LS411N Gene Set

Dataset CCLE Cell Line Gene Expression Profiles
Category transcriptomics
Type cell line
Description disease: colorectal carcinoma (Cell Line Ontology, CLO_0007406)
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Genes

354 genes with high or low expression in LS411N relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
RASL11A RAS-like, family 11, member A 2.99346
ZNF33B zinc finger protein 33B 2.76332
SMOC2 SPARC related modular calcium binding 2 2.64876
PGGT1B protein geranylgeranyltransferase type I, beta subunit 2.54882
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 2.53033
TMEM144 transmembrane protein 144 2.52832
LYZ lysozyme 2.38354
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 2.3798
CD46 CD46 molecule, complement regulatory protein 2.33206
GLS2 glutaminase 2 (liver, mitochondrial) 2.26551
FAM201A family with sequence similarity 201, member A 2.14642
TMED6 transmembrane emp24 protein transport domain containing 6 2.13111
ATE1 arginyltransferase 1 2.10995
MCM9 minichromosome maintenance complex component 9 2.09943
ECT2 epithelial cell transforming 2 2.09668
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 2.04756
CCDC186 coiled-coil domain containing 186 2.02283
MORC4 MORC family CW-type zinc finger 4 2.00912
TUBE1 tubulin, epsilon 1 1.98228
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 1.96912
EPHB3 EPH receptor B3 1.9575
FBXO4 F-box protein 4 1.95632
PGM5 phosphoglucomutase 5 1.94665
TESC tescalcin 1.94103
NMNAT3 nicotinamide nucleotide adenylyltransferase 3 1.92301
HOXC5 homeobox C5 1.9224
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 1.9197
STOX1 storkhead box 1 1.91913
RIPPLY1 ripply transcriptional repressor 1 1.91739
PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha 1.91428
C2ORF70 chromosome 2 open reading frame 70 1.90149
HIST1H1B histone cluster 1, H1b 1.90126
SYCE3 synaptonemal complex central element protein 3 1.89945
CDC40 cell division cycle 40 1.89159
THNSL1 threonine synthase-like 1 (S. cerevisiae) 1.88987
FABP6 fatty acid binding protein 6, ileal 1.87585
HDAC1 histone deacetylase 1 1.87199
TXNRD3 thioredoxin reductase 3 1.86981
SOWAHA sosondowah ankyrin repeat domain family member A 1.8656
EHF ets homologous factor 1.85333
C19ORF45 chromosome 19 open reading frame 45 1.85175
ACBD5 acyl-CoA binding domain containing 5 1.84718
OLFM4 olfactomedin 4 1.83057
TST thiosulfate sulfurtransferase (rhodanese) 1.80251
RASSF3 Ras association (RalGDS/AF-6) domain family member 3 1.80084
LOC100506125 uncharacterized LOC100506125 1.78879
TTC19 tetratricopeptide repeat domain 19 1.78564
NHLRC2 NHL repeat containing 2 1.7831
KREMEN1 kringle containing transmembrane protein 1 1.77131
SLC28A3 solute carrier family 28 (concentrative nucleoside transporter), member 3 1.76485
EIF2A eukaryotic translation initiation factor 2A, 65kDa 1.76248
RNF128 ring finger protein 128, E3 ubiquitin protein ligase 1.75984
ZNF277 zinc finger protein 277 1.7577
SETD9 SET domain containing 9 1.75279
SLC5A1 solute carrier family 5 (sodium/glucose cotransporter), member 1 1.74339
GIPC2 GIPC PDZ domain containing family, member 2 1.73751
ZIC5 Zic family member 5 1.73415
NEK4 NIMA-related kinase 4 1.73346
BCL2L14 BCL2-like 14 (apoptosis facilitator) 1.72874
ESCO1 establishment of sister chromatid cohesion N-acetyltransferase 1 1.72329
PAPOLA poly(A) polymerase alpha 1.71781
LRRC58 leucine rich repeat containing 58 1.71614
NT5DC1 5'-nucleotidase domain containing 1 1.71141
CABP1 calcium binding protein 1 1.70106
LARP4 La ribonucleoprotein domain family, member 4 1.69669
KIAA2018 KIAA2018 1.69254
COLGALT2 collagen beta(1-O)galactosyltransferase 2 1.68531
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 1.68263
YBX2 Y box binding protein 2 1.67245
PEX7 peroxisomal biogenesis factor 7 1.66898
NHEJ1 nonhomologous end-joining factor 1 1.66885
PPA2 pyrophosphatase (inorganic) 2 1.66209
TSC22D1 TSC22 domain family, member 1 1.66018
ZMYM5 zinc finger, MYM-type 5 1.65449
SUGT1P3 SUGT1 pseudogene 3 1.65217
NSMCE4A non-SMC element 4 homolog A (S. cerevisiae) 1.65186
ARID5B AT rich interactive domain 5B (MRF1-like) 1.65056
PPA1 pyrophosphatase (inorganic) 1 1.64588
PRELID2 PRELI domain containing 2 1.63681
NAA16 N(alpha)-acetyltransferase 16, NatA auxiliary subunit 1.63537
MT1G metallothionein 1G 1.63408
CASC2 cancer susceptibility candidate 2 (non-protein coding) 1.63317
SRD5A1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 1.6309
PSMG2 proteasome (prosome, macropain) assembly chaperone 2 1.62915
TTC12 tetratricopeptide repeat domain 12 1.62328
PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 1.61716
TRUB1 TruB pseudouridine (psi) synthase family member 1 1.6158
TMEM170A transmembrane protein 170A 1.61132
C2ORF82 chromosome 2 open reading frame 82 1.61028
CYMP chymosin pseudogene 1.61017
MYH4 myosin, heavy chain 4, skeletal muscle 1.60882
CCSER2 coiled-coil serine-rich protein 2 1.59888
PP7080 uncharacterized LOC25845 1.5959
HNF4G hepatocyte nuclear factor 4, gamma 1.59346
MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 1.59255
METTL12 methyltransferase like 12 1.5924
HELLS helicase, lymphoid-specific 1.58882
FGF4 fibroblast growth factor 4 1.5877
SAT1 spermidine/spermine N1-acetyltransferase 1 1.58715
PRDX3 peroxiredoxin 3 1.58479
RAD54B RAD54 homolog B (S. cerevisiae) 1.58127
FAIM2 Fas apoptotic inhibitory molecule 2 1.57286
NEK3 NIMA-related kinase 3 1.5713
ZNRF3 zinc and ring finger 3 1.56819
IL20RA interleukin 20 receptor, alpha 1.56596
RAD51D RAD51 paralog D 1.55455
MAPK8 mitogen-activated protein kinase 8 1.55327
ST7-AS1 ST7 antisense RNA 1 1.55122
GP2 glycoprotein 2 (zymogen granule membrane) 1.55058
ZDHHC20 zinc finger, DHHC-type containing 20 1.54931
GK5 glycerol kinase 5 (putative) 1.54903
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 1.54619
LGR5 leucine-rich repeat containing G protein-coupled receptor 5 1.54388
RNF6 ring finger protein (C3H2C3 type) 6 1.54198
ASCL2 achaete-scute family bHLH transcription factor 2 1.54035
C17ORF97 chromosome 17 open reading frame 97 1.53432
MRPL42 mitochondrial ribosomal protein L42 1.53422
HINT3 histidine triad nucleotide binding protein 3 1.5324
SLC17A4 solute carrier family 17, member 4 1.53119
BDH1 3-hydroxybutyrate dehydrogenase, type 1 1.53104
PANK1 pantothenate kinase 1 1.52856
STX3 syntaxin 3 1.52084
DGKH diacylglycerol kinase, eta 1.51848
ARPIN actin-related protein 2/3 complex inhibitor 1.51729
ETNK1 ethanolamine kinase 1 1.5166
LENG9 leukocyte receptor cluster (LRC) member 9 1.50292
ZUFSP zinc finger with UFM1-specific peptidase domain 1.5014
PEX5 peroxisomal biogenesis factor 5 1.50113
SCYL2 SCY1-like 2 (S. cerevisiae) 1.49859
ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 1.49742
METTL10 methyltransferase like 10 1.49493
ZFP62 ZFP62 zinc finger protein 1.49077
MANSC1 MANSC domain containing 1 1.48608
LINC00483 long intergenic non-protein coding RNA 483 1.48527
TOX3 TOX high mobility group box family member 3 1.4851
ALOX12B arachidonate 12-lipoxygenase, 12R type 1.48496
PRSS1 protease, serine, 1 (trypsin 1) 1.48049
LOC100288152 uncharacterized LOC100288152 1.4793
KITLG KIT ligand 1.47638
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 1.47629
RAP1GAP2 RAP1 GTPase activating protein 2 1.47613
COX15 cytochrome c oxidase assembly homolog 15 (yeast) 1.47524
NOXO1 NADPH oxidase organizer 1 1.47458
TMEM180 transmembrane protein 180 1.46951
C1QBP complement component 1, q subcomponent binding protein 1.46895
PUS7 pseudouridylate synthase 7 (putative) 1.46694
FUT10 fucosyltransferase 10 (alpha (1,3) fucosyltransferase) 1.46666
TIGD4 tigger transposable element derived 4 1.46178
ESD esterase D 1.45503
SEMG1 semenogelin I 1.45421
GBAS glioblastoma amplified sequence 1.45194
RNF148 ring finger protein 148 1.45132
SORBS1 sorbin and SH3 domain containing 1 1.4502
CNIH1 cornichon family AMPA receptor auxiliary protein 1 1.44799
GGCT gamma-glutamylcyclotransferase 1.44314
AMD1 adenosylmethionine decarboxylase 1 1.44288
SNHG5 small nucleolar RNA host gene 5 1.44256
CHRM3 cholinergic receptor, muscarinic 3 1.44027
HAUS6 HAUS augmin-like complex, subunit 6 1.43915
MRPS35 mitochondrial ribosomal protein S35 1.43701
MANEA mannosidase, endo-alpha 1.43501
SUGT1 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 1.43226
SYNPR synaptoporin 1.43168
FERMT1 fermitin family member 1 1.42966
UQCRC2 ubiquinol-cytochrome c reductase core protein II 1.42935
PCSK6 proprotein convertase subtilisin/kexin type 6 1.42885
PEX11G peroxisomal biogenesis factor 11 gamma 1.42861
PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit 1.42707
NFXL1 nuclear transcription factor, X-box binding-like 1 1.42159
AGMAT agmatine ureohydrolase (agmatinase) 1.41628
NUP43 nucleoporin 43kDa 1.41569
MTPAP mitochondrial poly(A) polymerase 1.41481
CEP72 centrosomal protein 72kDa 1.41028
VSNL1 visinin-like 1 1.40947
SMC3 structural maintenance of chromosomes 3 1.40723
SLC25A40 solute carrier family 25, member 40 1.40658
NUDT15 nudix (nucleoside diphosphate linked moiety X)-type motif 15 1.40632
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1 1.4057
CEP76 centrosomal protein 76kDa 1.40447
FCGBP Fc fragment of IgG binding protein 1.40195
C15ORF56 chromosome 15 open reading frame 56 1.40049
SDHD succinate dehydrogenase complex, subunit D, integral membrane protein 1.3983
FCAMR Fc receptor, IgA, IgM, high affinity 1.39484
FAM96A family with sequence similarity 96, member A 1.39283
IL17D interleukin 17D 1.39206
CAMLG calcium modulating ligand 1.38732
ALG5 ALG5, dolichyl-phosphate beta-glucosyltransferase 1.38496
DCAF16 DDB1 and CUL4 associated factor 16 1.38408
ZNF721 zinc finger protein 721 1.38401
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 1.38144
C9ORF152 chromosome 9 open reading frame 152 1.38003
PRPS2 phosphoribosyl pyrophosphate synthetase 2 1.37838
MPHOSPH9 M-phase phosphoprotein 9 1.37103
PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L 1.37097
BRAP BRCA1 associated protein 1.36853
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 1.36725
EPHB2 EPH receptor B2 1.36609
FAM199X family with sequence similarity 199, X-linked 1.36482
FAM198B family with sequence similarity 198, member B 1.36475
ZNF800 zinc finger protein 800 1.36455
RPL28 ribosomal protein L28 1.36447
RGMB repulsive guidance molecule family member b 1.3625
AP1AR adaptor-related protein complex 1 associated regulatory protein 1.3613
NUP62CL nucleoporin 62kDa C-terminal like 1.35748
PON3 paraoxonase 3 1.35505
ABHD6 abhydrolase domain containing 6 1.35213
PLEKHG6 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 1.34757

low expression

Symbol Name Standardized Value
ZKSCAN4 zinc finger with KRAB and SCAN domains 4 -3.5532
ZNF227 zinc finger protein 227 -3.50526
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) -3.32652
SMG8 SMG8 nonsense mediated mRNA decay factor -2.83697
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) -2.75309
ANKRD36BP2 ankyrin repeat domain 36B pseudogene 2 -2.72456
USP6 ubiquitin specific peptidase 6 -2.70518
URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) -2.46817
MCF2 MCF.2 cell line derived transforming sequence -2.36404
ZNF419 zinc finger protein 419 -2.31905
PLN phospholamban -2.30603
PLG plasminogen -2.2889
ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 -2.2779
HMGB4 high mobility group box 4 -2.24676
SERINC3 serine incorporator 3 -2.24076
TCEA2 transcription elongation factor A (SII), 2 -2.19794
ZNF264 zinc finger protein 264 -2.18989
DOK6 docking protein 6 -2.17472
KRT73 keratin 73, type II -2.12418
ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 -2.12061
THEG theg spermatid protein -2.11248
OLIG3 oligodendrocyte transcription factor 3 -2.11034
HYALP1 hyaluronoglucosaminidase pseudogene 1 -2.09864
LTN1 listerin E3 ubiquitin protein ligase 1 -2.07312
TTC29 tetratricopeptide repeat domain 29 -2.0532
ECI2 enoyl-CoA delta isomerase 2 -2.05276
SBNO1 strawberry notch homolog 1 (Drosophila) -2.04553
PRKACA protein kinase, cAMP-dependent, catalytic, alpha -2.03727
HSPA1B heat shock 70kDa protein 1B -2.02433
PRKACB protein kinase, cAMP-dependent, catalytic, beta -1.98567
RIOK3 RIO kinase 3 -1.98262
RDX radixin -1.97919
TMX3 thioredoxin-related transmembrane protein 3 -1.95229
HPR haptoglobin-related protein -1.95144
ZNF805 zinc finger protein 805 -1.95024
LOC340017 uncharacterized LOC340017 -1.92613
NPW neuropeptide W -1.92293
TXNDC9 thioredoxin domain containing 9 -1.90632
HELZ helicase with zinc finger -1.905
FAM117A family with sequence similarity 117, member A -1.88394
TSLIG3A tRNA splicing ligase complex subunit 3A -1.87934
TTC14 tetratricopeptide repeat domain 14 -1.87925
BNC1 basonuclin 1 -1.86853
ZNF211 zinc finger protein 211 -1.85728
DPP10 dipeptidyl-peptidase 10 (non-functional) -1.85241
LEPROT leptin receptor overlapping transcript -1.85204
LMAN2L lectin, mannose-binding 2-like -1.85128
MAP7D1 MAP7 domain containing 1 -1.84301
FAM127B family with sequence similarity 127, member B -1.82923
RAB3GAP2 RAB3 GTPase activating protein subunit 2 (non-catalytic) -1.82234
GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa -1.81238
ASAP1-IT1 ASAP1 intronic transcript 1 -1.80224
ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 -1.79776
TAS2R10 taste receptor, type 2, member 10 -1.796
OTOGL otogelin-like -1.79441
CRYBA2 crystallin, beta A2 -1.79056
TRIP4 thyroid hormone receptor interactor 4 -1.78224
MAP3K3 mitogen-activated protein kinase kinase kinase 3 -1.78052
RTN1 reticulon 1 -1.78049
MYO9A myosin IXA -1.77215
DCTN1 dynactin 1 -1.75692
MAGEB18 melanoma antigen family B18 -1.75427
NUDT12 nudix (nucleoside diphosphate linked moiety X)-type motif 12 -1.75281
QKI QKI, KH domain containing, RNA binding -1.75036
FAM179B family with sequence similarity 179, member B -1.73651
NKX3-2 NK3 homeobox 2 -1.73506
FNBP1 formin binding protein 1 -1.73479
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -1.72874
MTERF1 mitochondrial transcription termination factor 1 -1.70535
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) -1.69045
LOC100506014 -1.69033
ZNF45 zinc finger protein 45 -1.6876
SHISA3 shisa family member 3 -1.68532
C11ORF87 chromosome 11 open reading frame 87 -1.67603
GHR growth hormone receptor -1.67074
ACTRT2 actin-related protein T2 -1.66238
ELMSAN1 ELM2 and Myb/SANT-like domain containing 1 -1.66025
STK11IP serine/threonine kinase 11 interacting protein -1.65288
CHRDL1 chordin-like 1 -1.64078
ZFY-AS1 ZFY antisense RNA 1 -1.6397
ZNF614 zinc finger protein 614 -1.63627
THAP2 THAP domain containing, apoptosis associated protein 2 -1.63066
ZNF609 zinc finger protein 609 -1.63027
CYTIP cytohesin 1 interacting protein -1.62376
AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 -1.61957
SYNJ1 synaptojanin 1 -1.61819
KCNK12 potassium channel, two pore domain subfamily K, member 12 -1.61669
SEC24C SEC24 family member C -1.61173
ACSM5 acyl-CoA synthetase medium-chain family member 5 -1.60819
KANK4 KN motif and ankyrin repeat domains 4 -1.60756
TRPM1 transient receptor potential cation channel, subfamily M, member 1 -1.60721
SGCG sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) -1.6015
SSH2 slingshot protein phosphatase 2 -1.59697
ZNF548 zinc finger protein 548 -1.59569
PMP2 peripheral myelin protein 2 -1.59394
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -1.59155
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -1.58645
RTN4 reticulon 4 -1.58537
PCDH7 protocadherin 7 -1.5719
METTL9 methyltransferase like 9 -1.56903
RERG RAS-like, estrogen-regulated, growth inhibitor -1.56328
BIRC6 baculoviral IAP repeat containing 6 -1.56265
RBMS1 RNA binding motif, single stranded interacting protein 1 -1.56223
LOC100507065 uncharacterized LOC100507065 -1.56166
ZNF234 zinc finger protein 234 -1.55884
NAP1L2 nucleosome assembly protein 1-like 2 -1.54863
ZNF430 zinc finger protein 430 -1.54532
ADCY2 adenylate cyclase 2 (brain) -1.54485
TRAV34 T cell receptor alpha variable 34 -1.54434
GGA3 golgi-associated, gamma adaptin ear containing, ARF binding protein 3 -1.54332
ZNF426 zinc finger protein 426 -1.53994
XG Xg blood group -1.5348
MEF2D myocyte enhancer factor 2D -1.53209
PPP6R1 protein phosphatase 6, regulatory subunit 1 -1.53088
TXLNB taxilin beta -1.52943
AKT2 v-akt murine thymoma viral oncogene homolog 2 -1.52736
CABP5 calcium binding protein 5 -1.51484
NDUFV3 NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa -1.5123
ZNF512B zinc finger protein 512B -1.50858
ZNF233 zinc finger protein 233 -1.50343
GBE1 glucan (1,4-alpha-), branching enzyme 1 -1.50316
ACKR3 atypical chemokine receptor 3 -1.50084
LOC100507221 uncharacterized LOC100507221 -1.5002
KIFAP3 kinesin-associated protein 3 -1.49699
RPP30 ribonuclease P/MRP 30kDa subunit -1.4962
ZNF527 zinc finger protein 527 -1.49488
HDGFRP3 hepatoma-derived growth factor, related protein 3 -1.49264
MBL1P mannose-binding lectin (protein A) 1, pseudogene -1.49239
NUDT7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 -1.49234
TMEM212 transmembrane protein 212 -1.49105
TCN2 transcobalamin II -1.48917
TTLL9 tubulin tyrosine ligase-like family member 9 -1.48756
ZNFX1 zinc finger, NFX1-type containing 1 -1.48755
ANKDD1A ankyrin repeat and death domain containing 1A -1.48513
ZNF112 zinc finger protein 112 -1.4847
CCDC141 coiled-coil domain containing 141 -1.48297
HKR1 HKR1, GLI-Kruppel zinc finger family member -1.48133
PTPN5 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) -1.47996
RTFDC1 replication termination factor 2 domain containing 1 -1.47542
SAMD4B sterile alpha motif domain containing 4B -1.47237
SRSF6 serine/arginine-rich splicing factor 6 -1.4717
DCAF5 DDB1 and CUL4 associated factor 5 -1.47004
EMB embigin -1.4656
PDE3A phosphodiesterase 3A, cGMP-inhibited -1.46306
SDHC succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa -1.46022
IL1A interleukin 1, alpha -1.45942
TRIM44 tripartite motif containing 44 -1.45179