LN-229 Gene Set

Dataset Sanger Dependency Map Cancer Cell Line Proteomics
Category proteomics
Type cell line
Description cell line derived from Glioblastoma Tumour (Cell Model Passports, SIDM00684)
External Link https://cellmodelpassports.sanger.ac.uk/passports/SIDM00684
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Genes

198 proteins associated with the cell line LN-229 from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.

Symbol Name
AGAP3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
ALAD aminolevulinate dehydratase
ALB albumin
ALMS1 Alstrom syndrome protein 1
ANKRD30B ankyrin repeat domain 30B
AP1G1 adaptor-related protein complex 1, gamma 1 subunit
AQR aquarius intron-binding spliceosomal factor
ARL2 ADP-ribosylation factor-like 2
ATXN2 ataxin 2
BAK1 BCL2-antagonist/killer 1
BAZ2A bromodomain adjacent to zinc finger domain, 2A
BRD8 bromodomain containing 8
CA2 carbonic anhydrase II
CACUL1 CDK2-associated, cullin domain 1
CCDC71 coiled-coil domain containing 71
CD109 CD109 molecule
CEP131 centrosomal protein 131kDa
CIT citron rho-interacting serine/threonine kinase
CLASP1 cytoplasmic linker associated protein 1
CNTN5 contactin 5
CSNK1D casein kinase 1, delta
DCP1A decapping mRNA 1A
DDB1 damage-specific DNA binding protein 1, 127kDa
DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
DIAPH3 diaphanous-related formin 3
DOCK7 dedicator of cytokinesis 7
DUS2 dihydrouridine synthase 2
ERAP2 endoplasmic reticulum aminopeptidase 2
ERCC5 excision repair cross-complementation group 5
FBXO22 F-box protein 22
FNBP4 formin binding protein 4
GHDC GH3 domain containing
GOLGA1 golgin A1
GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa
HAUS6 HAUS augmin-like complex, subunit 6
HIST1H2APS2 histone cluster 1, H2a, pseudogene 2
HMG20B high mobility group 20B
JMJD6 jumonji domain containing 6
KIDINS220 kinase D-interacting substrate, 220kDa
KIF20A kinesin family member 20A
KIF20B kinesin family member 20B
KRT1 keratin 1, type II
KRT10 keratin 10, type I
KRT2 keratin 2, type II
KRT9 keratin 9, type I
LOC105375357 uncharacterized LOC105375357
MIA2 melanoma inhibitory activity 2
MNAT1 MNAT CDK-activating kinase assembly factor 1
MPDZ multiple PDZ domain protein
MSRB3 methionine sulfoxide reductase B3
MVB12A multivesicular body subunit 12A
NBAS neuroblastoma amplified sequence
NCOA7 nuclear receptor coactivator 7
NDC1 NDC1 transmembrane nucleoporin
NES nestin
NEUROD1 neuronal differentiation 1
NT5DC2 5'-nucleotidase domain containing 2
NUDT16 nudix (nucleoside diphosphate linked moiety X)-type motif 16
OGT O-linked N-acetylglucosamine (GlcNAc) transferase
OTUD7B OTU deubiquitinase 7B
P3H4 prolyl 3-hydroxylase family member 4 (non-enzymatic)
PCDHB4 protocadherin beta 4
PDE4DIP phosphodiesterase 4D interacting protein
PDLIM4 PDZ and LIM domain 4
PER1 period circadian clock 1
PEX1 peroxisomal biogenesis factor 1
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1
PLEKHM1 pleckstrin homology domain containing, family M (with RUN domain) member 1
PLIN2 perilipin 2
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit
PYGB phosphorylase, glycogen; brain
QSER1 glutamine and serine rich 1
RAB11FIP1 RAB11 family interacting protein 1 (class I)
RAB35 RAB35, member RAS oncogene family
RBBP5 retinoblastoma binding protein 5
RNF25 ring finger protein 25
ROCK2 Rho-associated, coiled-coil containing protein kinase 2
RPS24 ribosomal protein S24
RPTOR regulatory associated protein of MTOR, complex 1
SEC23A Sec23 homolog A (S. cerevisiae)
SEC63 SEC63 homolog (S. cerevisiae)
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1
SETX senataxin
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae)
SUN2 Sad1 and UNC84 domain containing 2
SYNM synemin, intermediate filament protein
TRIOBP TRIO and F-actin binding protein
TUBAL3 tubulin, alpha-like 3
UBE3C ubiquitin protein ligase E3C
UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast)
VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae)
WDR74 WD repeat domain 74
XPR1 xenotropic and polytropic retrovirus receptor 1
XTBD1 XRN2 binding domain containing 1
YRDC yrdC N(6)-threonylcarbamoyltransferase domain containing
ZGPAT zinc finger, CCCH-type with G patch domain
ZMYM4 zinc finger, MYM-type 4
ZNF296 zinc finger protein 296
ZNF579 zinc finger protein 579

Symbol Name
AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
ACAA2 acetyl-CoA acyltransferase 2
ACAT1 acetyl-CoA acetyltransferase 1
ACOT13 acyl-CoA thioesterase 13
AGR2 anterior gradient 2
AKAP8L A kinase (PRKA) anchor protein 8-like
ARL1 ADP-ribosylation factor-like 1
ASXL2 additional sex combs like transcriptional regulator 2
B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
CASKIN2 CASK interacting protein 2
CBLL1 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta
CLIP2 CAP-GLY domain containing linker protein 2
COX5B cytochrome c oxidase subunit Vb
CXORF38 chromosome X open reading frame 38
DCTD dCMP deaminase
DERL2 derlin 2
DLAT dihydrolipoamide S-acetyltransferase
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1
DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1
ENY2 enhancer of yellow 2 homolog (Drosophila)
ERH enhancer of rudimentary homolog (Drosophila)
FAM136A family with sequence similarity 136, member A
GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1
GCDH glutaryl-CoA dehydrogenase
GINS2 GINS complex subunit 2 (Psf2 homolog)
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3
HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H')
ICMT isoprenylcysteine carboxyl methyltransferase
INTS4 integrator complex subunit 4
ISCU iron-sulfur cluster assembly enzyme
KDM4A lysine (K)-specific demethylase 4A
KIAA0100 KIAA0100
KIF1BP KIF1 binding protein
KPNA1 karyopherin alpha 1 (importin alpha 5)
KRT85 keratin 85, type II
LETM1 leucine zipper-EF-hand containing transmembrane protein 1
LOC101929615 uncharacterized LOC101929615
LOC646626 uncharacterized LOC646626
LRRC57 leucine rich repeat containing 57
MARS2 methionyl-tRNA synthetase 2, mitochondrial
MED30 mediator complex subunit 30
METTL3 methyltransferase like 3
MRFAP1 Morf4 family associated protein 1
MROH2B maestro heat-like repeat family member 2B
MSI2 musashi RNA-binding protein 2
MTPAP mitochondrial poly(A) polymerase
MYLK myosin light chain kinase
NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
NFYB nuclear transcription factor Y, beta
NOL11 nucleolar protein 11
NOL7 nucleolar protein 7, 27kDa
NUCLEOLIN nucleolin multifunctional protein
NUP62 nucleoporin 62kDa
NUP85 nucleoporin 85kDa
NYX nyctalopin
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
PDHB pyruvate dehydrogenase (lipoamide) beta
PIEZO1 piezo-type mechanosensitive ion channel component 1
PLXND1 plexin D1
POLG polymerase (DNA directed), gamma
PPIG peptidylprolyl isomerase G (cyclophilin G)
PPP1CB protein phosphatase 1, catalytic subunit, beta isozyme
PPP6R3 protein phosphatase 6, regulatory subunit 3
PRIM1 primase, DNA, polypeptide 1 (49kDa)
PRPF4B pre-mRNA processing factor 4B
PTBP2 polypyrimidine tract binding protein 2
PTCD3 pentatricopeptide repeat domain 3
PUS1 pseudouridylate synthase 1
RANBP9 RAN binding protein 9
RASA1 RAS p21 protein activator (GTPase activating protein) 1
REXO2 RNA exonuclease 2
RNPS1 RNA binding protein S1, serine-rich domain
RPL32 ribosomal protein L32
RXRB retinoid X receptor, beta
SCEL sciellin
SEPHS1 selenophosphate synthetase 1
SHTN1 shootin 1
SMNDC1 survival motor neuron domain containing 1
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOAT1 sterol O-acyltransferase 1
SRSF5 serine/arginine-rich splicing factor 5
STX7 syntaxin 7
STX8 syntaxin 8
SYT11 synaptotagmin XI
TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1
TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast)
TIMM44 translocase of inner mitochondrial membrane 44 homolog (yeast)
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b
U2AF2 U2 small nuclear RNA auxiliary factor 2
UQCC1 ubiquinol-cytochrome c reductase complex assembly factor 1
UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast)
VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
VDAC2 voltage-dependent anion channel 2
WDR46 WD repeat domain 46
ZC3H13 zinc finger CCCH-type containing 13
ZNF687 zinc finger protein 687
ZNHIT2 zinc finger, HIT-type containing 2
ZZZ3 zinc finger, ZZ-type containing 3