LS411N Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: colorectal carcinoma (Cell Line Ontology, CLO_0007406)
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Genes

92 genes with high or low copy number in LS411N relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ABI1 abl-interactor 1 2.60021
GOLGA6L9 golgin A6 family-like 9 1.99756
RPS17 ribosomal protein S17 1.9969
UBE2Q2P2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 1.94266
FGFR1 fibroblast growth factor receptor 1 1.81581
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 1.70007
LINC00202-1 long intergenic non-protein coding RNA 202-1 1.69468
SPRNP1 shadow of prion protein homolog (zebrafish) pseudogene 1 1.51652
CCL3L1 chemokine (C-C motif) ligand 3-like 1 1.51642
CCL3L3 chemokine (C-C motif) ligand 3-like 3 1.51642
CCL4L2 chemokine (C-C motif) ligand 4-like 2 1.516
CCL4L1 chemokine (C-C motif) ligand 4-like 1 1.516
SYCE1 synaptonemal complex central element protein 1 1.51166
SCART1 scavenger receptor protein family member 1.50726
CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 1.5009
MSI2 musashi RNA-binding protein 2 1.48673
TMPRSS2 transmembrane protease, serine 2 1.37098
TRIO trio Rho guanine nucleotide exchange factor 1.35741
SPATA5 spermatogenesis associated 5 1.35512

low copy number

Symbol Name Standardized Value
ZNF652 zinc finger protein 652 -3.21049
AGBL4 ATP/GTP binding protein-like 4 -3.21049
NIFK-AS1 NIFK antisense RNA 1 -3.21049
DGKE diacylglycerol kinase, epsilon 64kDa -3.21049
FBXL2 F-box and leucine-rich repeat protein 2 -3.02657
CAMKMT calmodulin-lysine N-methyltransferase -2.79442
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -2.7536
GGT8P gamma-glutamyltransferase 8 pseudogene -2.61249
CLECL1 C-type lectin-like 1 -2.59447
EIF1B-AS1 EIF1B antisense RNA 1 -2.58798
SAMD5 sterile alpha motif domain containing 5 -2.3719
C9 complement component 9 -2.36687
SLIT2 slit homolog 2 (Drosophila) -2.34647
INPP5D inositol polyphosphate-5-phosphatase, 145kDa -2.30721
LOC654342 lymphocyte-specific protein 1 pseudogene -2.29144
GALC galactosylceramidase -2.25538
SNED1 sushi, nidogen and EGF-like domains 1 -2.13594
MYRIP myosin VIIA and Rab interacting protein -2.10633
MYO5A myosin VA (heavy chain 12, myoxin) -2.09996
INTS3 integrator complex subunit 3 -2.09857
DPYD dihydropyrimidine dehydrogenase -2.09402
MAST4 microtubule associated serine/threonine kinase family member 4 -2.0926
CDH18 cadherin 18, type 2 -2.07483
LINC00486 long intergenic non-protein coding RNA 486 -2.00401
TMEM11 transmembrane protein 11 -2.00389
CASC2 cancer susceptibility candidate 2 (non-protein coding) -1.98379
NRXN1 neurexin 1 -1.92896
MYH2 myosin, heavy chain 2, skeletal muscle, adult -1.87347
PTPRK protein tyrosine phosphatase, receptor type, K -1.81529
LINC00669 long intergenic non-protein coding RNA 669 -1.81054
RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) -1.75764
GTDC1 glycosyltransferase-like domain containing 1 -1.73521
OSR2 odd-skipped related transciption factor 2 -1.69815
MREG melanoregulin -1.67665
MSTO1 misato 1, mitochondrial distribution and morphology regulator -1.6665
YY1AP1 YY1 associated protein 1 -1.66637
NRXN3 neurexin 3 -1.64239
TRDN triadin -1.6341
MIR651 microRNA 651 -1.61123
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial -1.6085
LUZP2 leucine zipper protein 2 -1.60615
TMEM108 transmembrane protein 108 -1.56735
ACTN2 actinin, alpha 2 -1.54908
VCX2 variable charge, X-linked 2 -1.52268
DEFB131 defensin, beta 131 -1.50334
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -1.47606
STK3 serine/threonine kinase 3 -1.47285
ZNF826P zinc finger protein 826, pseudogene -1.42165
ASTN2 astrotactin 2 -1.40772
IL4R interleukin 4 receptor -1.38206
HLA-G major histocompatibility complex, class I, G -1.38064
VCX variable charge, X-linked -1.36614
DONSON downstream neighbor of SON -1.36512
SON SON DNA binding protein -1.36448
CRYZL1 crystallin, zeta (quinone reductase)-like 1 -1.34627
GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase -1.34458
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit -1.34174
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -1.34166
MRPS6 mitochondrial ribosomal protein S6 -1.34055
IL10RB-AS1 IL10RB antisense RNA 1 (head to head) -1.33045
IL10RB interleukin 10 receptor, beta -1.3298
DNAJC28 DnaJ (Hsp40) homolog, subfamily C, member 28 -1.32732
LINC00310 long intergenic non-protein coding RNA 310 -1.32701
C7ORF34 chromosome 7 open reading frame 34 -1.32582
KEL Kell blood group, metallo-endopeptidase -1.32582
TRPV5 transient receptor potential cation channel, subfamily V, member 5 -1.32582
EPHB6 EPH receptor B6 -1.32572
TAS2R40 taste receptor, type 2, member 40 -1.3246
LINC00649 long intergenic non-protein coding RNA 649 -1.32448
MSTO2P misato family member 2, pseudogene -1.32166
IFNAR2 interferon (alpha, beta and omega) receptor 2 -1.32114
SMIM11 small integral membrane protein 11 -1.32098
KCNE2 potassium channel, voltage gated subfamily E regulatory beta subunit 2 -1.32098