Lenalidomide (hemihydrate)_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lenalidomide (hemihydrate) perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lenalidomide (hemihydrate)_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
COL8A1 collagen, type VIII, alpha 1 0.128166
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.123924
PM20D1 peptidase M20 domain containing 1 0.113538
DST dystonin 0.093549
KYNU kynureninase 0.0666488
PDLIM5 PDZ and LIM domain 5 0.065091
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0629549
GRAMD1B GRAM domain containing 1B 0.0615794
ESYT2 extended synaptotagmin-like protein 2 0.0615479
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 0.0586343
FNDC3A fibronectin type III domain containing 3A 0.0582637
GDA guanine deaminase 0.0561005
SH3KBP1 SH3-domain kinase binding protein 1 0.050454
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0487
UNC5D unc-5 homolog D (C. elegans) 0.0465329
ZEB2 zinc finger E-box binding homeobox 2 0.0460001
AKAP13 A kinase (PRKA) anchor protein 13 0.044111
COL4A5 collagen, type IV, alpha 5 0.0441045
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0412515
FMNL2 formin-like 2 0.0388285
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0377338
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0374544
CHL1 cell adhesion molecule L1-like 0.0371319
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0365439
JMJD1C jumonji domain containing 1C 0.0365215
SLF1 SMC5-SMC6 complex localization factor 1 0.0363639
DNER delta/notch-like EGF repeat containing 0.0362409
PTEN phosphatase and tensin homolog 0.0355333
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0338138
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0337758
N4BP2L2 NEDD4 binding protein 2-like 2 0.0319236
SLC38A2 solute carrier family 38, member 2 0.031641
NFX1 nuclear transcription factor, X-box binding 1 0.0316337
TMEM144 transmembrane protein 144 0.0315086
STC1 stanniocalcin 1 0.0310048
KMT2E lysine (K)-specific methyltransferase 2E 0.0307571
BZW1 basic leucine zipper and W2 domains 1 0.0306863
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit 0.0302384
ANTXR1 anthrax toxin receptor 1 0.0300949
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0294629
RASAL2 RAS protein activator like 2 0.029178
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0289972
BPTF bromodomain PHD finger transcription factor 0.0286885
COL4A6 collagen, type IV, alpha 6 0.0286812
CD44 CD44 molecule (Indian blood group) 0.027993
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0274549
DUSP4 dual specificity phosphatase 4 0.0273942
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0272944
DISP1 dispatched homolog 1 (Drosophila) 0.0272474
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0269929
ITGA6 integrin, alpha 6 0.0269833
PGM2L1 phosphoglucomutase 2-like 1 0.0268283
NT5C2 5'-nucleotidase, cytosolic II 0.0264583
HLA-A major histocompatibility complex, class I, A 0.0260757
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0255262
ITPRID2 ITPR interacting domain containing 2 0.0249471
SCARA5 scavenger receptor class A, member 5 0.0247252
RPLP0 ribosomal protein, large, P0 0.0246665
PGK1 phosphoglycerate kinase 1 0.024512
PPP1R3C protein phosphatase 1, regulatory subunit 3C 0.0243438
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0242237
ITGB8 integrin, beta 8 0.0242048
LDHA lactate dehydrogenase A 0.0239135
CTSL cathepsin L 0.0234208
P3H2 prolyl 3-hydroxylase 2 0.0233984
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 0.0226345
RGS2 regulator of G-protein signaling 2 0.0223909
PCBP2 poly(rC) binding protein 2 0.0221227
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) 0.0219695
DARS1 aspartyl-tRNA synthetase 1 0.0217439
TXNIP thioredoxin interacting protein 0.020843
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 0.0207696
NRDC nardilysin convertase 0.0207397
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0207354
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0205017
MAP7 microtubule-associated protein 7 0.0203671
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.0203651
AGTPBP1 ATP/GTP binding protein 1 0.0202836
GPRIN3 GPRIN family member 3 0.0202336
KPNB1 karyopherin (importin) beta 1 0.020166
OXSR1 oxidative stress responsive 1 0.0200713
DENND1B DENN/MADD domain containing 1B 0.0198902
ZBTB38 zinc finger and BTB domain containing 38 0.0198864
CLMP CXADR-like membrane protein 0.0198398
APLP2 amyloid beta (A4) precursor-like protein 2 0.0194922
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0190621
KIAA0825 KIAA0825 0.0189566
MAP3K20 mitogen-activated protein kinase kinase kinase 20 0.0189489
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0188792
SNCA synuclein, alpha (non A4 component of amyloid precursor) 0.0188193
PDIA3 protein disulfide isomerase family A, member 3 0.0187093
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase 0.0186903
MED13 mediator complex subunit 13 0.0186837
NSD1 nuclear receptor binding SET domain protein 1 0.0185335
ZNF638 zinc finger protein 638 0.0184081
EGR1 early growth response 1 0.0184064
B2M beta-2-microglobulin 0.0183404
PHF14 PHD finger protein 14 0.0183325
IGFBP3 insulin-like growth factor binding protein 3 0.0181941
R3HDM2 R3H domain containing 2 0.018115

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.158159
FN1 fibronectin 1 -0.153738
ASPH aspartate beta-hydroxylase -0.147989
PDE4D phosphodiesterase 4D, cAMP-specific -0.132299
CDH13 cadherin 13 -0.117213
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.116291
TMSB10 thymosin beta 10 -0.1149
EFNA5 ephrin-A5 -0.0977376
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0859977
PTMA prothymosin, alpha -0.0834728
PCBP3 poly(rC) binding protein 3 -0.0796614
FNDC3B fibronectin type III domain containing 3B -0.0756912
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0716736
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0711543
ADGRD1 adhesion G protein-coupled receptor D1 -0.0629886
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.058334
NALF1 NALCN channel auxiliary factor 1 -0.0565052
FTL ferritin, light polypeptide -0.0539368
SMYD3 SET and MYND domain containing 3 -0.0533882
RPL23 ribosomal protein L23 -0.0458669
AUTS2 autism susceptibility candidate 2 -0.04586
RPS24 ribosomal protein S24 -0.0405503
NCOR2 nuclear receptor corepressor 2 -0.0402152
SPAG9 sperm associated antigen 9 -0.0400389
SOD2 superoxide dismutase 2, mitochondrial -0.0397055
FTH1 ferritin, heavy polypeptide 1 -0.0397048
LSAMP limbic system-associated membrane protein -0.0396052
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.038479
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0382189
BASP1 brain abundant, membrane attached signal protein 1 -0.0371845
GRB10 growth factor receptor-bound protein 10 -0.0370742
NCKAP5 NCK-associated protein 5 -0.0356354
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0354809
RPL35A ribosomal protein L35a -0.0351511
OASL 2'-5'-oligoadenylate synthetase-like -0.0335124
FLNA filamin A, alpha -0.0328205
VCL vinculin -0.0314739
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0309968
TTC28 tetratricopeptide repeat domain 28 -0.0308351
RPL34 ribosomal protein L34 -0.030469
TM4SF1 transmembrane 4 L six family member 1 -0.0294092
GNAS GNAS complex locus -0.0292805
RPS6 ribosomal protein S6 -0.0292422
RAD51B RAD51 paralog B -0.0292255
RPS19 ribosomal protein S19 -0.0290126
RPL13A ribosomal protein L13a -0.0289714
YBX1 Y box binding protein 1 -0.0284481
TFPI2 tissue factor pathway inhibitor 2 -0.0278348
RPS21 ribosomal protein S21 -0.0278181
RBM39 RNA binding motif protein 39 -0.0270632
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0270255
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0267866
RRBP1 ribosome binding protein 1 -0.0267848
ANKRD11 ankyrin repeat domain 11 -0.0265399
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0264326
RPH3AL rabphilin 3A-like (without C2 domains) -0.0262758
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0262344
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0261759
MKI67 marker of proliferation Ki-67 -0.0259699
KDM3A lysine (K)-specific demethylase 3A -0.0258431
LIMCH1 LIM and calponin homology domains 1 -0.0256924
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0256127
RPS2 ribosomal protein S2 -0.0254578
TRA2A transformer 2 alpha homolog (Drosophila) -0.0253602
IFRD1 interferon-related developmental regulator 1 -0.0252525
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0252417
SRGN serglycin -0.0249984
GLS2 glutaminase 2 (liver, mitochondrial) -0.024772
KMT2C lysine (K)-specific methyltransferase 2C -0.024546
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0244631
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0238533
MAP4 microtubule-associated protein 4 -0.0238493
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0238105
OGT O-linked N-acetylglucosamine (GlcNAc) transferase -0.0234274
OGA O-GlcNAcase -0.0232271
HDLBP high density lipoprotein binding protein -0.0231937
ISG15 ISG15 ubiquitin-like modifier -0.0228665
RPS23 ribosomal protein S23 -0.0228658
RPL12 ribosomal protein L12 -0.0228033
RPL26 ribosomal protein L26 -0.0227793
WARS1 tryptophanyl-tRNA synthetase 1 -0.0226624
SLCO1C1 solute carrier organic anion transporter family, member 1C1 -0.022549
CADM2 cell adhesion molecule 2 -0.0224469
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0223666
SDK1 sidekick cell adhesion molecule 1 -0.0223068
RPL5 ribosomal protein L5 -0.021995
CAMTA1 calmodulin binding transcription activator 1 -0.0218351
SOX6 SRY (sex determining region Y)-box 6 -0.0218142
RPL35 ribosomal protein L35 -0.021719
FUS FUS RNA binding protein -0.0216771
AKR1C1 aldo-keto reductase family 1, member C1 -0.0214558
LAMA5 laminin, alpha 5 -0.0212002
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 -0.02112
SKP1 S-phase kinase-associated protein 1 -0.0211104
TPT1 tumor protein, translationally-controlled 1 -0.0209092
DENND1A DENN/MADD domain containing 1A -0.0208007
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0207781
ANXA1 annexin A1 -0.0207296
NCOA7 nuclear receptor coactivator 7 -0.0206719
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0206614