Lidocaine (hydrochloride)_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lidocaine (hydrochloride) perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lidocaine (hydrochloride)_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FLNA filamin A, alpha 0.123438
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0939582
PLEC plectin 0.089142
LOC112694756 uncharaterized LOC112694756 0.0815248
PKM pyruvate kinase, muscle 0.0743254
RNF213 ring finger protein 213 0.0703769
PLAT plasminogen activator, tissue 0.0680763
SEPTIN9 septin 9 0.0651967
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.0616779
MYH9 myosin, heavy chain 9, non-muscle 0.0597077
POTEF POTE ankyrin domain family, member F 0.0590912
CTTN cortactin 0.0576632
RPL3 ribosomal protein L3 0.0568653
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0536246
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) 0.0533941
MSN moesin 0.0532397
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0456634
NAV2 neuron navigator 2 0.0450264
SFTPA2 surfactant protein A2 0.0449284
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0445909
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0444477
MACF1 microtubule-actin crosslinking factor 1 0.043945
RHOA ras homolog family member A 0.0436401
CD59 CD59 molecule, complement regulatory protein 0.0436242
RUNX1 runt-related transcription factor 1 0.043431
MCL1 myeloid cell leukemia 1 0.0427618
AMOTL1 angiomotin like 1 0.0423253
ACTN1 actinin, alpha 1 0.0418883
SETD5 SET domain containing 5 0.0418495
FLNB filamin B, beta 0.0413211
CYB5R3 cytochrome b5 reductase 3 0.0409199
NAV1 neuron navigator 1 0.0408379
EEF2 eukaryotic translation elongation factor 2 0.0403766
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0403528
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0387788
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0387642
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.038547
ZMIZ1 zinc finger, MIZ-type containing 1 0.0379918
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0368906
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0367272
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0359478
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0356392
CENPF centromere protein F, 350/400kDa 0.0355126
SMAD3 SMAD family member 3 0.0354883
ANGPTL4 angiopoietin-like 4 0.0354715
AKAP12 A kinase (PRKA) anchor protein 12 0.0354487
RPS4X ribosomal protein S4, X-linked 0.0349997
RANGAP1 Ran GTPase activating protein 1 0.03477
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0341548
WWTR1 WW domain containing transcription regulator 1 0.0340927
EZR ezrin 0.0338526
ANXA2 annexin A2 0.0337663
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0336817
TRIP12 thyroid hormone receptor interactor 12 0.0336374
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0336345
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0335118
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0332564
HDAC4 histone deacetylase 4 0.0327239
DIAPH1 diaphanous-related formin 1 0.0322173
ADAR adenosine deaminase, RNA-specific 0.0321823
ATXN1 ataxin 1 0.0317928
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0316432
TOB2 transducer of ERBB2, 2 0.0313575
AKAP13 A kinase (PRKA) anchor protein 13 0.0313481
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0313159
CD44 CD44 molecule (Indian blood group) 0.0311968
ACTG1 actin gamma 1 0.0308195
CCND1 cyclin D1 0.0306872
LAMB1 laminin, beta 1 0.0303009
KTN1 kinectin 1 (kinesin receptor) 0.0301547
CSNK1A1 casein kinase 1, alpha 1 0.0301299
OSBPL10 oxysterol binding protein-like 10 0.0301254
IPO7 importin 7 0.0300452
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.029977
PTPRG protein tyrosine phosphatase, receptor type, G 0.029873
DST dystonin 0.0297121
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0296924
H1-4 H1.4 linker histone, cluster member 0.0296787
SP100 SP100 nuclear antigen 0.0295975
LMNA lamin A/C 0.029434
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0293218
ZMYND8 zinc finger, MYND-type containing 8 0.0291606
SLC38A2 solute carrier family 38, member 2 0.0290714
WARS1 tryptophanyl-tRNA synthetase 1 0.0288682
MBNL1 muscleblind-like splicing regulator 1 0.0286749
DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 0.0285088
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0284015
NIBAN2 niban apoptosis regulator 2 0.0283022
TIMP2 TIMP metallopeptidase inhibitor 2 0.0280407
FAM78B family with sequence similarity 78, member B 0.0277809
RPS3 ribosomal protein S3 0.027528
WWOX WW domain containing oxidoreductase 0.0272201
TPM3 tropomyosin 3 0.0270661
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 0.0266789
FNDC3B fibronectin type III domain containing 3B 0.0266397
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0265408
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.0264109
SRRM2 serine/arginine repetitive matrix 2 0.026324
ETV6 ets variant 6 0.0260345
ZC3H7B zinc finger CCCH-type containing 7B 0.0259281

decreased expression

Symbol Name Standardized Value
NLGN1 neuroligin 1 -0.198031
FN1 fibronectin 1 -0.183713
LSAMP limbic system-associated membrane protein -0.132997
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.107707
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.100993
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0964648
VIM vimentin -0.0838146
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0558881
IL1RAP interleukin 1 receptor accessory protein -0.0536859
CANX calnexin -0.0528974
MT2A metallothionein 2A -0.0524272
TNNC1 troponin C type 1 (slow) -0.0512881
FRMD4A FERM domain containing 4A -0.047246
CADM1 cell adhesion molecule 1 -0.043655
MMP12 matrix metallopeptidase 12 -0.0389544
TMSB10 thymosin beta 10 -0.0363612
ARHGAP5 Rho GTPase activating protein 5 -0.0358101
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0351426
FMN1 formin 1 -0.0349098
EHBP1 EH domain binding protein 1 -0.0325902
MARCHF1 membrane associated ring-CH-type finger 1 -0.0321721
EIF1 eukaryotic translation initiation factor 1 -0.031109
SBF2 SET binding factor 2 -0.0305198
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.0301452
INPP5F inositol polyphosphate-5-phosphatase F -0.0301264
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0300593
RPL34 ribosomal protein L34 -0.0286407
FHIT fragile histidine triad -0.0286122
ICAM1 intercellular adhesion molecule 1 -0.0275223
FMNL2 formin-like 2 -0.0272774
CLINT1 clathrin interactor 1 -0.0267762
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0265702
IGF1R insulin-like growth factor 1 receptor -0.0255658
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein -0.025136
TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) -0.0250359
MT1X metallothionein 1X -0.0246938
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0245942
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -0.0245034
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0240616
TPTEP2-CSNK1E TPTEP2-CSNK1E readthrough -0.0238029
PPP2CA protein phosphatase 2, catalytic subunit, alpha isozyme -0.0235783
TP63 tumor protein p63 -0.0234647
JMJD1C jumonji domain containing 1C -0.023319
LINGO2 leucine rich repeat and Ig domain containing 2 -0.0233125
TFRC transferrin receptor -0.0230121
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0229626
PUM2 pumilio RNA-binding family member 2 -0.0226328
NAMPT nicotinamide phosphoribosyltransferase -0.0221796
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0221406
NGLY1 N-glycanase 1 -0.0219924
DIAPH2 diaphanous-related formin 2 -0.0219722
CNIH3 cornichon family AMPA receptor auxiliary protein 3 -0.0217996
RNF24 ring finger protein 24 -0.0217546
KMT2C lysine (K)-specific methyltransferase 2C -0.0214924
LMAN1 lectin, mannose-binding, 1 -0.0212269
VDAC1 voltage-dependent anion channel 1 -0.0209899
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0208647
STRN3 striatin, calmodulin binding protein 3 -0.0207464
CNKSR3 CNKSR family member 3 -0.0203826
NRG3 neuregulin 3 -0.0203735
STAG2 stromal antigen 2 -0.0203338
RNF130 ring finger protein 130 -0.0202088
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0201865
TIMP3 TIMP metallopeptidase inhibitor 3 -0.020103
LCORL ligand dependent nuclear receptor corepressor-like -0.0200907
COMMD10 COMM domain containing 10 -0.019517
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0194744
RSL1D1 ribosomal L1 domain containing 1 -0.0192836
KPNB1 karyopherin (importin) beta 1 -0.019245
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0192439
ZNF292 zinc finger protein 292 -0.0189571
RPL30 ribosomal protein L30 -0.0187401
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0185819
MON2 MON2 homolog (S. cerevisiae) -0.0184588
NRN1 neuritin 1 -0.018406
TFPI2 tissue factor pathway inhibitor 2 -0.018387
PTPRM protein tyrosine phosphatase, receptor type, M -0.0183434
SENP5 SUMO1/sentrin specific peptidase 5 -0.0181913
PEX5L peroxisomal biogenesis factor 5-like -0.0181212
LARS1 leucyl-tRNA synthetase 1 -0.0179327
RAD21 RAD21 homolog (S. pombe) -0.0178063
CFDP1 craniofacial development protein 1 -0.0177797
TRIM33 tripartite motif containing 33 -0.017734
SOX5 SRY (sex determining region Y)-box 5 -0.0175738
CCDC47 coiled-coil domain containing 47 -0.0175014
MCTP2 multiple C2 domains, transmembrane 2 -0.0174816
ARFGEF3 ARFGEF family member 3 -0.0174502
GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 -0.0174338
FILIP1 filamin A interacting protein 1 -0.0173113
NR6A1 nuclear receptor subfamily 6, group A, member 1 -0.01731
KDM3A lysine (K)-specific demethylase 3A -0.0172898
U2SURP U2 snRNP-associated SURP domain containing -0.0172862
IFRD1 interferon-related developmental regulator 1 -0.017279
RPL12 ribosomal protein L12 -0.0172243
ABI1 abl-interactor 1 -0.0172041
SEC63 SEC63 homolog (S. cerevisiae) -0.0171886
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0169543
NSUN6 NOP2/Sun domain family, member 6 -0.0168607
NDRG1 N-myc downstream regulated 1 -0.0167434
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0166383