LIMD1 Gene Set

Dataset CM4AI KOLF21J CRISPRi Gene Perturbation Atlas
Category transcriptomics
Type gene perturbation
Description LIM domains containing 1| (NCBI Entrez Gene Database, 8994)
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Genes

315 genes differentially expressed following the LIMD1 gene perturbation from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas.

increased expression

Symbol Name Standardized Value
RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 3.33367
BTNL8 butyrophilin-like 8 3.33367
RAPSN receptor-associated protein of the synapse 3.33367
ADRB1 adrenoceptor beta 1 3.33367
ASB5 ankyrin repeat and SOCS box containing 5 3.33367
RESP18 regulated endocrine-specific protein 18 3.33367
SPATA25 spermatogenesis associated 25 3.33367
SCN3A sodium channel, voltage gated, type III alpha subunit 3.33367
ANKRD34A ankyrin repeat domain 34A 3.33367
GCOM1 GRINL1A complex locus 1 3.33367
CSF3R colony stimulating factor 3 receptor (granulocyte) 3.33367
ICAM1 intercellular adhesion molecule 1 3.33367
FGL1 fibrinogen-like 1 3.33367
ESR1 estrogen receptor 1 3.33367
ARHGAP40 Rho GTPase activating protein 40 3.33367
ZNF831 zinc finger protein 831 3.33367
RHOXF2 Rhox homeobox family, member 2 3.33367
SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 3.27188
SLC35G5 solute carrier family 35, member G5 3.27188
FGF21 fibroblast growth factor 21 3.27188
HES7 hes family bHLH transcription factor 7 3.27188
ZFP57 ZFP57 zinc finger protein 3.27188
GLUD2 glutamate dehydrogenase 2 3.27188
MS4A4E membrane-spanning 4-domains, subfamily A, member 4E 3.27188
DUXB double homeobox B 3.27188
SDR9C7 short chain dehydrogenase/reductase family 9C, member 7 3.27188
ZNF575 zinc finger protein 575 3.27188
CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 3.27188
PRELP proline/arginine-rich end leucine-rich repeat protein 3.27188
TRIM15 tripartite motif containing 15 3.27188
NOD2 nucleotide-binding oligomerization domain containing 2 3.27188
TBX15 T-box 15 3.27188
MUC1 mucin 1, cell surface associated 3.27188
TTLL8 tubulin tyrosine ligase-like family member 8 3.27188
DLX4 distal-less homeobox 4 3.27188
COPZ2 coatomer protein complex, subunit zeta 2 3.27188
RFX6 regulatory factor X, 6 3.27188
THEMIS thymocyte selection associated 3.27188
GALR3 galanin receptor 3 3.27188
ZAP70 zeta-chain (TCR) associated protein kinase 70kDa 3.27188
BSX brain-specific homeobox 3.27188
CLEC19A C-type lectin domain family 19, member A 3.27188
SFTPB surfactant protein B 3.27188
SIRPB2 signal-regulatory protein beta 2 3.27188
KCNJ1 potassium channel, inwardly rectifying subfamily J, member 1 3.27188
ASB17 ankyrin repeat and SOCS box containing 17 3.27188
SPINT3 serine peptidase inhibitor, Kunitz type, 3 3.27188
PECAM1 platelet/endothelial cell adhesion molecule 1 3.27188
ARSF arylsulfatase F 3.27188
SPRR1B small proline-rich protein 1B 3.27188
STRA8 stimulated by retinoic acid 8 3.27188
TNFSF4 tumor necrosis factor (ligand) superfamily, member 4 3.27188
OR9H1 olfactory receptor family 9 subfamily H member 1 pseudogene (gene/pseudogene) 3.27188
RIPK4 receptor-interacting serine-threonine kinase 4 3.27188
ADGRG7 adhesion G protein-coupled receptor G7 3.27188
ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) 3.27188
FCMR Fc fragment of IgM receptor 3.27188
TBX10 T-box 10 3.27188
SYT15 synaptotagmin XV 3.27188
PNPLA1 patatin-like phospholipase domain containing 1 3.27188
PABPC1L2B poly(A) binding protein, cytoplasmic 1-like 2B 3.27188
NECTIN4 nectin cell adhesion molecule 4 3.27188
PLAAT2 phospholipase A and acyltransferase 2 3.27188
CIMIP7 ciliary microtubule inner protein 7 3.27188
TEX54 testis expressed 54 3.27188
CTXND1 cortexin domain containing 1 3.27188
RHEX regulator of hemoglobinization and erythroid cell expansion 3.27188
SMIM31 small integral membrane protein 31 3.27188
MYMK myomaker, myoblast fusion factor 3.27188
TMEM225B transmembrane protein 225B 3.27188
CABCOCO1 ciliary associated calcium binding coiled-coil 1 3.27188
S100G S100 calcium binding protein G 3.27188
CCR8 chemokine (C-C motif) receptor 8 3.27188
EXOC3L4 exocyst complex component 3-like 4 3.27188
CLDN9 claudin 9 3.27188
PTPRQ protein tyrosine phosphatase, receptor type, Q 3.27188
PCDHA3 protocadherin alpha 3 3.27188
PCDHA2 protocadherin alpha 2 3.27188
IZUMO4 IZUMO family member 4 3.27188
ERAS ES cell expressed Ras 3.27188
USH1G Usher syndrome 1G (autosomal recessive) 3.27188
SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 3.27188
IL31RA interleukin 31 receptor A 3.27188
OR51B5 olfactory receptor, family 51, subfamily B, member 5 3.27188
GJD4 gap junction protein, delta 4, 40.1kDa 3.27188
SLC12A3 solute carrier family 12 (sodium/chloride transporter), member 3 3.27188
INSRR insulin receptor-related receptor 3.27188
TBX3 T-box 3 3.27188
SH3TC1 SH3 domain and tetratricopeptide repeats 1 3.27188
MIP major intrinsic protein of lens fiber 3.27188
MYH13 myosin, heavy chain 13, skeletal muscle 3.27188
DMBX1 diencephalon/mesencephalon homeobox 1 3.27188
FABP9 fatty acid binding protein 9, testis 3.27188
PRR29 proline rich 29 3.27188
CD52 CD52 molecule 3.27188
KRT15 keratin 15, type I 3.27188
P2RX1 purinergic receptor P2X, ligand gated ion channel, 1 3.27188
CMTM5 CKLF-like MARVEL transmembrane domain containing 5 3.27188
FBXO40 F-box protein 40 3.27188
SPRN shadow of prion protein homolog (zebrafish) 3.27188
TOPAZ1 testis and ovary specific PAZ domain containing 1 3.27188
CHRNA6 cholinergic receptor, nicotinic, alpha 6 (neuronal) 3.27188
KLHL41 kelch-like family member 41 3.27188
PTPN20 protein tyrosine phosphatase, non-receptor type 20 3.27188
CARD9 caspase recruitment domain family, member 9 3.27188
PLGLB1 plasminogen-like B1 3.27188
EPX eosinophil peroxidase 3.27188
SLC31A2 solute carrier family 31 (copper transporter), member 2 3.27188
SLC4A1 solute carrier family 4 (anion exchanger), member 1 (Diego blood group) 3.27188
POTEF POTE ankyrin domain family, member F 3.27188
MAGEA11 melanoma antigen family A11 3.27188
KCNN4 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 4 3.27188
VWA3A von Willebrand factor A domain containing 3A 3.27188
SERINC4 serine incorporator 4 3.27188
HUS1B HUS1 checkpoint homolog b (S. pombe) 3.27188
CYS1 cystin 1 3.27188
URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase 3.27188
FAM163A family with sequence similarity 163, member A 3.27188
EVPLL envoplakin-like 3.27188
P2RY12 purinergic receptor P2Y, G-protein coupled, 12 3.27188
CFI complement factor I 3.27188
HCRT hypocretin (orexin) neuropeptide precursor 3.27188
CCDC185 coiled-coil domain containing 185 3.27188
TAT tyrosine aminotransferase 3.27188
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon 3.27188
ZSCAN4 zinc finger and SCAN domain containing 4 3.27188
KCNK4 potassium channel, two pore domain subfamily K, member 4 3.27188
CCDC154 coiled-coil domain containing 154 3.27188
PXT1 peroxisomal, testis specific 1 3.27188
GFRAL GDNF family receptor alpha like 3.27188
CHRM4 cholinergic receptor, muscarinic 4 3.27188
CD27 CD27 molecule 3.27188
OR14A2 olfactory receptor, family 14, subfamily A, member 2 3.27188
GRM6 glutamate receptor, metabotropic 6 3.27188
SLC38A11 solute carrier family 38, member 11 3.27188
CD33 CD33 molecule 3.27188
CEACAM20 carcinoembryonic antigen-related cell adhesion molecule 20 3.27188
PITX3 paired-like homeodomain 3 3.27188
DMRTB1 DMRT-like family B with proline-rich C-terminal, 1 3.27188
NLRP7 NLR family, pyrin domain containing 7 3.27188
ICAM2 intercellular adhesion molecule 2 3.27188
TDO2 tryptophan 2,3-dioxygenase 3.27188
PCDHAC1 protocadherin alpha subfamily C, 1 3.27188
CPN2 carboxypeptidase N, polypeptide 2 3.27188
EMCN endomucin 3.27188
PTPN7 protein tyrosine phosphatase, non-receptor type 7 3.27188
LRRC74B leucine rich repeat containing 74B 3.27188
FGF10 fibroblast growth factor 10 3.27188
CTSF cathepsin F 3.27188
SLC38A8 solute carrier family 38, member 8 3.27188
ZBED6 zinc finger, BED-type containing 6 3.27188
RNF223 ring finger protein 223 3.27188
SIDT1 SID1 transmembrane family, member 1 3.27188
SLC10A6 solute carrier family 10 (sodium/bile acid cotransporter), member 6 3.27188
ENKD1 enkurin domain containing 1 3.27047
DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) 3.24348
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 3.15774
MINAR1 membrane integral NOTCH2 associated receptor 1 3.15355
APOA1 apolipoprotein A-I 3.13281
VILL villin-like 3.13281
ARL11 ADP-ribosylation factor-like 11 3.13281
DUS4L dihydrouridine synthase 4-like (S. cerevisiae) 2.95062
TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 2.75685
ENOX1 ecto-NOX disulfide-thiol exchanger 1 2.75302
PIGW phosphatidylinositol glycan anchor biosynthesis, class W 2.72246
FOXO3B forkhead box O3B pseudogene 2.60633
MRPL46 mitochondrial ribosomal protein L46 2.50844
OPHN1 oligophrenin 1 2.47432
HPD 4-hydroxyphenylpyruvate dioxygenase 2.47341
GABRG1 gamma-aminobutyric acid (GABA) A receptor, gamma 1 2.47341
LRP1 low density lipoprotein receptor-related protein 1 2.46473
LRRC47 leucine rich repeat containing 47 2.45111
GCC2 GRIP and coiled-coil domain containing 2 2.4204
CA10 carbonic anhydrase X 2.40198
ALDOA aldolase A, fructose-bisphosphate 2.39894
KLF15 Kruppel-like factor 15 2.39636
UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 2.38414
SH2D5 SH2 domain containing 5 2.36531
PRTFDC1 phosphoribosyl transferase domain containing 1 2.34027
IRX1 iroquois homeobox 1 2.34027
GYS2 glycogen synthase 2 (liver) 2.34027
TENT5B terminal nucleotidyltransferase 5B 2.33222
POTEJ POTE ankyrin domain family, member J 2.32176
HORMAD2 HORMA domain containing 2 2.32176
TMEM209 transmembrane protein 209 2.32176
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 2.32014
LAPTM4A lysosomal protein transmembrane 4 alpha 2.29397
ZSCAN25 zinc finger and SCAN domain containing 25 2.29244
SH3BP4 SH3-domain binding protein 4 2.29244
TMEM217 transmembrane protein 217 2.29244
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 2.21603
GAS2 growth arrest-specific 2 2.19871
CPNE8 copine VIII 2.19118
ANGPT1 angiopoietin 1 2.19048
PTTG1 pituitary tumor-transforming 1 2.17249
PPP2R2D protein phosphatase 2, regulatory subunit B, delta 2.14993
SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 2.14981
PPP1R42 protein phosphatase 1, regulatory subunit 42 2.14039
TRIM71 tripartite motif containing 71, E3 ubiquitin protein ligase 2.14022
TDP1 tyrosyl-DNA phosphodiesterase 1 2.09439
PARP6 poly (ADP-ribose) polymerase family, member 6 2.08991
COL6A6 collagen, type VI, alpha 6 2.08236
CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 2.08236
DNAJC28 DnaJ (Hsp40) homolog, subfamily C, member 28 2.08236
REC114 REC114 meiotic recombination protein 2.08236
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1 2.08236
AFG2A AFG2 AAA ATPase homolog A 2.07764
CLIP3 CAP-GLY domain containing linker protein 3 2.0702
HAUS3 HAUS augmin-like complex, subunit 3 2.06173
PLK3 polo-like kinase 3 2.06163
SPAG4 sperm associated antigen 4 2.06163
SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter), member 1 2.06163
CUTA cutA divalent cation tolerance homolog (E. coli) 2.05932
TMEM178A transmembrane protein 178A 2.03621
TULP4 tubby like protein 4 2.00921
OCIAD1 OCIA domain containing 1 2.0048

decreased expression

Symbol Name Standardized Value
RASGEF1C RasGEF domain family, member 1C -3.33367
PCDHGA1 protocadherin gamma subfamily A, 1 -3.33367
P2RX3 purinergic receptor P2X, ligand gated ion channel, 3 -3.33367
KCNJ2 potassium channel, inwardly rectifying subfamily J, member 2 -3.33367
TMEM196 transmembrane protein 196 -3.33367
ZNF469 zinc finger protein 469 -3.33367
NSG2 neuronal vesicle trafficking associated 2 -3.33367
DNAH10 dynein, axonemal, heavy chain 10 -3.33367
CD1D CD1d molecule -3.33367
RPS27 ribosomal protein S27 -3.33367
TNNI1 troponin I type 1 (skeletal, slow) -3.27188
MSC musculin -3.27188
FLI1 Fli-1 proto-oncogene, ETS transcription factor -3.27188
ZNF230 zinc finger protein 230 -3.27188
USP50 ubiquitin specific peptidase 50 -3.27188
C9ORF152 chromosome 9 open reading frame 152 -3.27188
ABI3BP ABI family, member 3 (NESH) binding protein -3.27188
SLC22A6 solute carrier family 22 (organic anion transporter), member 6 -3.27188
ASCL3 achaete-scute family bHLH transcription factor 3 -3.27188
TMEM176A transmembrane protein 176A -3.27188
ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 -3.27188
GREP1 glycine rich extracellular protein 1 -3.27188
ALKAL1 ALK and LTK ligand 1 -3.27188
DPP7 dipeptidyl-peptidase 7 -3.27188
ENKUR enkurin, TRPC channel interacting protein -3.27188
MYPN myopalladin -3.27188
SHC4 SHC (Src homology 2 domain containing) family, member 4 -3.27188
ICOSLG inducible T-cell co-stimulator ligand -3.27188
CD48 CD48 molecule -3.27188
ACTL8 actin-like 8 -3.27188
OR2A7 olfactory receptor, family 2, subfamily A, member 7 -3.27188
PLEKHG7 pleckstrin homology domain containing, family G (with RhoGef domain) member 7 -3.27188
UPK3A uroplakin 3A -3.27188
ADAM21 ADAM metallopeptidase domain 21 -3.27188
ADRA1A adrenoceptor alpha 1A -3.27188
FADS6 fatty acid desaturase 6 -3.27188
MAMDC4 MAM domain containing 4 -3.27188
UHRF1 ubiquitin-like with PHD and ring finger domains 1 -3.27188
DCAF12L2 DDB1 and CUL4 associated factor 12-like 2 -3.27188
ABI3 ABI family, member 3 -3.27188
ABTB1 ankyrin repeat and BTB (POZ) domain containing 1 -3.27188
PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 -3.27188
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 -3.27188
CDK1 cyclin-dependent kinase 1 -3.25894
LTBP4 latent transforming growth factor beta binding protein 4 -3.25894
SLC27A3 solute carrier family 27 (fatty acid transporter), member 3 -3.24246
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog -3.1327
RPL34 ribosomal protein L34 -3.09505
BAZ1A bromodomain adjacent to zinc finger domain, 1A -3.07105
CLDN1 claudin 1 -3.06746
ZNF740 zinc finger protein 740 -3.03681
RPLP1 ribosomal protein, large, P1 -2.94038
SLC13A4 solute carrier family 13 (sodium/sulfate symporter), member 4 -2.83141
HSPB8 heat shock 22kDa protein 8 -2.76938
WDR88 WD repeat domain 88 -2.76938
YOD1 YOD1 deubiquitinase -2.76793
TTC27 tetratricopeptide repeat domain 27 -2.7432
TMEM266 transmembrane protein 266 -2.7254
TRAPPC2L trafficking protein particle complex 2-like -2.65448
HTR2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled -2.63704
GARNL3 GTPase activating Rap/RanGAP domain-like 3 -2.62945
AFF2 AF4/FMR2 family, member 2 -2.6219
BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 -2.55722
TGFBRAP1 transforming growth factor, beta receptor associated protein 1 -2.53788
CCDC117 coiled-coil domain containing 117 -2.52513
RGPD5 RANBP2-like and GRIP domain containing 5 -2.50844
C10ORF95 chromosome 10 open reading frame 95 -2.50698
VSIG10L V-set and immunoglobulin domain containing 10 like -2.47341
RPS28 ribosomal protein S28 -2.43719
MGAM maltase-glucoamylase -2.42063
CCDC194 coiled-coil domain containing 194 -2.42063
MRO maestro -2.4204
MACROD2 MACRO domain containing 2 -2.40198
CD101 CD101 molecule -2.39913
TBK1 TANK-binding kinase 1 -2.38488
KIAA0319 KIAA0319 -2.38308
POU2F1 POU class 2 homeobox 1 -2.34898
CCSER1 coiled-coil serine-rich protein 1 -2.33391
HS3ST4 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 -2.32716
PGM1 phosphoglucomutase 1 -2.32176
NSMAF neutral sphingomyelinase (N-SMase) activation associated factor -2.29244
RPL26 ribosomal protein L26 -2.29244
MPP1 membrane protein, palmitoylated 1, 55kDa -2.26402
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 -2.25864
OSBP oxysterol binding protein -2.25828
NBPF10 neuroblastoma breakpoint family, member 10 -2.24414
PCNT pericentrin -2.24272
SPIN4 spindlin family, member 4 -2.24232
RPL37A ribosomal protein L37a -2.23478
SIK3 SIK family kinase 3 -2.21603
QKI QKI, KH domain containing, RNA binding -2.21237
SERTAD3 SERTA domain containing 3 -2.17522
AADAT aminoadipate aminotransferase -2.14017
PDGFRA platelet-derived growth factor receptor, alpha polypeptide -2.1385
NMRAL1 NmrA-like family domain containing 1 -2.13376
CENPC centromere protein C -2.13093
MRNIP MRN complex interacting protein -2.08348
SOX8 SRY (sex determining region Y)-box 8 -2.07644
DMAC2L distal membrane arm assembly component 2 like -2.01721