Larotrectinib_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Larotrectinib perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Larotrectinib_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VIM vimentin 0.228935
WWTR1 WW domain containing transcription regulator 1 0.0925242
HLA-B major histocompatibility complex, class I, B 0.0871438
CAPRIN2 caprin family member 2 0.0707601
FTH1 ferritin, heavy polypeptide 1 0.0632681
PSD3 pleckstrin and Sec7 domain containing 3 0.0596978
ARHGAP5 Rho GTPase activating protein 5 0.0541031
RPS6 ribosomal protein S6 0.0529001
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0527264
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0525698
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.05237
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0493274
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0488119
PDE10A phosphodiesterase 10A 0.0474142
ZBTB38 zinc finger and BTB domain containing 38 0.0431658
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0420201
RPL35A ribosomal protein L35a 0.041708
IFIH1 interferon induced with helicase C domain 1 0.0409628
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0395802
HMGA1 high mobility group AT-hook 1 0.038621
WARS1 tryptophanyl-tRNA synthetase 1 0.0380113
ESYT2 extended synaptotagmin-like protein 2 0.0367748
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.0343168
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 0.0333436
RIGI RNA sensor RIG-I 0.0329642
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0316381
LOC102724023 ES1 protein homolog, mitochondrial 0.0314734
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0311593
VEGFC vascular endothelial growth factor C 0.0306202
TTC3 tetratricopeptide repeat domain 3 0.030383
JUN jun proto-oncogene 0.0301644
HOMER1 homer scaffolding protein 1 0.0294274
CUBN cubilin (intrinsic factor-cobalamin receptor) 0.0291626
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0291065
EZR ezrin 0.0285856
RPLP1 ribosomal protein, large, P1 0.0277575
B2M beta-2-microglobulin 0.0277244
BIRC3 baculoviral IAP repeat containing 3 0.0275792
OSBPL8 oxysterol binding protein-like 8 0.026971
SRRM2 serine/arginine repetitive matrix 2 0.0265196
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0261733
SP100 SP100 nuclear antigen 0.0260975
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0259041
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.0256448
RPL36 ribosomal protein L36 0.0252913
RPL7L1 ribosomal protein L7-like 1 0.0248713
KPNB1 karyopherin (importin) beta 1 0.0238542
NPAS2 neuronal PAS domain protein 2 0.0237344
HLA-E major histocompatibility complex, class I, E 0.0236658
ZDHHC14 zinc finger, DHHC-type containing 14 0.0232953
TMSB10 thymosin beta 10 0.0231641
FTL ferritin, light polypeptide 0.023063
RPS19 ribosomal protein S19 0.0226917
PTP4A2 protein tyrosine phosphatase type IVA, member 2 0.0226797
FNDC3B fibronectin type III domain containing 3B 0.0225489
ISG15 ISG15 ubiquitin-like modifier 0.0224967
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide 0.0224169
PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 0.0223949
IFITM3 interferon induced transmembrane protein 3 0.0223455
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0215549
EEF1G eukaryotic translation elongation factor 1 gamma 0.0213338
AHI1 Abelson helper integration site 1 0.0209818
ARL4C ADP-ribosylation factor-like 4C 0.020912
EEF2 eukaryotic translation elongation factor 2 0.0208886
RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 0.0207158
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.0202302
RPLP2 ribosomal protein, large, P2 0.0199656
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.0198705
PLK2 polo-like kinase 2 0.0198365
RPL37A ribosomal protein L37a 0.0190705
VMP1 vacuole membrane protein 1 0.0189062
RPS23 ribosomal protein S23 0.0188143
PYGB phosphorylase, glycogen; brain 0.0188106
RPL31 ribosomal protein L31 0.0184308
FN1 fibronectin 1 0.0182633
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0181936
IQGAP1 IQ motif containing GTPase activating protein 1 0.0178372
AREG amphiregulin 0.0177397
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0176013
CCNL1 cyclin L1 0.0173436
SGK1 serum/glucocorticoid regulated kinase 1 0.0173131
HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 0.0171318
GPATCH2 G patch domain containing 2 0.0171114
RPS8 ribosomal protein S8 0.0170602
RPL37 ribosomal protein L37 0.0170302
USP36 ubiquitin specific peptidase 36 0.0169702
VEGFA vascular endothelial growth factor A 0.0169264
TBCA tubulin folding cofactor A 0.0169099
PRRC2C proline-rich coiled-coil 2C 0.0167444
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0166886
PODXL podocalyxin-like 0.0166698
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.0165625
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.016542
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.0164866
UBE2E3 ubiquitin-conjugating enzyme E2E 3 0.0162557
SKIL SKI-like proto-oncogene 0.0161919
CXCL8 chemokine (C-X-C motif) ligand 8 0.0160599
RARS1 arginyl-tRNA synthetase 1 0.0160479
DTX3L deltex 3 like, E3 ubiquitin ligase 0.0158506
IFITM1 interferon induced transmembrane protein 1 0.0158221

decreased expression

Symbol Name Standardized Value
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.111111
RAD51B RAD51 paralog B -0.103725
TP63 tumor protein p63 -0.0921112
PRELID2 PRELI domain containing 2 -0.0839795
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0786043
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0780277
VCL vinculin -0.0735813
FMNL2 formin-like 2 -0.0636845
SBF2 SET binding factor 2 -0.0585895
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0565347
MT2A metallothionein 2A -0.0556272
EXOC4 exocyst complex component 4 -0.0543795
NEK10 NIMA-related kinase 10 -0.0529306
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 -0.0519658
SPAG9 sperm associated antigen 9 -0.0519597
DST dystonin -0.0516533
USP34 ubiquitin specific peptidase 34 -0.0516044
PGK1 phosphoglycerate kinase 1 -0.0513417
ZNF292 zinc finger protein 292 -0.0504885
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.049193
TNS3 tensin 3 -0.0490172
GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) -0.0479551
SRPK2 SRSF protein kinase 2 -0.0468812
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.046559
ANKRD12 ankyrin repeat domain 12 -0.0458251
TAS2R14 taste receptor, type 2, member 14 -0.0458009
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0453069
BRWD1 bromodomain and WD repeat domain containing 1 -0.0439755
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0429614
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0416737
DIAPH3 diaphanous-related formin 3 -0.0403911
ZNF217 zinc finger protein 217 -0.0403323
MBD5 methyl-CpG binding domain protein 5 -0.0399806
ZMYM2 zinc finger, MYM-type 2 -0.0397734
HPCAL1 hippocalcin-like 1 -0.0388517
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 -0.0388035
LPP LIM domain containing preferred translocation partner in lipoma -0.0386187
STRN3 striatin, calmodulin binding protein 3 -0.0374952
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.0373788
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0367956
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide -0.036728
ACBD6 acyl-CoA binding domain containing 6 -0.0364832
TTC28 tetratricopeptide repeat domain 28 -0.0364738
SPIDR scaffolding protein involved in DNA repair -0.0362872
FNIP1 folliculin interacting protein 1 -0.0357099
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.03525
DENND1A DENN/MADD domain containing 1A -0.034908
DPH6 diphthamine biosynthesis 6 -0.0346806
ARB2A ARB2 cotranscriptional regulator A -0.0346552
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0345428
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0344318
KCMF1 potassium channel modulatory factor 1 -0.0337151
ANKRD11 ankyrin repeat domain 11 -0.0333682
BIRC6 baculoviral IAP repeat containing 6 -0.0331172
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 -0.0329927
SMAD3 SMAD family member 3 -0.032914
USP9X ubiquitin specific peptidase 9, X-linked -0.0327231
MYOF myoferlin -0.0325354
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0324717
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0324694
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0322889
KDM4B lysine (K)-specific demethylase 4B -0.0322845
NF1 neurofibromin 1 -0.03219
NSD2 nuclear receptor binding SET domain protein 2 -0.0320635
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.031853
NUP58 nucleoporin 58 -0.0308456
TRA2A transformer 2 alpha homolog (Drosophila) -0.0307907
BMERB1 bMERB domain containing 1 -0.0305001
DYM dymeclin -0.0303924
POU2F1 POU class 2 homeobox 1 -0.0301953
LRRC49 leucine rich repeat containing 49 -0.0298669
ADAM17 ADAM metallopeptidase domain 17 -0.0298082
MNAT1 MNAT CDK-activating kinase assembly factor 1 -0.0297736
CENPF centromere protein F, 350/400kDa -0.0296755
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0293036
ATP9B ATPase, class II, type 9B -0.0292777
NCOR1 nuclear receptor corepressor 1 -0.0292731
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like -0.0292529
CCDC91 coiled-coil domain containing 91 -0.0291964
SDK1 sidekick cell adhesion molecule 1 -0.0291862
BCAS3 breast carcinoma amplified sequence 3 -0.029077
RTTN rotatin -0.0290721
TXNRD1 thioredoxin reductase 1 -0.0290015
EFNA5 ephrin-A5 -0.0286655
TBC1D22A TBC1 domain family, member 22A -0.028472
KDM3A lysine (K)-specific demethylase 3A -0.0282264
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase -0.0281656
CEP192 centrosomal protein 192kDa -0.0279117
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0277688
ACACA acetyl-CoA carboxylase alpha -0.0277087
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0276967
WSB1 WD repeat and SOCS box containing 1 -0.0274513
COG5 component of oligomeric golgi complex 5 -0.0274109
TRA2B transformer 2 beta homolog (Drosophila) -0.027372
AFF4 AF4/FMR2 family, member 4 -0.0271528
ACTN4 actinin, alpha 4 -0.0269785
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0269312
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0266315
PNISR PNN-interacting serine/arginine-rich protein -0.0264891
EXOC6B exocyst complex component 6B -0.0263397