Larotrectinib sulfate_A498 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Larotrectinib sulfate perturbation in A498 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Larotrectinib sulfate_A498 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.255063
ZFP36L1 ZFP36 ring finger protein-like 1 0.138061
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.131096
RAI14 retinoic acid induced 14 0.120169
NRIP1 nuclear receptor interacting protein 1 0.114733
VIM vimentin 0.0948557
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0934128
CCL2 chemokine (C-C motif) ligand 2 0.0895475
NRP2 neuropilin 2 0.0852829
NAV2 neuron navigator 2 0.0835565
P3H2 prolyl 3-hydroxylase 2 0.0827691
VCAM1 vascular cell adhesion molecule 1 0.0814054
CD44 CD44 molecule (Indian blood group) 0.0772721
BHLHE40 basic helix-loop-helix family, member e40 0.0747543
B2M beta-2-microglobulin 0.0741981
CXCL8 chemokine (C-X-C motif) ligand 8 0.0683252
TNS3 tensin 3 0.0678451
RND3 Rho family GTPase 3 0.0675306
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0669799
PTBP3 polypyrimidine tract binding protein 3 0.0660035
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0638789
GPC6 glypican 6 0.0636242
TRIO trio Rho guanine nucleotide exchange factor 0.0633007
KLF7 Kruppel-like factor 7 (ubiquitous) 0.063039
SKAP2 src kinase associated phosphoprotein 2 0.062769
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0607159
AKT3 v-akt murine thymoma viral oncogene homolog 3 0.0582493
ITGAV integrin, alpha V 0.0566954
RB1CC1 RB1-inducible coiled-coil 1 0.0519486
SMAD3 SMAD family member 3 0.0511483
FBXO32 F-box protein 32 0.048911
RPS6 ribosomal protein S6 0.0472654
TAPBP TAP binding protein (tapasin) 0.0467519
CSF1 colony stimulating factor 1 (macrophage) 0.0464202
SOD2 superoxide dismutase 2, mitochondrial 0.0458866
RNF213 ring finger protein 213 0.0453026
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0443563
MYH9 myosin, heavy chain 9, non-muscle 0.0439301
OPTN optineurin 0.043255
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0431797
CENPF centromere protein F, 350/400kDa 0.0426825
ARRDC3 arrestin domain containing 3 0.0424024
APOL1 apolipoprotein L, 1 0.0420317
TGFB2 transforming growth factor, beta 2 0.0419415
RIGI RNA sensor RIG-I 0.0405721
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0388742
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.038659
TMBIM6 transmembrane BAX inhibitor motif containing 6 0.0384306
SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 0.0383998
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0377305
RICTOR RPTOR independent companion of MTOR, complex 2 0.0371242
IFT74 intraflagellar transport 74 0.0367978
EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1 0.0361704
MYOF myoferlin 0.0357443
HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5 0.0355697
ATP13A3 ATPase type 13A3 0.0355501
BICC1 BicC family RNA binding protein 1 0.0353928
FNDC3B fibronectin type III domain containing 3B 0.034831
NUB1 negative regulator of ubiquitin-like proteins 1 0.0347321
TMED9 transmembrane emp24 protein transport domain containing 9 0.0344588
SPATS2L spermatogenesis associated, serine-rich 2-like 0.0344042
SBF2 SET binding factor 2 0.0340253
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0338055
PLK2 polo-like kinase 2 0.0336628
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0334272
KTN1 kinectin 1 (kinesin receptor) 0.0330418
ADAM10 ADAM metallopeptidase domain 10 0.0330053
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0329592
LDHA lactate dehydrogenase A 0.0321055
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0315652
FLNB filamin B, beta 0.0315213
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.031235
MT2A metallothionein 2A 0.0311294
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0311292
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0311096
FAM13A family with sequence similarity 13, member A 0.0310209
ETV6 ets variant 6 0.0308157
COL4A1 collagen, type IV, alpha 1 0.0308148
B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 0.0302037
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0300981
GCC2 GRIP and coiled-coil domain containing 2 0.0297985
CALD1 caldesmon 1 0.0297162
EML4 echinoderm microtubule associated protein like 4 0.0296249
RACK1 receptor for activated C kinase 1 0.0289216
PREX2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 0.0288359
AHNAK AHNAK nucleoprotein 0.0286821
CD47 CD47 molecule 0.0286263
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0285329
UBA6 ubiquitin-like modifier activating enzyme 6 0.0282272
SHB Src homology 2 domain containing adaptor protein B 0.0282098
ITIH5 inter-alpha-trypsin inhibitor heavy chain family, member 5 0.0280693
MARCKS myristoylated alanine-rich protein kinase C substrate 0.0279663
RPS8 ribosomal protein S8 0.0279441
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0278489
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 0.0276184
GIGYF2 GRB10 interacting GYF protein 2 0.0276052
ZFAND5 zinc finger, AN1-type domain 5 0.026994
COL4A2 collagen, type IV, alpha 2 0.0269064
MINDY2 MINDY lysine 48 deubiquitinase 2 0.0267497
IFIH1 interferon induced with helicase C domain 1 0.0265618

decreased expression

Symbol Name Standardized Value
ASPH aspartate beta-hydroxylase -0.163945
IGFBP3 insulin-like growth factor binding protein 3 -0.163507
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0862821
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0842466
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0773619
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0691622
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0653143
CREB5 cAMP responsive element binding protein 5 -0.0636537
INTS6 integrator complex subunit 6 -0.0580153
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.055281
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0539326
P4HB prolyl 4-hydroxylase, beta polypeptide -0.052661
NUP98 nucleoporin 98kDa -0.0450061
PKM pyruvate kinase, muscle -0.0442277
POTEF POTE ankyrin domain family, member F -0.0434392
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0432137
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0430542
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0428452
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0418998
CTSD cathepsin D -0.0418056
UBAP2 ubiquitin associated protein 2 -0.0401338
RPS2 ribosomal protein S2 -0.0381931
PRKCA protein kinase C, alpha -0.0376502
PDLIM5 PDZ and LIM domain 5 -0.0368613
EIF3H eukaryotic translation initiation factor 3, subunit H -0.0361852
HM13 histocompatibility (minor) 13 -0.0359781
ANKRD17 ankyrin repeat domain 17 -0.0354996
PDIA3 protein disulfide isomerase family A, member 3 -0.0351103
TUSC3 tumor suppressor candidate 3 -0.0350107
RAB10 RAB10, member RAS oncogene family -0.0344857
SEC24D SEC24 family member D -0.0336846
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0333892
SLC31A1 solute carrier family 31 (copper transporter), member 1 -0.0332078
ELOVL5 ELOVL fatty acid elongase 5 -0.0321705
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0315355
IARS1 isoleucyl-tRNA synthetase 1 -0.0315291
TXNRD1 thioredoxin reductase 1 -0.030709
HIPK2 homeodomain interacting protein kinase 2 -0.0306599
CRY1 cryptochrome circadian clock 1 -0.0305353
COG6 component of oligomeric golgi complex 6 -0.0304577
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0301585
CSNK1A1 casein kinase 1, alpha 1 -0.0300273
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0294283
CALR calreticulin -0.0293549
SND1 staphylococcal nuclease and tudor domain containing 1 -0.0278012
SURF4 surfeit 4 -0.0277532
CLTC clathrin, heavy chain (Hc) -0.0275591
SCFD2 sec1 family domain containing 2 -0.0273796
ALCAM activated leukocyte cell adhesion molecule -0.0273252
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0273049
RPS24 ribosomal protein S24 -0.02725
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 -0.0269106
PCSK5 proprotein convertase subtilisin/kexin type 5 -0.0255401
INSIG1 insulin induced gene 1 -0.0252338
ZNF207 zinc finger protein 207 -0.0252082
SUCO SUN domain containing ossification factor -0.0250172
TASOR2 transcription activation suppressor family member 2 -0.0248978
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) -0.0247488
KDELR2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 -0.0247344
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0243236
FBXO11 F-box protein 11 -0.0243146
MON2 MON2 homolog (S. cerevisiae) -0.0242975
BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 -0.024091
AGO3 argonaute RISC catalytic component 3 -0.0239472
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.0238231
PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 -0.0236592
NAMPT nicotinamide phosphoribosyltransferase -0.023654
MRPS6 mitochondrial ribosomal protein S6 -0.023461
GOSR2 golgi SNAP receptor complex member 2 -0.0234031
DDIT4 DNA-damage-inducible transcript 4 -0.0231643
GPC5 glypican 5 -0.0231059
RPL3 ribosomal protein L3 -0.0230307
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0230198
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 -0.0227682
NOLC1 nucleolar and coiled-body phosphoprotein 1 -0.0226244
ACACA acetyl-CoA carboxylase alpha -0.0226205
PTGES2 prostaglandin E synthase 2 -0.0224523
PTPRG protein tyrosine phosphatase, receptor type, G -0.0222299
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0222171
ZFAND3 zinc finger, AN1-type domain 3 -0.0222164
CTBP2 C-terminal binding protein 2 -0.0221474
CRK v-crk avian sarcoma virus CT10 oncogene homolog -0.0220542
CSTF3 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa -0.0219478
ANO10 anoctamin 10 -0.0218284
MBNL1 muscleblind-like splicing regulator 1 -0.0217845
NOP58 NOP58 ribonucleoprotein -0.0216174
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 -0.021286
GPATCH2 G patch domain containing 2 -0.0211705
SPDYA speedy/RINGO cell cycle regulator family member A -0.0210452
COG5 component of oligomeric golgi complex 5 -0.0209597
PCLO piccolo presynaptic cytomatrix protein -0.0209345
TAOK1 TAO kinase 1 -0.0208534
RAB7A RAB7A, member RAS oncogene family -0.0207358
RPS5 ribosomal protein S5 -0.0205077
HSPB1 heat shock 27kDa protein 1 -0.020396
EEF2 eukaryotic translation elongation factor 2 -0.0203705
PBX1 pre-B-cell leukemia homeobox 1 -0.0203059
TMED3 transmembrane emp24 protein transport domain containing 3 -0.0201393
TUBA1C tubulin, alpha 1c -0.0201106
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 -0.0200433