Lidocaine (hydrochloride)_C-33 A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lidocaine (hydrochloride) perturbation in C-33 A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lidocaine (hydrochloride)_C-33 A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
COL5A2 collagen, type V, alpha 2 0.222914
ZNF608 zinc finger protein 608 0.174369
ERBB4 erb-b2 receptor tyrosine kinase 4 0.160544
VCL vinculin 0.147285
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 0.115909
ADGRG6 adhesion G protein-coupled receptor G6 0.114135
TOX thymocyte selection-associated high mobility group box 0.108954
DST dystonin 0.106685
RPL3 ribosomal protein L3 0.0912962
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0870013
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0853071
DSCAM Down syndrome cell adhesion molecule 0.0833735
LOC112694756 uncharaterized LOC112694756 0.0832184
USP9X ubiquitin specific peptidase 9, X-linked 0.0774756
NR4A3 nuclear receptor subfamily 4, group A, member 3 0.0770996
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0739436
NFIA nuclear factor I/A 0.0708143
SLIT2 slit homolog 2 (Drosophila) 0.0682678
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.066867
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0627371
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0607629
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0602891
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0580015
NALF1 NALCN channel auxiliary factor 1 0.0577489
JMJD1C jumonji domain containing 1C 0.0566799
EEF2 eukaryotic translation elongation factor 2 0.0564325
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0553628
ATP9A ATPase, class II, type 9A 0.0546282
EXT1 exostosin glycosyltransferase 1 0.0538797
USP34 ubiquitin specific peptidase 34 0.0532487
VMP1 vacuole membrane protein 1 0.0530025
APLP2 amyloid beta (A4) precursor-like protein 2 0.0527737
RCC1 regulator of chromosome condensation 1 0.0517992
BNC2 basonuclin 2 0.0516481
KTN1 kinectin 1 (kinesin receptor) 0.0514878
HSPA8 heat shock 70kDa protein 8 0.0477917
SOX5 SRY (sex determining region Y)-box 5 0.0467889
MLIP muscular LMNA-interacting protein 0.0465354
H1-4 H1.4 linker histone, cluster member 0.0462231
CNN2 calponin 2 0.0453175
MED13 mediator complex subunit 13 0.0449018
SIK3 SIK family kinase 3 0.0439794
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.043767
ZFAND3 zinc finger, AN1-type domain 3 0.0432495
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0426736
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0423004
CREBBP CREB binding protein 0.0414834
PCM1 pericentriolar material 1 0.0414711
SLC38A2 solute carrier family 38, member 2 0.0413433
WLS wntless Wnt ligand secretion mediator 0.0412592
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0411318
ARID1B AT rich interactive domain 1B (SWI1-like) 0.0409405
ATP11A ATPase, class VI, type 11A 0.0404983
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0403989
UBAP2 ubiquitin associated protein 2 0.0397584
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0396753
ZSWIM6 zinc finger, SWIM-type containing 6 0.0395771
FERMT2 fermitin family member 2 0.0386806
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0386415
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0378893
SETD5 SET domain containing 5 0.0378726
TNRC18 trinucleotide repeat containing 18 0.0375029
RPS4X ribosomal protein S4, X-linked 0.0373853
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0373714
PRRC2B proline-rich coiled-coil 2B 0.0370356
TENM3 teneurin transmembrane protein 3 0.0368014
FLNA filamin A, alpha 0.0367758
BRD2 bromodomain containing 2 0.0367156
SMC1A structural maintenance of chromosomes 1A 0.0366696
SNX14 sorting nexin 14 0.0363894
HDLBP high density lipoprotein binding protein 0.0362964
TBL1X transducin (beta)-like 1X-linked 0.0360339
PHF21A PHD finger protein 21A 0.0356531
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0353146
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0348909
GNAS GNAS complex locus 0.0348379
RPL13A ribosomal protein L13a 0.0347568
BCAS3 breast carcinoma amplified sequence 3 0.03472
ARMH4 armadillo like helical domain containing 4 0.0343879
EFNA5 ephrin-A5 0.0339071
KMT2E lysine (K)-specific methyltransferase 2E 0.0336538
AKAP9 A kinase (PRKA) anchor protein 9 0.0335915
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0333886
STRN3 striatin, calmodulin binding protein 3 0.0332369
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0330193
H1-0 H1.0 linker histone 0.032506
PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 0.0324581
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0323276
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0319246
CCDC88A coiled-coil domain containing 88A 0.0317859
JARID2 jumonji, AT rich interactive domain 2 0.0316035
UBC ubiquitin C 0.0315476
PCBP2 poly(rC) binding protein 2 0.0313118
NFIB nuclear factor I/B 0.0312352
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0311955
CAPZB capping protein (actin filament) muscle Z-line, beta 0.0305347
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0304466
MAML3 mastermind-like 3 (Drosophila) 0.0302609
NBEAL1 neurobeachin-like 1 0.0300539
ELF2 E74-like factor 2 (ets domain transcription factor) 0.02989

decreased expression

Symbol Name Standardized Value
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.113521
CTNNA3 catenin (cadherin-associated protein), alpha 3 -0.113294
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0458432
RSL1D1 ribosomal L1 domain containing 1 -0.0389343
HMGA1 high mobility group AT-hook 1 -0.0372916
RPS21 ribosomal protein S21 -0.0349802
TRIO trio Rho guanine nucleotide exchange factor -0.0341314
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 -0.033061
ACACA acetyl-CoA carboxylase alpha -0.031985
CTNNA2 catenin (cadherin-associated protein), alpha 2 -0.0296601
SERBP1 SERPINE1 mRNA binding protein 1 -0.0269746
PTMA prothymosin, alpha -0.0267883
RIGI RNA sensor RIG-I -0.0264702
RPL12 ribosomal protein L12 -0.0264136
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0263695
TMX3 thioredoxin-related transmembrane protein 3 -0.0262274
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0261337
TTC28 tetratricopeptide repeat domain 28 -0.0252469
BRWD1 bromodomain and WD repeat domain containing 1 -0.0249669
ACTG1 actin gamma 1 -0.0235487
TMSB10 thymosin beta 10 -0.0230304
RPLP1 ribosomal protein, large, P1 -0.0224314
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0221695
SMYD3 SET and MYND domain containing 3 -0.0215377
NEBL nebulette -0.0214993
EMP1 epithelial membrane protein 1 -0.0207031
FNBP4 formin binding protein 4 -0.0199081
ZFP64 ZFP64 zinc finger protein -0.0192987
NT5C2 5'-nucleotidase, cytosolic II -0.018703
FAM117B family with sequence similarity 117, member B -0.0181772
TXNRD1 thioredoxin reductase 1 -0.0179765
RPL35A ribosomal protein L35a -0.0177707
RANBP17 RAN binding protein 17 -0.0175823
RPL22 ribosomal protein L22 -0.0175146
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0168527
MTAP methylthioadenosine phosphorylase -0.0167757
LARS1 leucyl-tRNA synthetase 1 -0.0167301
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.016689
MIB1 mindbomb E3 ubiquitin protein ligase 1 -0.0166145
PNPT1 polyribonucleotide nucleotidyltransferase 1 -0.0165699
CPA6 carboxypeptidase A6 -0.0162877
RPL30 ribosomal protein L30 -0.0162768
ZFR zinc finger RNA binding protein -0.0162356
MYL12B myosin, light chain 12B, regulatory -0.0161824
YEATS2 YEATS domain containing 2 -0.0161323
ALDH7A1 aldehyde dehydrogenase 7 family, member A1 -0.0160862
CDV3 CDV3 homolog (mouse) -0.0160075
CBX3 chromobox homolog 3 -0.0158333
NR6A1 nuclear receptor subfamily 6, group A, member 1 -0.0158204
TMEM117 transmembrane protein 117 -0.0158061
WDR43 WD repeat domain 43 -0.015795
BRI3BP BRI3 binding protein -0.015724
ROCK1 Rho-associated, coiled-coil containing protein kinase 1 -0.0155932
EWSR1 EWS RNA-binding protein 1 -0.0154733
LARP1 La ribonucleoprotein domain family, member 1 -0.0152733
RIMS2 regulating synaptic membrane exocytosis 2 -0.0149463
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 -0.0148679
MAP4 microtubule-associated protein 4 -0.0146341
POLR3G polymerase (RNA) III (DNA directed) polypeptide G (32kD) -0.0146184
CA5B carbonic anhydrase VB, mitochondrial -0.0145449
UBE2K ubiquitin-conjugating enzyme E2K -0.0145014
CFAP97 cilia and flagella associated protein 97 -0.0143415
LMAN1 lectin, mannose-binding, 1 -0.0142272
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0139546
MRPS27 mitochondrial ribosomal protein S27 -0.0138735
WDR27 WD repeat domain 27 -0.0138668
KMT2A lysine (K)-specific methyltransferase 2A -0.0138395
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0137812
ANXA2 annexin A2 -0.0137781
SREBF1 sterol regulatory element binding transcription factor 1 -0.0136272
RPL7L1 ribosomal protein L7-like 1 -0.0136108
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.01357
TUBA1C tubulin, alpha 1c -0.0134702
R3HDM1 R3H domain containing 1 -0.0133316
NIPSNAP2 nipsnap homolog 2 -0.0132966
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) -0.0132327
SEC63 SEC63 homolog (S. cerevisiae) -0.013202
KIAA1671 KIAA1671 -0.0131286
RPL11 ribosomal protein L11 -0.0131271
FBXO17 F-box protein 17 -0.0130331
MRPL42 mitochondrial ribosomal protein L42 -0.0129998
SRSF2 serine/arginine-rich splicing factor 2 -0.0129733
MXI1 MAX interactor 1, dimerization protein -0.0129713
KPNB1 karyopherin (importin) beta 1 -0.0129397
MSH5 mutS homolog 5 -0.0128668
HDAC9 histone deacetylase 9 -0.0128154
RAI14 retinoic acid induced 14 -0.0127729
AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 -0.0126891
KANK2 KN motif and ankyrin repeat domains 2 -0.0126495
IGF2 insulin-like growth factor 2 -0.0126347
RPL39 ribosomal protein L39 -0.0125846
EIF5B eukaryotic translation initiation factor 5B -0.0124767
AFG2A AFG2 AAA ATPase homolog A -0.0124729
ZNF217 zinc finger protein 217 -0.0124359
ATF4 activating transcription factor 4 -0.012424
KCMF1 potassium channel modulatory factor 1 -0.0124137
VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) -0.0123311
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0122841
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0122826
OLA1 Obg-like ATPase 1 -0.0122724