LJI308_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description LJI308 perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the LJI308_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VIM vimentin 0.23577
AHNAK AHNAK nucleoprotein 0.0732132
FTL ferritin, light polypeptide 0.0704876
RPS4Y1 ribosomal protein S4, Y-linked 1 0.0700588
KTN1 kinectin 1 (kinesin receptor) 0.0662155
RPS12 ribosomal protein S12 0.0633872
TPM3 tropomyosin 3 0.0609586
FNDC3B fibronectin type III domain containing 3B 0.0607226
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0604656
PDE4D phosphodiesterase 4D, cAMP-specific 0.0581592
MCL1 myeloid cell leukemia 1 0.0577443
ANKRD11 ankyrin repeat domain 11 0.0548643
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0542591
RPL4 ribosomal protein L4 0.054177
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0529805
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0519074
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0513437
CAVIN1 caveolae associated protein 1 0.0507323
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0505371
NAP1L1 nucleosome assembly protein 1-like 1 0.0504923
ASPH aspartate beta-hydroxylase 0.0504622
TPI1 triosephosphate isomerase 1 0.0491755
SMOC1 SPARC related modular calcium binding 1 0.0488592
GRAMD1B GRAM domain containing 1B 0.0486576
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0476765
UBASH3B ubiquitin associated and SH3 domain containing B 0.0462079
PCBP2 poly(rC) binding protein 2 0.0448995
EIF4A1 eukaryotic translation initiation factor 4A1 0.0441219
LDHA lactate dehydrogenase A 0.043681
EIF1 eukaryotic translation initiation factor 1 0.0424149
ENO1 enolase 1, (alpha) 0.0420998
MYH9 myosin, heavy chain 9, non-muscle 0.0416566
RPS3 ribosomal protein S3 0.0415975
FLNB filamin B, beta 0.0413099
APP amyloid beta (A4) precursor protein 0.041201
TRIO trio Rho guanine nucleotide exchange factor 0.0403906
AKAP12 A kinase (PRKA) anchor protein 12 0.0402113
CALR calreticulin 0.0401283
MACF1 microtubule-actin crosslinking factor 1 0.0394734
KIF5B kinesin family member 5B 0.039173
SFTPA2 surfactant protein A2 0.0390171
DDIT4 DNA-damage-inducible transcript 4 0.0386943
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0368428
ACTN1 actinin, alpha 1 0.0363234
IGFBP3 insulin-like growth factor binding protein 3 0.0356896
PTPRJ protein tyrosine phosphatase, receptor type, J 0.0356521
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0356009
FMNL2 formin-like 2 0.035476
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0354245
NEGR1 neuronal growth regulator 1 0.034425
THSD4 thrombospondin, type I, domain containing 4 0.0342402
NR4A2 nuclear receptor subfamily 4, group A, member 2 0.0329753
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0328577
ZSWIM6 zinc finger, SWIM-type containing 6 0.0325942
MYOF myoferlin 0.0323981
LPP LIM domain containing preferred translocation partner in lipoma 0.0318997
S100A6 S100 calcium binding protein A6 0.0318289
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0314934
ACTG1 actin gamma 1 0.0312952
EXT1 exostosin glycosyltransferase 1 0.0312461
RACK1 receptor for activated C kinase 1 0.0309237
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0308161
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0307086
TPM4 tropomyosin 4 0.0303979
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0301539
DST dystonin 0.0297883
RPL37A ribosomal protein L37a 0.029757
CCPG1 cell cycle progression 1 0.029543
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0294511
ELL2 elongation factor, RNA polymerase II, 2 0.0294125
PTMA prothymosin, alpha 0.0292924
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0287523
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0284542
STC1 stanniocalcin 1 0.028341
JUN jun proto-oncogene 0.028185
PGK1 phosphoglycerate kinase 1 0.0280481
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0279228
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0271731
LMNA lamin A/C 0.0271718
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0270456
RPL3 ribosomal protein L3 0.0270397
TPD52 tumor protein D52 0.0268509
ANGPTL4 angiopoietin-like 4 0.0266325
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0264376
SQSTM1 sequestosome 1 0.0263136
IQGAP1 IQ motif containing GTPase activating protein 1 0.0260874
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0260784
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.0260695
MUSK muscle, skeletal, receptor tyrosine kinase 0.0260116
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0257124
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0251105
RPL26 ribosomal protein L26 0.0250675
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0250126
ZFAND3 zinc finger, AN1-type domain 3 0.0249961
RPL23 ribosomal protein L23 0.0245957
APLP2 amyloid beta (A4) precursor-like protein 2 0.0245557
RPL7 ribosomal protein L7 0.0242001
SOD2 superoxide dismutase 2, mitochondrial 0.0241685
RPL12 ribosomal protein L12 0.0239337
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.0237941

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.180279
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0634854
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0587012
WDR43 WD repeat domain 43 -0.0436327
PM20D1 peptidase M20 domain containing 1 -0.0383646
IGF2 insulin-like growth factor 2 -0.0367475
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0326223
MT1X metallothionein 1X -0.0307234
RPL35A ribosomal protein L35a -0.0293787
SLC38A2 solute carrier family 38, member 2 -0.0285508
DENND4A DENN/MADD domain containing 4A -0.0242523
RPS23 ribosomal protein S23 -0.0236569
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0217424
FTH1 ferritin, heavy polypeptide 1 -0.0211303
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0206586
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0201096
S100A10 S100 calcium binding protein A10 -0.0201003
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0198194
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha -0.018599
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0180845
MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like -0.0179662
RPS15 ribosomal protein S15 -0.0177238
ERBIN erbb2 interacting protein -0.0173681
ATP5F1B ATP synthase F1 subunit beta -0.0173146
MT1F metallothionein 1F -0.0165755
TFG TRK-fused gene -0.0162261
GPBP1 GC-rich promoter binding protein 1 -0.0161734
EIF5B eukaryotic translation initiation factor 5B -0.0158921
RCC1 regulator of chromosome condensation 1 -0.0156593
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0153093
SMAD2 SMAD family member 2 -0.0147475
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0146539
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) -0.0145324
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0142755
ACACA acetyl-CoA carboxylase alpha -0.0141768
PIBF1 progesterone immunomodulatory binding factor 1 -0.0141555
TRMT112 tRNA methyltransferase 11-2 homolog (S. cerevisiae) -0.0140644
ANKRD12 ankyrin repeat domain 12 -0.0138627
GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 -0.0130382
NOP58 NOP58 ribonucleoprotein -0.0129
NLK nemo-like kinase -0.0127854
RPL34 ribosomal protein L34 -0.0127285
PPP1R10 protein phosphatase 1, regulatory subunit 10 -0.0126727
CCNL1 cyclin L1 -0.0124506
ADNP activity-dependent neuroprotector homeobox -0.0123734
USP15 ubiquitin specific peptidase 15 -0.0122596
RPS29 ribosomal protein S29 -0.0120156
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0120101
DIDO1 death inducer-obliterator 1 -0.0118884
NDUFB3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa -0.0118265
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) -0.0118096
MAP7 microtubule-associated protein 7 -0.0116064
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 -0.0116051
GLIS3 GLIS family zinc finger 3 -0.0115166
RHOA ras homolog family member A -0.0114271
EIF3H eukaryotic translation initiation factor 3, subunit H -0.0113442
NUP58 nucleoporin 58 -0.0113383
RPS5 ribosomal protein S5 -0.0110665
TIPARP TCDD-inducible poly(ADP-ribose) polymerase -0.0109397
ARHGAP29 Rho GTPase activating protein 29 -0.0109144
CCT4 chaperonin containing TCP1, subunit 4 (delta) -0.0107336
ZBTB35 zinc finger and BTB domain containing 35 -0.0106406
PCNX4 pecanex 4 -0.0105596
RPTOR regulatory associated protein of MTOR, complex 1 -0.0105362
WNT2B wingless-type MMTV integration site family, member 2B -0.0103439
PAPOLA poly(A) polymerase alpha -0.0103181
ZMYM4 zinc finger, MYM-type 4 -0.0103011
INO80 INO80 complex subunit -0.0102157
RFFL ring finger and FYVE-like domain containing E3 ubiquitin protein ligase -0.0101067
NRG1 neuregulin 1 -0.0100814
PDIA5 protein disulfide isomerase family A, member 5 -0.00998014
CA2 carbonic anhydrase II -0.00990498
RPS25 ribosomal protein S25 -0.00980456
PFN1 profilin 1 -0.0097655
YTHDC1 YTH domain containing 1 -0.00974008
NAV3 neuron navigator 3 -0.00966223
ZC3H15 zinc finger CCCH-type containing 15 -0.00958603
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.00958267
LARP4B La ribonucleoprotein domain family, member 4B -0.00958096
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 -0.00957712
WBP11 WW domain binding protein 11 -0.00956008
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.00954009
TXNRD1 thioredoxin reductase 1 -0.00945677
ILF2 interleukin enhancer binding factor 2 -0.00939701
ECT2 epithelial cell transforming 2 -0.00928146
PPIL4 peptidylprolyl isomerase (cyclophilin)-like 4 -0.00921214
RPRD1B regulation of nuclear pre-mRNA domain containing 1B -0.00885639
CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta -0.00883865
RPL28 ribosomal protein L28 -0.00880189
GPATCH2L G patch domain containing 2-like -0.00877462
COX16 COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) -0.00871023
DYM dymeclin -0.00870257
THOC2 THO complex 2 -0.00860227
RFX3 regulatory factor X, 3 (influences HLA class II expression) -0.00857815
NEK10 NIMA-related kinase 10 -0.00856957
NSRP1 nuclear speckle splicing regulatory protein 1 -0.00848807
YLPM1 YLP motif containing 1 -0.0084729
UHMK1 U2AF homology motif (UHM) kinase 1 -0.00842324
SPIRE1 spire-type actin nucleation factor 1 -0.00836263
COG5 component of oligomeric golgi complex 5 -0.00831511