Lenalidomide (hemihydrate)_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lenalidomide (hemihydrate) perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lenalidomide (hemihydrate)_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MT2A metallothionein 2A 0.14328
PM20D1 peptidase M20 domain containing 1 0.105519
AKAP12 A kinase (PRKA) anchor protein 12 0.090944
GRAMD1B GRAM domain containing 1B 0.090595
RPS6 ribosomal protein S6 0.0676349
WAC WW domain containing adaptor with coiled-coil 0.0532127
RBM25 RNA binding motif protein 25 0.0476208
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0451723
RPS29 ribosomal protein S29 0.0446419
SLC38A2 solute carrier family 38, member 2 0.0440164
KTN1 kinectin 1 (kinesin receptor) 0.0439089
RPLP1 ribosomal protein, large, P1 0.0433451
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0433123
TERF2IP telomeric repeat binding factor 2, interacting protein 0.0389183
USP36 ubiquitin specific peptidase 36 0.0371843
MED13 mediator complex subunit 13 0.0366882
RICTOR RPTOR independent companion of MTOR, complex 2 0.0366517
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0365601
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0356571
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0348542
RPL35A ribosomal protein L35a 0.034455
FBXO11 F-box protein 11 0.0340184
WWOX WW domain containing oxidoreductase 0.0339439
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0338462
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0337056
LOC102724023 ES1 protein homolog, mitochondrial 0.0336876
ZSWIM6 zinc finger, SWIM-type containing 6 0.0335217
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.033497
NR4A2 nuclear receptor subfamily 4, group A, member 2 0.0322514
PUM2 pumilio RNA-binding family member 2 0.0319694
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0315978
MCL1 myeloid cell leukemia 1 0.0313798
JMJD1C jumonji domain containing 1C 0.030997
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 0.0305088
PRRC2C proline-rich coiled-coil 2C 0.0304568
RPS8 ribosomal protein S8 0.030197
BCAR3 breast cancer anti-estrogen resistance 3 0.0301928
NIPBL Nipped-B homolog (Drosophila) 0.0296821
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0286499
GPHN gephyrin 0.0285329
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0282251
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0279097
MT1X metallothionein 1X 0.0275357
KCMF1 potassium channel modulatory factor 1 0.0273552
RPS27 ribosomal protein S27 0.0271272
ARID1B AT rich interactive domain 1B (SWI1-like) 0.0268188
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0268013
DSCAM Down syndrome cell adhesion molecule 0.0263163
HLA-A major histocompatibility complex, class I, A 0.026188
UBE2R2 ubiquitin-conjugating enzyme E2R 2 0.0261826
TSC22D2 TSC22 domain family, member 2 0.0261694
FLNB filamin B, beta 0.0261562
PHIP pleckstrin homology domain interacting protein 0.0257523
TPR translocated promoter region, nuclear basket protein 0.0254775
GOLGA4 golgin A4 0.0254706
B2M beta-2-microglobulin 0.025338
MARCHF6 membrane associated ring-CH-type finger 6 0.0251154
SETD5 SET domain containing 5 0.0251076
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0250596
NCEH1 neutral cholesterol ester hydrolase 1 0.0249088
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0242628
SVIL supervillin 0.0242577
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0240486
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0237159
BMP6 bone morphogenetic protein 6 0.0234901
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0230828
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 0.0229765
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0227526
ATP11A ATPase, class VI, type 11A 0.0225465
ITCH itchy E3 ubiquitin protein ligase 0.0224893
NEK7 NIMA-related kinase 7 0.0223798
PDE10A phosphodiesterase 10A 0.0222122
PFDN2 prefoldin subunit 2 0.0221916
TIMP1 TIMP metallopeptidase inhibitor 1 0.0221163
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0220579
RBM6 RNA binding motif protein 6 0.0220247
SOS2 son of sevenless homolog 2 (Drosophila) 0.0218301
RNF145 ring finger protein 145 0.0213409
CHD1 chromodomain helicase DNA binding protein 1 0.0209914
WWTR1 WW domain containing transcription regulator 1 0.0208561
WDR43 WD repeat domain 43 0.0206044
SRPK2 SRSF protein kinase 2 0.0205132
RPL28 ribosomal protein L28 0.0205036
ACTG1 actin gamma 1 0.0204665
WNK1 WNK lysine deficient protein kinase 1 0.0203937
EXT1 exostosin glycosyltransferase 1 0.020279
MATR3 matrin 3 0.0202508
EIF1 eukaryotic translation initiation factor 1 0.0200809
YLPM1 YLP motif containing 1 0.0200683
RPS20 ribosomal protein S20 0.0199665
WSB1 WD repeat and SOCS box containing 1 0.019784
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 0.0197501
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 0.019631
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.019575
CSNK1A1 casein kinase 1, alpha 1 0.0195202
SLMAP sarcolemma associated protein 0.0195144
APLP2 amyloid beta (A4) precursor-like protein 2 0.0194061
ITGB5 integrin, beta 5 0.0193399
MARK3 MAP/microtubule affinity-regulating kinase 3 0.0191532
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.0191365

decreased expression

Symbol Name Standardized Value
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.30274
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.292267
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.155816
TMSB10 thymosin beta 10 -0.137266
FTH1 ferritin, heavy polypeptide 1 -0.105992
FTL ferritin, light polypeptide -0.090722
THSD4 thrombospondin, type I, domain containing 4 -0.0905278
NQO1 NAD(P)H dehydrogenase, quinone 1 -0.0874751
AHNAK AHNAK nucleoprotein -0.0863634
RPS4Y1 ribosomal protein S4, Y-linked 1 -0.085464
ASPH aspartate beta-hydroxylase -0.0848963
FGB fibrinogen beta chain -0.0798704
LDHA lactate dehydrogenase A -0.0795841
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0714168
BICC1 BicC family RNA binding protein 1 -0.0705993
TM4SF1 transmembrane 4 L six family member 1 -0.0699786
APP amyloid beta (A4) precursor protein -0.068847
S100A6 S100 calcium binding protein A6 -0.0622945
RPL19 ribosomal protein L19 -0.0594068
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0586905
VIM vimentin -0.0583804
TPM3 tropomyosin 3 -0.0582317
UBC ubiquitin C -0.056439
SAMD4A sterile alpha motif domain containing 4A -0.054562
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0531215
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0482802
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 -0.0474972
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0460723
ENO1 enolase 1, (alpha) -0.0456589
SOD2 superoxide dismutase 2, mitochondrial -0.0449637
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0447353
PYGL phosphorylase, glycogen, liver -0.0435904
NEGR1 neuronal growth regulator 1 -0.0434901
DST dystonin -0.0432611
OSMR oncostatin M receptor -0.042827
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) -0.0425555
MAML3 mastermind-like 3 (Drosophila) -0.0418617
DOCK4 dedicator of cytokinesis 4 -0.0418404
DENND4A DENN/MADD domain containing 4A -0.0414031
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0413569
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0410722
EEF2 eukaryotic translation elongation factor 2 -0.0405049
HSPA8 heat shock 70kDa protein 8 -0.0403028
HDLBP high density lipoprotein binding protein -0.0399638
RPS27A ribosomal protein S27a -0.0395133
FLNA filamin A, alpha -0.038755
YBX1 Y box binding protein 1 -0.0382927
ANXA2 annexin A2 -0.0378517
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0374916
UTRN utrophin -0.0370458
TFPI2 tissue factor pathway inhibitor 2 -0.0370161
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0362873
CMIP c-Maf inducing protein -0.0356353
PTP4A1 protein tyrosine phosphatase type IVA, member 1 -0.0354855
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0348362
POTEF POTE ankyrin domain family, member F -0.0343644
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0339464
PFN1 profilin 1 -0.033434
EHBP1 EH domain binding protein 1 -0.0332373
TAGLN2 transgelin 2 -0.0328521
MACF1 microtubule-actin crosslinking factor 1 -0.0323811
THBS1 thrombospondin 1 -0.0323533
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.031898
RAD21 RAD21 homolog (S. pombe) -0.0316104
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0313568
TPM1 tropomyosin 1 (alpha) -0.0312256
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0305116
BIRC3 baculoviral IAP repeat containing 3 -0.0298038
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0297862
CALR calreticulin -0.029635
CANX calnexin -0.0291115
ADGRG6 adhesion G protein-coupled receptor G6 -0.0290274
CLDN1 claudin 1 -0.0287401
DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2 -0.0286683
AHNAK2 AHNAK nucleoprotein 2 -0.0285944
CFLAR CASP8 and FADD-like apoptosis regulator -0.0285845
AHR aryl hydrocarbon receptor -0.028567
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0284001
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0282582
IGFBP4 insulin-like growth factor binding protein 4 -0.0282447
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0281988
TTC28 tetratricopeptide repeat domain 28 -0.0281391
GLIS3 GLIS family zinc finger 3 -0.0281324
TPM4 tropomyosin 4 -0.027958
LOC112694756 uncharaterized LOC112694756 -0.0279428
BABAM2 BRISC and BRCA1 A complex member 2 -0.0275635
CFDP1 craniofacial development protein 1 -0.0274773
RHOA ras homolog family member A -0.0274665
SLC35F3 solute carrier family 35, member F3 -0.0274173
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0273722
VCL vinculin -0.0265984
TUBA1B tubulin, alpha 1b -0.0265307
ATP5F1B ATP synthase F1 subunit beta -0.0264748
RACK1 receptor for activated C kinase 1 -0.0264427
SDC4 syndecan 4 -0.0262888
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0262221
ANLN anillin, actin binding protein -0.0260704
SPDYA speedy/RINGO cell cycle regulator family member A -0.0257835
RPL4 ribosomal protein L4 -0.0252862
BLTP2 bridge-like lipid transfer protein family member 2 -0.0251139