Lipoic acid_A-172 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in A-172 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_A-172 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.133924
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.119843
PALM2AKAP2 PALM2 and AKAP2 fusion 0.101654
HDAC9 histone deacetylase 9 0.089787
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0875602
PLAT plasminogen activator, tissue 0.0860179
IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 0.0775777
EGFR epidermal growth factor receptor 0.0755555
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0737347
ANKRD11 ankyrin repeat domain 11 0.0657844
NAV2 neuron navigator 2 0.0652139
CALR calreticulin 0.0618675
PODXL podocalyxin-like 0.0608257
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0534635
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0503529
GOLGB1 golgin B1 0.0476108
AKAP12 A kinase (PRKA) anchor protein 12 0.0471556
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0468509
TPM3 tropomyosin 3 0.0458999
TPM4 tropomyosin 4 0.0444612
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0438564
AHNAK2 AHNAK nucleoprotein 2 0.0429598
MYADM myeloid-associated differentiation marker 0.0424414
BCL2L1 BCL2-like 1 0.0415794
ERBIN erbb2 interacting protein 0.0404599
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0386511
GOLGA4 golgin A4 0.038383
SEPTIN9 septin 9 0.0382984
PRKCE protein kinase C, epsilon 0.0381253
EEF2 eukaryotic translation elongation factor 2 0.0377087
FNDC3B fibronectin type III domain containing 3B 0.035441
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0353853
RABGAP1L RAB GTPase activating protein 1-like 0.0353756
SMYD3 SET and MYND domain containing 3 0.0353404
PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit 0.0349985
DOCK5 dedicator of cytokinesis 5 0.0347713
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.034008
E2F7 E2F transcription factor 7 0.0339967
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0337854
OPTN optineurin 0.0336786
SRRM2 serine/arginine repetitive matrix 2 0.0335831
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0335233
CDH13 cadherin 13 0.0333806
CD99 CD99 molecule 0.0312668
NFE2L1 nuclear factor, erythroid 2-like 1 0.0310306
NIBAN1 niban apoptosis regulator 1 0.0309234
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) 0.0307198
AKAP9 A kinase (PRKA) anchor protein 9 0.0306113
ASPH aspartate beta-hydroxylase 0.0301378
ATP13A3 ATPase type 13A3 0.0301076
RND3 Rho family GTPase 3 0.0299261
IL6ST interleukin 6 signal transducer 0.0294825
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0294347
DST dystonin 0.0290602
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0290195
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0281773
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 0.0276761
MYH9 myosin, heavy chain 9, non-muscle 0.0272172
SETX senataxin 0.0270563
LDHA lactate dehydrogenase A 0.0268374
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0267501
TXNRD1 thioredoxin reductase 1 0.0266868
VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 0.0266698
ANXA2 annexin A2 0.0265541
BTBD10 BTB (POZ) domain containing 10 0.0262685
MSN moesin 0.0261581
BPTF bromodomain PHD finger transcription factor 0.0258049
DSPP dentin sialophosphoprotein 0.0256531
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0254695
ICE1 interactor of little elongation complex ELL subunit 1 0.0254331
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0253798
ANKRD30B ankyrin repeat domain 30B 0.0253793
PDIA6 protein disulfide isomerase family A, member 6 0.0251941
B2M beta-2-microglobulin 0.0251277
L1CAM L1 cell adhesion molecule 0.0250517
MED13 mediator complex subunit 13 0.0250215
LYST lysosomal trafficking regulator 0.0249839
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0249631
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0249235
SET SET nuclear proto-oncogene 0.0247326
PDLIM5 PDZ and LIM domain 5 0.0247154
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0246807
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0246697
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0246601
AFF3 AF4/FMR2 family, member 3 0.0245202
DOCK9 dedicator of cytokinesis 9 0.0244344
MCTP1 multiple C2 domains, transmembrane 1 0.0243237
PCLO piccolo presynaptic cytomatrix protein 0.0241378
ASTN2 astrotactin 2 0.0239365
XPC xeroderma pigmentosum, complementation group C 0.0238709
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D 0.0238097
AAK1 AP2 associated kinase 1 0.0237988
PRRC2C proline-rich coiled-coil 2C 0.0237867
XKR6 XK, Kell blood group complex subunit-related family, member 6 0.0236829
REST RE1-silencing transcription factor 0.0235974
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0235939
NCOR2 nuclear receptor corepressor 2 0.0230096
JMJD1C jumonji domain containing 1C 0.0229349
NEK7 NIMA-related kinase 7 0.0229059
CD44 CD44 molecule (Indian blood group) 0.0228777

decreased expression

Symbol Name Standardized Value
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.149317
TMSB10 thymosin beta 10 -0.142914
ABI3BP ABI family, member 3 (NESH) binding protein -0.123274
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.122344
FBN1 fibrillin 1 -0.101031
COL8A1 collagen, type VIII, alpha 1 -0.0939862
RIGI RNA sensor RIG-I -0.0886168
DLG1 discs, large homolog 1 (Drosophila) -0.0871762
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 -0.0830577
NAV1 neuron navigator 1 -0.0819108
AHNAK AHNAK nucleoprotein -0.0816171
SOD2 superoxide dismutase 2, mitochondrial -0.0791069
THBS2 thrombospondin 2 -0.0779206
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.0760833
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0746183
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0745475
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0743438
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0735792
MEIS2 Meis homeobox 2 -0.0657812
COL5A2 collagen, type V, alpha 2 -0.064866
COL5A1 collagen, type V, alpha 1 -0.0647411
MT2A metallothionein 2A -0.0640344
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.06351
FN1 fibronectin 1 -0.0604434
SAMD9 sterile alpha motif domain containing 9 -0.0594982
PRSS23 protease, serine, 23 -0.0544827
TMSB4X thymosin beta 4, X-linked -0.0542442
FSTL1 follistatin-like 1 -0.0541074
COL1A2 collagen, type I, alpha 2 -0.051307
PGK1 phosphoglycerate kinase 1 -0.0502139
LOXL2 lysyl oxidase-like 2 -0.0502112
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0479283
IGFBP3 insulin-like growth factor binding protein 3 -0.0463641
MSI2 musashi RNA-binding protein 2 -0.0459591
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0450434
MX2 MX dynamin-like GTPase 2 -0.0449065
PTMA prothymosin, alpha -0.0382473
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0378036
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0377603
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 -0.0370318
FNDC3A fibronectin type III domain containing 3A -0.036894
DIRAS3 DIRAS family, GTP-binding RAS-like 3 -0.0367642
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.0366465
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.036597
DKK3 dickkopf WNT signaling pathway inhibitor 3 -0.0354504
IFIH1 interferon induced with helicase C domain 1 -0.0352792
TPT1 tumor protein, translationally-controlled 1 -0.0347881
S100A10 S100 calcium binding protein A10 -0.0343999
SLC38A1 solute carrier family 38, member 1 -0.0339526
ANKRD10 ankyrin repeat domain 10 -0.0334506
SOX9 SRY (sex determining region Y)-box 9 -0.0334354
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) -0.0331706
TRIO trio Rho guanine nucleotide exchange factor -0.0326791
SPAG9 sperm associated antigen 9 -0.0324672
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0313703
HLA-B major histocompatibility complex, class I, B -0.0303903
BHLHE40 basic helix-loop-helix family, member e40 -0.0302079
COL4A2 collagen, type IV, alpha 2 -0.0299292
OASL 2'-5'-oligoadenylate synthetase-like -0.0296085
TAGLN2 transgelin 2 -0.0295595
NT5C2 5'-nucleotidase, cytosolic II -0.0289782
CAVIN1 caveolae associated protein 1 -0.028734
SORBS2 sorbin and SH3 domain containing 2 -0.0280345
WARS1 tryptophanyl-tRNA synthetase 1 -0.0277693
AEBP2 AE binding protein 2 -0.0265895
JAZF1 JAZF zinc finger 1 -0.0265503
SUCNR1 succinate receptor 1 -0.0264453
SSBP2 single-stranded DNA binding protein 2 -0.0256351
HLA-C major histocompatibility complex, class I, C -0.0254718
LOC112694756 uncharaterized LOC112694756 -0.0253758
HILPDA hypoxia inducible lipid droplet-associated -0.0253148
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0252017
IFI16 interferon, gamma-inducible protein 16 -0.0250425
KDM3A lysine (K)-specific demethylase 3A -0.0248017
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0247016
LRRC17 leucine rich repeat containing 17 -0.0243508
TNS3 tensin 3 -0.0241854
GNAS GNAS complex locus -0.0241041
DPYSL3 dihydropyrimidinase-like 3 -0.0239313
COL3A1 collagen, type III, alpha 1 -0.0239031
TRA2A transformer 2 alpha homolog (Drosophila) -0.0237761
PSD3 pleckstrin and Sec7 domain containing 3 -0.0234999
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0233592
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0231815
PCDH7 protocadherin 7 -0.0231245
S100A4 S100 calcium binding protein A4 -0.0226536
CAV1 caveolin 1, caveolae protein, 22kDa -0.0225763
PDE4D phosphodiesterase 4D, cAMP-specific -0.0222772
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 -0.0222391
MT1X metallothionein 1X -0.0222238
DDR2 discoidin domain receptor tyrosine kinase 2 -0.0221909
ACTG1 actin gamma 1 -0.0221194
FRMD4A FERM domain containing 4A -0.0218718
IER3 immediate early response 3 -0.0218048
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -0.0217976
CUX1 cut-like homeobox 1 -0.0216154
PIAS1 protein inhibitor of activated STAT, 1 -0.0216025
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 -0.0215795
CBX3 chromobox homolog 3 -0.0214932
VDAC1 voltage-dependent anion channel 1 -0.0214878