LNCaP-Clone-FGC Gene Set

Dataset GDSC Cell Line Gene Expression Profiles
Category transcriptomics
Type cell line
Description disease: carcinoma (prostate primary) (Cell Line Ontology, CLO_0007366)
Similar Terms
Downloads & Tools

Genes

361 genes with high or low expression in LNCaP-Clone-FGC relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
KLK3 kallikrein-related peptidase 3 3.60177
FOLH1B folate hydrolase 1B 3.60177
KDM6A lysine (K)-specific demethylase 6A 3.60177
RLN1 relaxin 1 3.60177
FOLH1 folate hydrolase (prostate-specific membrane antigen) 1 3.60177
KLK2 kallikrein-related peptidase 2 3.60177
LUZP2 leucine zipper protein 2 3.59595
NKX3-1 NK3 homeobox 1 3.56403
PRKD1 protein kinase D1 3.41986
SORD sorbitol dehydrogenase 3.37008
AMD1 adenosylmethionine decarboxylase 1 3.35609
KCNN2 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 2 3.25694
CPNE3 copine III 3.13931
SLC30A4 solute carrier family 30 (zinc transporter), member 4 3.13369
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 2.99979
ALOX15 arachidonate 15-lipoxygenase 2.89777
ECH1 enoyl CoA hydratase 1, peroxisomal 2.74546
TMPRSS2 transmembrane protease, serine 2 2.74399
AR androgen receptor 2.74331
PPAP2A phosphatidic acid phosphatase type 2A 2.73029
SLC22A3 solute carrier family 22 (organic cation transporter), member 3 2.7066
GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 2.69608
ABHD2 abhydrolase domain containing 2 2.66562
RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2.64628
NCAM2 neural cell adhesion molecule 2 2.61573
MPI mannose phosphate isomerase 2.59073
ADAM2 ADAM metallopeptidase domain 2 2.56596
PRKACB protein kinase, cAMP-dependent, catalytic, beta 2.56465
FECH ferrochelatase 2.54279
NUP93 nucleoporin 93kDa 2.53917
NAAA N-acylethanolamine acid amidase 2.52315
MCCC2 methylcrotonoyl-CoA carboxylase 2 (beta) 2.48345
MYO6 myosin VI 2.47365
CENPN centromere protein N 2.4651
HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3 2.4306
HPR haptoglobin-related protein 2.41482
HPN hepsin 2.40979
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 2.39451
CCNG2 cyclin G2 2.39074
PEX10 peroxisomal biogenesis factor 10 2.385
MANEA mannosidase, endo-alpha 2.36965
EXOSC7 exosome component 7 2.35424
TRIM68 tripartite motif containing 68 2.33318
SPON2 spondin 2, extracellular matrix protein 2.26917
ALDH6A1 aldehyde dehydrogenase 6 family, member A1 2.26747
RNF41 ring finger protein 41, E3 ubiquitin protein ligase 2.2607
ST7 suppression of tumorigenicity 7 2.22799
HOXB13 homeobox B13 2.22621
GNMT glycine N-methyltransferase 2.20285
DEGS1 delta(4)-desaturase, sphingolipid 1 2.16392
ZBTB16 zinc finger and BTB domain containing 16 2.16136
SLC25A10 solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 2.14398
HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 2.13918
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 2.13063
ACY1 aminoacylase 1 2.12387
RLN2 relaxin 2 2.10304
OXSM 3-oxoacyl-ACP synthase, mitochondrial 2.10209
TSC2 tuberous sclerosis 2 2.05215
CKB creatine kinase, brain 2.04677
MAOA monoamine oxidase A 2.03509
MPC2 mitochondrial pyruvate carrier 2 2.02896
GMPPB GDP-mannose pyrophosphorylase B 2.00167
IVD isovaleryl-CoA dehydrogenase 1.99881
DCXR dicarbonyl/L-xylulose reductase 1.99858
ADAM7 ADAM metallopeptidase domain 7 1.98584
CDK19 cyclin-dependent kinase 19 1.98419
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 1.96718
IP6K2 inositol hexakisphosphate kinase 2 1.9668
CHPT1 choline phosphotransferase 1 1.96113
ROGDI rogdi homolog (Drosophila) 1.95478
FAAH fatty acid amide hydrolase 1.9525
OAZ3 ornithine decarboxylase antizyme 3 1.94573
DCAF6 DDB1 and CUL4 associated factor 6 1.9334
SENP6 SUMO1/sentrin specific peptidase 6 1.93277
STXBP5L syntaxin binding protein 5-like 1.92903
EDA ectodysplasin A 1.91719
ERI2 ERI1 exoribonuclease family member 2 1.91206
MAPK6 mitogen-activated protein kinase 6 1.91023
NVL nuclear VCP-like 1.90904
MARC1 mitochondrial amidoxime reducing component 1 1.90378
DNASE2B deoxyribonuclease II beta 1.90232
UGT2B15 UDP glucuronosyltransferase 2 family, polypeptide B15 1.89617
DIO1 deiodinase, iodothyronine, type I 1.89516
RNF10 ring finger protein 10 1.8846
NDUFA4L2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 1.8834
VWF von Willebrand factor 1.87569
LPAR3 lysophosphatidic acid receptor 3 1.87198
ARHGAP6 Rho GTPase activating protein 6 1.87193
TKFC triokinase/FMN cyclase 1.86713
STEAP1 six transmembrane epithelial antigen of the prostate 1 1.86535
ACPP acid phosphatase, prostate 1.86528
SRSF9 serine/arginine-rich splicing factor 9 1.86291
THRAP3 thyroid hormone receptor associated protein 3 1.85948
FOXA1 forkhead box A1 1.85526
HSPA1L heat shock 70kDa protein 1-like 1.84613
PRUNE2 prune homolog 2 (Drosophila) 1.83181
CTPS2 CTP synthase 2 1.82865
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 1.81136
TBL1Y transducin (beta)-like 1, Y-linked 1.80869
RWDD2A RWD domain containing 2A 1.80493
CERS4 ceramide synthase 4 1.80149
PGC progastricsin (pepsinogen C) 1.78184
SCAMP4 secretory carrier membrane protein 4 1.77207
RAB26 RAB26, member RAS oncogene family 1.77137
NUDT2 nudix (nucleoside diphosphate linked moiety X)-type motif 2 1.76997
MB myoglobin 1.76911
C1QTNF9B-AS1 C1QTNF9B antisense RNA 1 1.76885
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 1.76652
USP9Y ubiquitin specific peptidase 9, Y-linked 1.76645
HOMER2 homer scaffolding protein 2 1.76364
HYPK huntingtin interacting protein K 1.76164
PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 1.75917
POLD2 polymerase (DNA directed), delta 2, accessory subunit 1.75814
ENDOG endonuclease G 1.73796
RPL10L ribosomal protein L10-like 1.7348
EFNA5 ephrin-A5 1.73294
TM7SF2 transmembrane 7 superfamily member 2 1.72905
SLITRK3 SLIT and NTRK-like family, member 3 1.72865
APEH acylaminoacyl-peptide hydrolase 1.72455
TMEM134 transmembrane protein 134 1.71828
SIL1 SIL1 nucleotide exchange factor 1.70819
ACADVL acyl-CoA dehydrogenase, very long chain 1.70439
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 1.7029
NDUFA7 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa 1.70156
MYOD1 myogenic differentiation 1 1.69163
EHF ets homologous factor 1.68928
NLRX1 NLR family member X1 1.68625
STX17 syntaxin 17 1.68374
PHKB phosphorylase kinase, beta 1.67932
GFOD2 glucose-fructose oxidoreductase domain containing 2 1.67179
PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 1.66415
TTTY15 testis-specific transcript, Y-linked 15 (non-protein coding) 1.65873
TRPM4 transient receptor potential cation channel, subfamily M, member 4 1.65539
CYB5A cytochrome b5 type A (microsomal) 1.652
ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 1.64743
HNRNPL heterogeneous nuclear ribonucleoprotein L 1.64676
IPW imprinted in Prader-Willi syndrome (non-protein coding) 1.64624
GULP1 GULP, engulfment adaptor PTB domain containing 1 1.64588
PEG3 paternally expressed 3 1.64342
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 1.6407
FAM155B family with sequence similarity 155, member B 1.63673
SUOX sulfite oxidase 1.63654
ADAM18 ADAM metallopeptidase domain 18 1.63512
GNG13 guanine nucleotide binding protein (G protein), gamma 13 1.62665
MED18 mediator complex subunit 18 1.62572
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 1.62472
STAP2 signal transducing adaptor family member 2 1.62365
SETMAR SET domain and mariner transposase fusion gene 1.62273
DSC2 desmocollin 2 1.62269
TRMU tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 1.61673
ARHGAP28 Rho GTPase activating protein 28 1.61671
TEX264 testis expressed 264 1.61669
TBX3 T-box 3 1.61454
GTF2A1 general transcription factor IIA, 1, 19/37kDa 1.61011
HIST2H2BE histone cluster 2, H2be 1.60757
ECHS1 enoyl CoA hydratase, short chain, 1, mitochondrial 1.60688
SCAMP1 secretory carrier membrane protein 1 1.6034
PRR7 proline rich 7 (synaptic) 1.60229
SLC25A11 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 1.60202
TTLL1 tubulin tyrosine ligase-like family member 1 1.59806
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 1.59605
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 1.59321
ACACA acetyl-CoA carboxylase alpha 1.58856
UGT2B17 UDP glucuronosyltransferase 2 family, polypeptide B17 1.58606
MIPEP mitochondrial intermediate peptidase 1.5656
GAMT guanidinoacetate N-methyltransferase 1.56108
VPS37C vacuolar protein sorting 37 homolog C (S. cerevisiae) 1.56106
ADCK2 aarF domain containing kinase 2 1.55836
HIST1H3H histone cluster 1, H3h 1.54201
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 1.54093
GUCY1A3 guanylate cyclase 1, soluble, alpha 3 1.53624
ZNF419 zinc finger protein 419 1.53515
HOOK2 hook microtubule-tethering protein 2 1.53416
BCKDK branched chain ketoacid dehydrogenase kinase 1.53388
ARG2 arginase 2 1.53181
REPS2 RALBP1 associated Eps domain containing 2 1.53141
NPRL2 nitrogen permease regulator-like 2 (S. cerevisiae) 1.52316
WSB2 WD repeat and SOCS box containing 2 1.52299
MRPL40 mitochondrial ribosomal protein L40 1.52036
DENND1A DENN/MADD domain containing 1A 1.51995
XPO6 exportin 6 1.51966
FRMPD1 FERM and PDZ domain containing 1 1.51849
HSD17B8 hydroxysteroid (17-beta) dehydrogenase 8 1.51391
TREX1 three prime repair exonuclease 1 1.50634
GPI glucose-6-phosphate isomerase 1.50489
EPHX2 epoxide hydrolase 2, cytoplasmic 1.50202
THTPA thiamine triphosphatase 1.49801
ENDOD1 endonuclease domain containing 1 1.49476
TXNRD2 thioredoxin reductase 2 1.49213
GDF15 growth differentiation factor 15 1.49031
FAN1 FANCD2/FANCI-associated nuclease 1 1.48884
ZNF32 zinc finger protein 32 1.48511
WDR7 WD repeat domain 7 1.48429
ADRB2 adrenoceptor beta 2, surface 1.48394
MMP16 matrix metallopeptidase 16 (membrane-inserted) 1.47088
PPP1R10 protein phosphatase 1, regulatory subunit 10 1.47023
PYCRL pyrroline-5-carboxylate reductase-like 1.46967
TRIM48 tripartite motif containing 48 1.46865
MLST8 MTOR associated protein, LST8 homolog (S. cerevisiae) 1.46412
PITPNA phosphatidylinositol transfer protein, alpha 1.46334
EVX1 even-skipped homeobox 1 1.46279
PCCB propionyl CoA carboxylase, beta polypeptide 1.45632
ZNF143 zinc finger protein 143 1.45614
GSTZ1 glutathione S-transferase zeta 1 1.45466
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 1.45466
TGM3 transglutaminase 3 1.4499
EFNA3 ephrin-A3 1.44859
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 1.44831
BBS4 Bardet-Biedl syndrome 4 1.43865
CAB39L calcium binding protein 39-like 1.43722
RUVBL1 RuvB-like AAA ATPase 1 1.43671
SLC44A4 solute carrier family 44, member 4 1.43287
ANGPT2 angiopoietin 2 1.4308
LRRC20 leucine rich repeat containing 20 1.43033
AP2A2 adaptor-related protein complex 2, alpha 2 subunit 1.42972
BARD1 BRCA1 associated RING domain 1 1.42765
ATP6V0E2 ATPase, H+ transporting V0 subunit e2 1.42558
FASN fatty acid synthase 1.42306

low expression

Symbol Name Standardized Value
CLPTM1 cleft lip and palate associated transmembrane protein 1 -3.53725
MSH2 mutS homolog 2 -3.03505
CTSS cathepsin S -2.95121
FBRS fibrosin -2.91363
SPTBN1 spectrin, beta, non-erythrocytic 1 -2.79593
AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 -2.73836
MMRN2 multimerin 2 -2.60086
PHTF1 putative homeodomain transcription factor 1 -2.59253
SERTAD2 SERTA domain containing 2 -2.5426
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha -2.53156
ANXA2 annexin A2 -2.50576
FASLG Fas ligand (TNF superfamily, member 6) -2.49844
MOB1A MOB kinase activator 1A -2.46922
SLC35D1 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 -2.43133
ERN2 endoplasmic reticulum to nucleus signaling 2 -2.35731
ZNF22 zinc finger protein 22 -2.27623
ARSJ arylsulfatase family, member J -2.22621
MOB3B MOB kinase activator 3B -2.20747
ATP10D ATPase, class V, type 10D -2.1986
CTSC cathepsin C -2.16086
NMT1 N-myristoyltransferase 1 -2.15908
ZBTB33 zinc finger and BTB domain containing 33 -2.14156
PLD1 phospholipase D1, phosphatidylcholine-specific -2.1123
CHST8 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 -2.10669
TIAM1 T-cell lymphoma invasion and metastasis 1 -2.08489
MAP3K7 mitogen-activated protein kinase kinase kinase 7 -2.08408
DPYD dihydropyrimidine dehydrogenase -2.08197
FBP2 fructose-1,6-bisphosphatase 2 -2.03094
FABP7 fatty acid binding protein 7, brain -2.01904
EML4 echinoderm microtubule associated protein like 4 -2.01793
FGF23 fibroblast growth factor 23 -2.01323
JAK1 Janus kinase 1 -2.00071
FLI1 Fli-1 proto-oncogene, ETS transcription factor -1.98908
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -1.96999
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) -1.95586
SMYD2 SET and MYND domain containing 2 -1.93822
RPA4 replication protein A4, 30kDa -1.9277
TLE4 transducin-like enhancer of split 4 -1.91983
EPHA5 EPH receptor A5 -1.89366
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) -1.88395
PROL1 proline rich, lacrimal 1 -1.87967
GATA3 GATA binding protein 3 -1.87185
CCDC102B coiled-coil domain containing 102B -1.85713
MED14 mediator complex subunit 14 -1.84887
KRTAP4-7 keratin associated protein 4-7 -1.8374
NTS neurotensin -1.83411
CERK ceramide kinase -1.83379
GPATCH8 G patch domain containing 8 -1.82111
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 -1.80432
ZNF516 zinc finger protein 516 -1.79318
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 -1.79048
HEY2 hes-related family bHLH transcription factor with YRPW motif 2 -1.78651
ANXA2P2 annexin A2 pseudogene 2 -1.78094
SCHIP1 schwannomin interacting protein 1 -1.78011
OSBPL9 oxysterol binding protein-like 9 -1.762
BGN biglycan -1.75354
ZCCHC4 zinc finger, CCHC domain containing 4 -1.74777
BNC2 basonuclin 2 -1.74229
PLXND1 plexin D1 -1.74025
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) -1.73835
WAPAL wings apart-like homolog (Drosophila) -1.73503
DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) -1.72202
HTR3A 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic -1.70422
TMSB10 thymosin beta 10 -1.70307
GRIP2 glutamate receptor interacting protein 2 -1.69762
EGFL6 EGF-like-domain, multiple 6 -1.69703
FCAR Fc fragment of IgA receptor -1.69265
FAM46A family with sequence similarity 46, member A -1.69107
MVP major vault protein -1.68908
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) -1.67976
HDAC9 histone deacetylase 9 -1.67875
SSPN sarcospan -1.67862
PAX8 paired box 8 -1.67253
PLEKHA2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 -1.66789
TGFB3 transforming growth factor, beta 3 -1.66597
ANXA1 annexin A1 -1.66237
IFNA14 interferon, alpha 14 -1.66055
TDO2 tryptophan 2,3-dioxygenase -1.65099
GSTP1 glutathione S-transferase pi 1 -1.64852
PRR4 proline rich 4 (lacrimal) -1.64477
SLCO1B3 solute carrier organic anion transporter family, member 1B3 -1.6442
RGS20 regulator of G-protein signaling 20 -1.64254
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) -1.63603
LUZP1 leucine zipper protein 1 -1.63013
ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 -1.62311
HIC2 hypermethylated in cancer 2 -1.62225
TMEM50A transmembrane protein 50A -1.61563
BAG4 BCL2-associated athanogene 4 -1.61414
EXOC2 exocyst complex component 2 -1.60594
NOC3L nucleolar complex associated 3 homolog (S. cerevisiae) -1.60282
UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 -1.57548
SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin) -1.5746
NPHS1 nephrosis 1, congenital, Finnish type (nephrin) -1.57407
CDKL3 cyclin-dependent kinase-like 3 -1.56425
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -1.55547
CTGF connective tissue growth factor -1.55477
PTPRS protein tyrosine phosphatase, receptor type, S -1.54891
DIS3 DIS3 exosome endoribonuclease and 3'-5' exoribonuclease -1.5462
TIPARP TCDD-inducible poly(ADP-ribose) polymerase -1.53836
TPK1 thiamin pyrophosphokinase 1 -1.53594
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -1.52044
EMP1 epithelial membrane protein 1 -1.52043
CARD9 caspase recruitment domain family, member 9 -1.51899
IQGAP1 IQ motif containing GTPase activating protein 1 -1.51659
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 -1.5155
SYF2 SYF2 pre-mRNA-splicing factor -1.51469
ETV4 ets variant 4 -1.51459
DPY19L1 dpy-19-like 1 (C. elegans) -1.5065
ITGB1BP1 integrin beta 1 binding protein 1 -1.50631
DYSF dysferlin -1.50564
RRAD Ras-related associated with diabetes -1.50137
THAP9 THAP domain containing 9 -1.50056
BTN2A3P butyrophilin, subfamily 2, member A3, pseudogene -1.49736
EHD1 EH-domain containing 1 -1.497
ADGRA2 adhesion G protein-coupled receptor A2 -1.4942
PARP6 poly (ADP-ribose) polymerase family, member 6 -1.48846
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 -1.48596
TMLHE trimethyllysine hydroxylase, epsilon -1.47962
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B -1.47806
NR0B2 nuclear receptor subfamily 0, group B, member 2 -1.47768
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 -1.47656
GRM8 glutamate receptor, metabotropic 8 -1.47383
SLA Src-like-adaptor -1.47361
FABP3 fatty acid binding protein 3, muscle and heart -1.46535
NNT nicotinamide nucleotide transhydrogenase -1.46445
CCNJL cyclin J-like -1.46214
PAM peptidylglycine alpha-amidating monooxygenase -1.46202
MAPRE1 microtubule-associated protein, RP/EB family, member 1 -1.46037
DPP6 dipeptidyl-peptidase 6 -1.4581
MID1 midline 1 -1.45712
AP3B1 adaptor-related protein complex 3, beta 1 subunit -1.45638
TENM2 teneurin transmembrane protein 2 -1.45357
FCHSD2 FCH and double SH3 domains 2 -1.45099
LTN1 listerin E3 ubiquitin protein ligase 1 -1.44808
ACSL4 acyl-CoA synthetase long-chain family member 4 -1.4461
SOS1 son of sevenless homolog 1 (Drosophila) -1.43914
FLG filaggrin -1.43909
NME4 NME/NM23 nucleoside diphosphate kinase 4 -1.43875
KLF6 Kruppel-like factor 6 -1.43454
FST follistatin -1.42854
IRF9 interferon regulatory factor 9 -1.42674
CDK17 cyclin-dependent kinase 17 -1.42629
CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta -1.41661