factor binding protein 1-like 1 -2.97201
PRSS35 protease, serine, 35 -2.97201
CFAP73 cilia and flagella associated protein 73 -2.96036
GPR82 G protein-coupled receptor 82 -2.95566
TULP2 tubby like protein 2 -2.95566
C9ORF78 chromosome 9 open reading frame 78 -2.84924
METTL2B methyltransferase like 2B -2.80556
TMEM255B transmembrane protein 255B -2.73917
CCDC125 coiled-coil domain containing 125 -2.66249
RMC1 regulator of MON1-CCZ1 -2.58831
YTHDF2 YTH N(6)-methyladenosine RNA binding protein 2 -2.57273
PDZD7 PDZ domain containing 7 -2.54257
TGFB2 transforming growth factor, beta 2 -2.54257
GPR162 G protein-coupled receptor 162 -2.54257
ARID3B AT rich interactive domain 3B (BRIGHT-like) -2.5125
ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A -2.481
MED16 mediator complex subunit 16 -2.43594
RUNDC3A RUN domain containing 3A -2.42487
ACTG2 actin, gamma 2, smooth muscle, enteric -2.42487
PTGER3 prostaglandin E receptor 3 (subtype EP3) -2.42487
C12ORF76 chromosome 12 open reading frame 76 -2.38507
NUDT12 nudix (nucleoside diphosphate linked moiety X)-type motif 12 -2.37547
SLCO4A1 solute carrier organic anion transporter family, member 4A1 -2.36731
ZNF202 zinc finger protein 202 -2.34671
RPL17 ribosomal protein L17 -2.3346
TDGF1 teratocarcinoma-derived growth factor 1 -2.3346
GPS2 G protein pathway suppressor 2 -2.32895
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 -2.31666
FBXW5 F-box and WD repeat domain containing 5 -2.30549
ASRGL1 asparaginase like 1 -2.30295
DNAI1 dynein, axonemal, intermediate chain 1 -2.30295
FASTKD3 FAST kinase domains 3 -2.30039
ZFHX2 zinc finger homeobox 2 -2.27934
SLC7A14 solute carrier family 7, member 14 -2.24102
MORC4 MORC family CW-type zinc finger 4 -2.23865
RPL28 ribosomal protein L28 -2.23153
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 -2.22366
UBE2S ubiquitin-conjugating enzyme E2S -2.21828
TPI1 triosephosphate isomerase 1 -2.20471
OXSM 3-oxoacyl-ACP synthase, mitochondrial -2.20238
MPLKIP M-phase specific PLK1 interacting protein -2.19929
RPS14 ribosomal protein S14 -2.19848
RPS10 ribosomal protein S10 -2.19146
RAB35 RAB35, member RAS oncogene family -2.19081
MAP2K1 mitogen-activated protein kinase kinase 1 -2.19081
CALB1 calbindin 1, 28kDa -2.17826
SFRP5 secreted frizzled-related protein 5 -2.17557
GNMT glycine N-methyltransferase -2.17557
BASP1 brain abundant, membrane attached signal protein 1 -2.17557
DUOX1 dual oxidase 1 -2.17557
RAG2 recombination activating gene 2 -2.17557
TRIB3 tribbles pseudokinase 3 -2.17557
ALDH4A1 aldehyde dehydrogenase 4 family, member A1 -2.1605
SNAI1 snail family zinc finger 1 -2.15745
SELENBP1 selenium binding protein 1 -2.1432
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 -2.13295
ALG8 ALG8, alpha-1,3-glucosyltransferase -2.12717
INCENP inner centromere protein antigens 135/155kDa -2.11932
SAXO2 stabilizer of axonemal microtubules 2 -2.1085
TSPAN2 tetraspanin 2 -2.10688
ATG2A autophagy related 2A -2.08235
VEGFA vascular endothelial growth factor A -2.08235
POU5F1 POU class 5 homeobox 1 -2.08066
ERAP1 endoplasmic reticulum aminopeptidase 1 -2.07683
PEX39 peroxisomal biogenesis factor 39 -2.07266
SURF6 surfeit 6 -2.03879
CUL3 cullin 3 -2.01771
MTFMT mitochondrial methionyl-tRNA formyltransferase -2.01378
NANS N-acetylneuraminic acid synthase -2.01378
CHGA chromogranin A -2.01235
MRPS36 mitochondrial ribosomal protein S36 -2.01046