LMO4 Gene Set

Dataset CM4AI KOLF21J CRISPRi Gene Perturbation Atlas
Category transcriptomics
Type gene perturbation
Description LIM domain only 4|This gene encodes a cysteine-rich protein that contains two LIM domains but lacks a DNA-binding homeodomain. The encoded protein may play a role as a transcriptional regulator or as an oncogene. [provided by RefSeq, Aug 2008] (NCBI Entrez Gene Database, 8543)
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Genes

339 genes differentially expressed following the LMO4 gene perturbation from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas.

increased expression

Symbol Name Standardized Value
OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene) 2.84804
DPRX divergent-paired related homeobox 2.84804
GALNT15 polypeptide N-acetylgalactosaminyltransferase 15 2.84804
CDHR5 cadherin-related family member 5 2.84804
CARMIL3 capping protein regulator and myosin 1 linker 3 2.84804
TRIM73 tripartite motif containing 73 2.84804
CES4A carboxylesterase 4A 2.84804
CEP295NL CEP295 N-terminal like 2.84804
DEFB131B defensin beta 131B 2.84804
MYO1A myosin IA 2.84804
MYL3 myosin, light chain 3, alkali; ventricular, skeletal, slow 2.84804
SPI1 Spi-1 proto-oncogene 2.84804
GREM1 gremlin 1, DAN family BMP antagonist 2.84804
MEIOB meiosis specific with OB domains 2.84804
GPR37L1 G protein-coupled receptor 37 like 1 2.84804
SPINT4 serine peptidase inhibitor, Kunitz type 4 2.84804
TMEM52B transmembrane protein 52B 2.84804
FUT5 fucosyltransferase 5 (alpha (1,3) fucosyltransferase) 2.84804
MMP12 matrix metallopeptidase 12 2.84804
TPRX1 tetra-peptide repeat homeobox 1 2.84804
TMEM191B transmembrane protein 191B 2.84804
BTLA B and T lymphocyte associated 2.84804
FGR FGR proto-oncogene, Src family tyrosine kinase 2.84804
OSR2 odd-skipped related transciption factor 2 2.84804
TMPPE transmembrane protein with metallophosphoesterase domain 2.84804
GRM6 glutamate receptor, metabotropic 6 2.7774
FOXL1 forkhead box L1 2.7774
FAM81B family with sequence similarity 81, member B 2.7774
KRTAP12-1 keratin associated protein 12-1 2.7774
GPR75 G protein-coupled receptor 75 2.7774
MAP3K7CL MAP3K7 C-terminal like 2.7774
FAM161B family with sequence similarity 161, member B 2.7774
ASIC3 acid sensing (proton gated) ion channel 3 2.7774
LRRC73 leucine rich repeat containing 73 2.7774
FGFBP2 fibroblast growth factor binding protein 2 2.7774
LDHC lactate dehydrogenase C 2.7774
VCL vinculin 2.7774
DSPP dentin sialophosphoprotein 2.7774
ZNF683 zinc finger protein 683 2.7774
PRSS22 protease, serine, 22 2.7774
CDX2 caudal type homeobox 2 2.7774
CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) 2.7774
TBX20 T-box 20 2.7774
CEACAM21 carcinoembryonic antigen-related cell adhesion molecule 21 2.7774
KL klotho 2.7774
P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6 2.7774
NCBP2L nuclear cap binding protein subunit 2-like 2.7774
CLEC2A C-type lectin domain family 2, member A 2.7774
C9ORF152 chromosome 9 open reading frame 152 2.7774
NTRK2 neurotrophic tyrosine kinase, receptor, type 2 2.7774
PITX3 paired-like homeodomain 3 2.7774
CD34 CD34 molecule 2.7774
WFDC11 WAP four-disulfide core domain 11 2.7774
IGFL3 IGF-like family member 3 2.7774
C7ORF57 chromosome 7 open reading frame 57 2.7774
NUGGC nuclear GTPase, germinal center associated 2.7774
OTUD6A OTU deubiquitinase 6A 2.7774
ZNF280C zinc finger protein 280C 2.7774
TPTE transmembrane phosphatase with tensin homology 2.7774
TM4SF1 transmembrane 4 L six family member 1 2.7774
TNFSF18 tumor necrosis factor (ligand) superfamily, member 18 2.7774
TMEM151A transmembrane protein 151A 2.7774
SLC22A13 solute carrier family 22 (organic anion/urate transporter), member 13 2.7774
PAX2 paired box 2 2.7774
DNASE2B deoxyribonuclease II beta 2.7774
REPS2 RALBP1 associated Eps domain containing 2 2.7774
DAO D-amino-acid oxidase 2.7774
FFAR4 free fatty acid receptor 4 2.7774
ZIC4 Zic family member 4 2.7774
GJB4 gap junction protein, beta 4, 30.3kDa 2.7774
USP26 ubiquitin specific peptidase 26 2.7774
TRPV3 transient receptor potential cation channel, subfamily V, member 3 2.7774
CACNG2 calcium channel, voltage-dependent, gamma subunit 2 2.7774
MPO myeloperoxidase 2.7774
CORO6 coronin 6 2.7774
KRT78 keratin 78, type II 2.7774
CCR4 chemokine (C-C motif) receptor 4 2.7774
LRRC63 leucine rich repeat containing 63 2.7774
GJD2 gap junction protein, delta 2, 36kDa 2.7774
C1QTNF8 C1q and tumor necrosis factor related protein 8 2.7774
OR52A5 olfactory receptor, family 52, subfamily A, member 5 2.7774
CD1C CD1c molecule 2.7774
MIA melanoma inhibitory activity 2.7774
TRIM15 tripartite motif containing 15 2.7774
TPSD1 tryptase delta 1 2.7774
HAS1 hyaluronan synthase 1 2.7774
MEOX1 mesenchyme homeobox 1 2.7774
CIMAP1A ciliary microtubule associated protein 1A 2.7774
TEX13C TEX13 family member C 2.7774
GARIN6 golgi associated RAB2 interactor family member 6 2.7774
SVOP SV2 related protein homolog (rat) 2.7774
KLK15 kallikrein-related peptidase 15 2.7774
CER1 cerberus 1, DAN family BMP antagonist 2.7774
LRTM3 leucine rich repeat transmembrane protein 3 2.7774
SEC14L3 SEC14-like 3 (S. cerevisiae) 2.7774
RSPH10B radial spoke head 10 homolog B (Chlamydomonas) 2.7774
SPDYE9 speedy/RINGO cell cycle regulator family member E9 2.7774
COX6A2 cytochrome c oxidase subunit VIa polypeptide 2 2.7774
POU2AF1 POU class 2 associating factor 1 2.7774
MAB21L1 mab-21-like 1 (C. elegans) 2.7774
CD248 CD248 molecule, endosialin 2.7774
ELOA2 elongin A2 2.7774
TMEM204 transmembrane protein 204 2.7774
KLF1 Kruppel-like factor 1 (erythroid) 2.7774
LY96 lymphocyte antigen 96 2.7774
RGCC regulator of cell cycle 2.7774
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 2.7774
CIMIP2A ciliary microtubule inner protein 2A 2.7774
ANKRD42-DT ANKRD42 divergent transcript 2.7774
H4C14 H4 clustered histone 14 2.7774
RIPK3 receptor-interacting serine-threonine kinase 3 2.7774
RBBP8NL RBBP8 N-terminal like 2.7774
CFAP73 cilia and flagella associated protein 73 2.7774
AKR1C8 aldo-keto reductase family 1 member C8 2.7774
NT5C1B 5'-nucleotidase, cytosolic IB 2.7774
DLX3 distal-less homeobox 3 2.7774
CRHBP corticotropin releasing hormone binding protein 2.7774
SLC35E2B solute carrier family 35, member E2B 2.7774
CDH17 cadherin 17, LI cadherin (liver-intestine) 2.7774
GFRAL GDNF family receptor alpha like 2.7774
MORN5 MORN repeat containing 5 2.7774
RUSC1 RUN and SH3 domain containing 1 2.7774
ZC3H12D zinc finger CCCH-type containing 12D 2.7774
FYB1 FYN binding protein 1 2.7774
GLOD5 glyoxalase domain containing 5 2.7774
CRYBB3 crystallin, beta B3 2.7774
HSF4 heat shock transcription factor 4 2.7774
ZNF471 zinc finger protein 471 2.7774
PRSS55 protease, serine, 55 2.7774
TAF9B TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa 2.7774
MT1A metallothionein 1A 2.7774
FGF18 fibroblast growth factor 18 2.7774
IFIT1B interferon-induced protein with tetratricopeptide repeats 1B 2.7774
RHAG Rh-associated glycoprotein 2.7774
BDKRB2 bradykinin receptor B2 2.7774
ZBED6 zinc finger, BED-type containing 6 2.7774
DOK7 docking protein 7 2.7774
SPATA22 spermatogenesis associated 22 2.7774
MAGEA12 melanoma antigen family A12 2.7774
GCSAM germinal center-associated, signaling and motility 2.7774
GATA2 GATA binding protein 2 2.7774
TTC36 tetratricopeptide repeat domain 36 2.7774
OR2T12 olfactory receptor, family 2, subfamily T, member 12 2.7774
BMX BMX non-receptor tyrosine kinase 2.7774
MBOAT4 membrane bound O-acyltransferase domain containing 4 2.7774
HHLA2 HERV-H LTR-associating 2 2.7774
ADORA3 adenosine A3 receptor 2.7774
BTNL8 butyrophilin-like 8 2.7774
BTNL3 butyrophilin-like 3 2.7774
KCNS2 potassium voltage-gated channel, modifier subfamily S, member 2 2.7774
STING1 stimulator of interferon response cGAMP interactor 1 2.7774
UBQLN3 ubiquilin 3 2.7774
H2BC1 H2B clustered histone 1 2.7774
KY kyphoscoliosis peptidase 2.7774
YIPF7 Yip1 domain family, member 7 2.7774
ROPN1L rhophilin associated tail protein 1-like 2.7774
ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 2.7774
LTB4R2 leukotriene B4 receptor 2 2.7774
BRDT bromodomain, testis-specific 2.7774
AKR1B15 aldo-keto reductase family 1, member B15 2.7774
TAS2R43 taste receptor, type 2, member 43 2.7774
ESR1 estrogen receptor 1 2.69839
DCAF16 DDB1 and CUL4 associated factor 16 2.69839
AGBL1 ATP/GTP binding protein-like 1 2.69839
CPTP ceramide-1-phosphate transfer protein 2.69839
SLC28A1 solute carrier family 28 (concentrative nucleoside transporter), member 1 2.69839
PTGER3 prostaglandin E receptor 3 (subtype EP3) 2.69839
HES4 hes family bHLH transcription factor 4 2.69839
SCAMP4 secretory carrier membrane protein 4 2.69784
ADCY2 adenylate cyclase 2 (brain) 2.59595
LINGO1 leucine rich repeat and Ig domain containing 1 2.57999
MPV17L2 MPV17 mitochondrial membrane protein-like 2 2.56179
RAD54L2 RAD54-like 2 (S. cerevisiae) 2.55334
RETREG1 reticulophagy regulator 1 2.53852
MPHOSPH8 M-phase phosphoprotein 8 2.52959
SLC39A10 solute carrier family 39 (zinc transporter), member 10 2.50827
C19ORF38 chromosome 19 open reading frame 38 2.49417
LGALS1 lectin, galactoside-binding, soluble, 1 2.49417
SLC38A2 solute carrier family 38, member 2 2.48209
CD46 CD46 molecule, complement regulatory protein 2.48209
MEIKIN meiotic kinetochore factor 2.44122
KCTD21 potassium channel tetramerization domain containing 21 2.44122
CENPW centromere protein W 2.42856
MYOF myoferlin 2.40003
RPP25L ribonuclease P/MRP 25kDa subunit-like 2.40003
OSBPL2 oxysterol binding protein-like 2 2.38795
ZNF20 zinc finger protein 20 2.32832
NQO1 NAD(P)H dehydrogenase, quinone 1 2.3166
MARF1 meiosis regulator and mRNA stability factor 1 2.30752
MRFAP1L2 Morf4 family associated protein 1 like 2 2.30752
DNAJC11 DnaJ (Hsp40) homolog, subfamily C, member 11 2.28852
ITPKC inositol-trisphosphate 3-kinase C 2.26371
MAP2K4 mitogen-activated protein kinase kinase 4 2.26203
MT1X metallothionein 1X 2.26083
WNT3 wingless-type MMTV integration site family, member 3 2.26083
NFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 2.255
ZIC5 Zic family member 5 2.25413
MRAP2 melanocortin 2 receptor accessory protein 2 2.25288
TRMT2B tRNA methyltransferase 2 homolog B (S. cerevisiae) 2.24447
PUM2 pumilio RNA-binding family member 2 2.23128
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 2.2277
AVIL advillin 2.21108
MTF1 metal-regulatory transcription factor 1 2.1583
SPATA7 spermatogenesis associated 7 2.15672
RBP1 retinol binding protein 1, cellular 2.15562
UBQLN1 ubiquilin 1 2.15267
OTULINL OTU deubiquitinase with linear linkage specificity like 2.14468
PLEKHM2 pleckstrin homology domain containing, family M (with RUN domain) member 2 2.14364
JAGN1 jagunal homolog 1 (Drosophila) 2.13277
TMEM200B transmembrane protein 200B 2.12817
ZNF469 zinc finger protein 469 2.11417
ULK2 unc-51 like autophagy activating kinase 2 2.10464
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 2.09202
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 2.08942
ZIK1 zinc finger protein interacting with K protein 1 2.07455
BCL2L14 BCL2-like 14 (apoptosis facilitator) 2.07295
APP amyloid beta (A4) precursor protein 2.068
KIF25 kinesin family member 25 2.068
TTC31 tetratricopeptide repeat domain 31 2.06248
INTS3 integrator complex subunit 3 2.06178
RNASEH2C ribonuclease H2, subunit C 2.04299
CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 2.03746
TAF13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa 2.03455
ZFPL1 zinc finger protein-like 1 2.02933
DET1 de-etiolated homolog 1 (Arabidopsis) 2.02617
KIAA0825 KIAA0825 2.01747
TMEM161A transmembrane protein 161A 2.00119

decreased expression

Symbol Name Standardized Value
LZTFL1 leucine zipper transcription factor-like 1 -2.78151
GREM2 gremlin 2, DAN family BMP antagonist -2.7774
TRAPPC2L trafficking protein particle complex 2-like -2.7774
OR4D1 olfactory receptor, family 4, subfamily D, member 1 -2.7774
ZNF774 zinc finger protein 774 -2.7774
RASGEF1C RasGEF domain family, member 1C -2.7774
H4C1 H4 clustered histone 1 -2.7774
RRP7A ribosomal RNA processing 7 homolog A (S. cerevisiae) -2.7774
ZNF658 zinc finger protein 658 -2.7774
ANGPT1 angiopoietin 1 -2.7774
STAB2 stabilin 2 -2.7774
VBP1 von Hippel-Lindau binding protein 1 -2.7774
SOX30 SRY (sex determining region Y)-box 30 -2.69839
ADPRH ADP-ribosylarginine hydrolase -2.69839
ATP5F1D ATP synthase F1 subunit delta -2.69839
LRRC32 leucine rich repeat containing 32 -2.69839
CCDC9B coiled-coil domain containing 9B -2.69839
ABHD1 abhydrolase domain containing 1 -2.69839
CNTFR ciliary neurotrophic factor receptor -2.69839
PRSS21 protease, serine, 21 (testisin) -2.69839
AXDND1 axonemal dynein light chain domain containing 1 -2.69839
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 -2.69839
PLIN4 perilipin 4 -2.69839
ZEB2 zinc finger E-box binding homeobox 2 -2.69839
IL16 interleukin 16 -2.69839
FAM221B family with sequence similarity 221, member B -2.69839
PCP4L1 Purkinje cell protein 4 like 1 -2.69839
GUCY2D guanylate cyclase 2D, membrane (retina-specific) -2.69839
PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like -2.69839
AP1AR adaptor-related protein complex 1 associated regulatory protein -2.69839
SLC2A7 solute carrier family 2 (facilitated glucose transporter), member 7 -2.69839
KCNK2 potassium channel, two pore domain subfamily K, member 2 -2.69839
CHST5 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 -2.69839
PDZRN4 PDZ domain containing ring finger 4 -2.69839
LINC02798 long intergenic non-protein coding RNA 2798 -2.69839
IGSF6 immunoglobulin superfamily, member 6 -2.69839
ACSBG2 acyl-CoA synthetase bubblegum family member 2 -2.69839
VAV1 vav 1 guanine nucleotide exchange factor -2.69839
AKR7A3 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) -2.69839
MYH7B myosin, heavy chain 7B, cardiac muscle, beta -2.69839
NYX nyctalopin -2.69839
PLA2G2C phospholipase A2, group IIC -2.69839
PCDHAC1 protocadherin alpha subfamily C, 1 -2.69839
THBD thrombomodulin -2.69839
WDCP WD repeat and coiled coil containing -2.69839
KLF4 Kruppel-like factor 4 (gut) -2.69839
PLET1 placenta expressed transcript 1 -2.69839
SUPT20HL1 suppressor of Ty 20 homolog (S. cerevisiae)-like 1 -2.69839
RANBP3L RAN binding protein 3-like -2.69839
FAM222A family with sequence similarity 222, member A -2.69839
PARK7 parkinson protein 7 -2.61815
TTC1 tetratricopeptide repeat domain 1 -2.60241
NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit -2.57634
ZFP28 ZFP28 zinc finger protein -2.57307
KCNIP2 Kv channel interacting protein 2 -2.55334
TRIP12 thyroid hormone receptor interactor 12 -2.54762
MRPL14 mitochondrial ribosomal protein L14 -2.54419
C1QTNF7 C1q and tumor necrosis factor related protein 7 -2.53503
PNCK pregnancy up-regulated nonubiquitous CaM kinase -2.52705
COX10 COX10 heme A:farnesyltransferase cytochrome c oxidase assembly factor -2.52393
POLR1D polymerase (RNA) I polypeptide D, 16kDa -2.51618
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -2.49417
RASA4B RAS p21 protein activator 4B -2.49417
GATD3 glutamine amidotransferase class 1 domain containing 3 -2.48209
LACTB2 lactamase, beta 2 -2.48209
DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B -2.47361
SUMO1 small ubiquitin-like modifier 1 -2.47095
LMO4 LIM domain only 4 -2.44486
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha -2.43772
KCTD6 potassium channel tetramerization domain containing 6 -2.41689
EYA4 EYA transcriptional coactivator and phosphatase 4 -2.37189
BST1 bone marrow stromal cell antigen 1 -2.37189
LOC122526780 uncharacterized LOC122526780 -2.37189
AFMID arylformamidase -2.35518
GUF1 GUF1 GTPase homolog (S. cerevisiae) -2.34552
EXOC5 exocyst complex component 5 -2.34389
MRPL1 mitochondrial ribosomal protein L1 -2.33716
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 -2.32797
ACTA2 actin, alpha 2, smooth muscle, aorta -2.32797
ZNF69 zinc finger protein 69 -2.31709
LIN7B lin-7 homolog B (C. elegans) -2.31709
APP-DT APP divergent transcript -2.28314
CUTC cutC copper transporter -2.27193
PSMG3 proteasome (prosome, macropain) assembly chaperone 3 -2.26355
ZNF565 zinc finger protein 565 -2.23845
PRMT6 protein arginine methyltransferase 6 -2.19409
SCN4A sodium channel, voltage gated, type IV alpha subunit -2.18587
SH3PXD2B SH3 and PX domains 2B -2.17862
C16ORF46 chromosome 16 open reading frame 46 -2.15672
CHSY1 chondroitin sulfate synthase 1 -2.1465
SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 -2.14601
DPF1 D4, zinc and double PHD fingers family 1 -2.14601
DDX51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 -2.14471
DOCK1 dedicator of cytokinesis 1 -2.14364
COPG1 coatomer protein complex, subunit gamma 1 -2.13277
SLC2A12 solute carrier family 2 (facilitated glucose transporter), member 12 -2.09818
CCDC136 coiled-coil domain containing 136 -2.09818
ZSCAN2 zinc finger and SCAN domain containing 2 -2.07455
AP4M1 adaptor-related protein complex 4, mu 1 subunit -2.06312
LRRC39 leucine rich repeat containing 39 -2.06248
PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 -2.06248
GABRG1 gamma-aminobutyric acid (GABA) A receptor, gamma 1 -2.06248
ADRA1D adrenoceptor alpha 1D -2.06248
XTBD1 XRN2 binding domain containing 1 -2.03723
ZNF665 zinc finger protein 665 -2.03058
OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) -2.03058
NFIB nuclear factor I/B -2.02933
ECE2 endothelin converting enzyme 2 -2.02765
CDH2 cadherin 2, type 1, N-cadherin (neuronal) -2.01302
RBM22 RNA binding motif protein 22 -2.01302
ACSF2 acyl-CoA synthetase family member 2 -2.01139
MKNK1 MAP kinase interacting serine/threonine kinase 1 -2.00119