Lipoic acid_BT-474 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in BT-474 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_BT-474 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VMP1 vacuole membrane protein 1 0.0981069
NDRG1 N-myc downstream regulated 1 0.0857164
FBXL20 F-box and leucine-rich repeat protein 20 0.0670385
VEGFA vascular endothelial growth factor A 0.054435
NCOA3 nuclear receptor coactivator 3 0.0492829
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0446292
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0442055
ITCH itchy E3 ubiquitin protein ligase 0.0437574
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0374794
ZFP36L1 ZFP36 ring finger protein-like 1 0.0370709
ESYT2 extended synaptotagmin-like protein 2 0.0366775
TSC22D2 TSC22 domain family, member 2 0.0356974
KDM2A lysine (K)-specific demethylase 2A 0.0347493
GRB10 growth factor receptor-bound protein 10 0.0331836
INTS6 integrator complex subunit 6 0.0315907
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0314867
ZNF292 zinc finger protein 292 0.0311589
UNC13B unc-13 homolog B (C. elegans) 0.0305472
FAM168A family with sequence similarity 168, member A 0.0299361
CSNK1A1 casein kinase 1, alpha 1 0.0295197
PIP4K2B phosphatidylinositol-5-phosphate 4-kinase, type II, beta 0.0292986
KMT2E lysine (K)-specific methyltransferase 2E 0.027901
IGFBP5 insulin-like growth factor binding protein 5 0.027523
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0270901
FXR1 fragile X mental retardation, autosomal homolog 1 0.0266948
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0265754
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.026123
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0261137
RAB7A RAB7A, member RAS oncogene family 0.0257298
FTH1 ferritin, heavy polypeptide 1 0.0256497
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0248047
RPS3 ribosomal protein S3 0.0245309
BRD4 bromodomain containing 4 0.0244142
RPL37A ribosomal protein L37a 0.0240021
PDLIM5 PDZ and LIM domain 5 0.0236875
TPD52 tumor protein D52 0.0235981
APLP2 amyloid beta (A4) precursor-like protein 2 0.0231728
PCBP2 poly(rC) binding protein 2 0.0231337
RTN3 reticulon 3 0.0225629
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0223492
RAB6A RAB6A, member RAS oncogene family 0.0222858
VIPR2 vasoactive intestinal peptide receptor 2 0.0219818
USO1 USO1 vesicle transport factor 0.0218527
ANKRD12 ankyrin repeat domain 12 0.0218238
ZSWIM6 zinc finger, SWIM-type containing 6 0.0215531
MMP24OS MMP24 opposite strand 0.0213991
POTEF POTE ankyrin domain family, member F 0.0213373
CEMIP cell migration inducing protein, hyaluronan binding 0.0207643
YAP1 Yes-associated protein 1 0.0206809
HELZ helicase with zinc finger 0.0200377
PKM pyruvate kinase, muscle 0.0200163
ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide 0.0199589
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0199236
LIMCH1 LIM and calponin homology domains 1 0.0198293
TPM3 tropomyosin 3 0.019783
UBE2H ubiquitin-conjugating enzyme E2H 0.0197666
UBA6 ubiquitin-like modifier activating enzyme 6 0.0195227
RUNX1 runt-related transcription factor 1 0.0195179
MCL1 myeloid cell leukemia 1 0.0194689
CCNL1 cyclin L1 0.0194644
GIGYF2 GRB10 interacting GYF protein 2 0.0192375
SRRM2 serine/arginine repetitive matrix 2 0.0190889
FGD4 FYVE, RhoGEF and PH domain containing 4 0.0190069
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0187952
RCOR1 REST corepressor 1 0.0186963
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0185545
AHCTF1 AT hook containing transcription factor 1 0.0184635
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0183909
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0182719
UGCG UDP-glucose ceramide glucosyltransferase 0.0182493
PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform 0.0182304
LARP1B La ribonucleoprotein domain family, member 1B 0.0180267
PRRC2C proline-rich coiled-coil 2C 0.0179457
DENND5A DENN/MADD domain containing 5A 0.017895
CMIP c-Maf inducing protein 0.0177601
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0177557
SCFD1 sec1 family domain containing 1 0.017725
LCOR ligand dependent nuclear receptor corepressor 0.0177209
SLC22A23 solute carrier family 22, member 23 0.0177093
AFF1 AF4/FMR2 family, member 1 0.0176569
TAB3 TGF-beta activated kinase 1/MAP3K7 binding protein 3 0.0175986
PLEKHG4B pleckstrin homology domain containing, family G (with RhoGef domain) member 4B 0.0174632
GATAD2B GATA zinc finger domain containing 2B 0.0174488
KRT86 keratin 86, type II 0.0174474
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0172901
TRA2A transformer 2 alpha homolog (Drosophila) 0.0171946
DGKD diacylglycerol kinase, delta 130kDa 0.0171693
AKAP9 A kinase (PRKA) anchor protein 9 0.0169722
ANKRD17 ankyrin repeat domain 17 0.0169135
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0166928
PCGF2 polycomb group ring finger 2 0.0166396
WASF2 WAS protein family, member 2 0.0166265
SETD5 SET domain containing 5 0.016589
SBF2 SET binding factor 2 0.0164931
LDHA lactate dehydrogenase A 0.0163462
EGLN3 egl-9 family hypoxia-inducible factor 3 0.0160919
TOB1 transducer of ERBB2, 1 0.0159849
SPAG9 sperm associated antigen 9 0.0159745
SEC16A SEC16 homolog A (S. cerevisiae) 0.0158263
KMT2C lysine (K)-specific methyltransferase 2C 0.0157011

decreased expression

Symbol Name Standardized Value
ACACA acetyl-CoA carboxylase alpha -0.139402
CATSPERB catsper channel auxiliary subunit beta -0.1218
ZMYND8 zinc finger, MYND-type containing 8 -0.109993
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0764402
ASPH aspartate beta-hydroxylase -0.0745544
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0660551
THSD4 thrombospondin, type I, domain containing 4 -0.0646236
TRPS1 trichorhinophalangeal syndrome I -0.060746
RARRES1 retinoic acid receptor responder (tazarotene induced) 1 -0.0579524
OSMR oncostatin M receptor -0.0562474
CDK12 cyclin-dependent kinase 12 -0.0550312
CCND1 cyclin D1 -0.0507346
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 -0.0490607
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0472049
IL1RAPL2 interleukin 1 receptor accessory protein-like 2 -0.0464675
RPL19 ribosomal protein L19 -0.0451002
TMSB4X thymosin beta 4, X-linked -0.0425391
AHNAK AHNAK nucleoprotein -0.0388021
PBX1 pre-B-cell leukemia homeobox 1 -0.037484
MT2A metallothionein 2A -0.0373031
RIMS2 regulating synaptic membrane exocytosis 2 -0.0348593
S100A9 S100 calcium binding protein A9 -0.0348253
S100A8 S100 calcium binding protein A8 -0.0342375
DNAH14 dynein, axonemal, heavy chain 14 -0.0337768
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0331087
EXT1 exostosin glycosyltransferase 1 -0.0324541
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.032394
TC2N tandem C2 domains, nuclear -0.0313221
TCN1 transcobalamin I (vitamin B12 binding protein, R binder family) -0.0309024
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0308593
TPT1 tumor protein, translationally-controlled 1 -0.0308326
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0307418
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.030595
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 -0.0300222
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) -0.0299929
ZNF217 zinc finger protein 217 -0.0294037
TMSB10 thymosin beta 10 -0.0290055
TTC6 tetratricopeptide repeat domain 6 -0.0284011
BCAS1 breast carcinoma amplified sequence 1 -0.0281326
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0277116
PGK1 phosphoglycerate kinase 1 -0.0276741
ZNFX1 zinc finger, NFX1-type containing 1 -0.0270668
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase -0.0269441
BZW1 basic leucine zipper and W2 domains 1 -0.026713
SLC38A1 solute carrier family 38, member 1 -0.0266857
PLSCR1 phospholipid scramblase 1 -0.0264877
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.026432
NCOA7 nuclear receptor coactivator 7 -0.0263767
TENM2 teneurin transmembrane protein 2 -0.0263745
NAMPT nicotinamide phosphoribosyltransferase -0.0262284
GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 -0.0256162
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0250669
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 -0.0250292
PTPRK protein tyrosine phosphatase, receptor type, K -0.0249789
SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 -0.0249091
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0248331
SYTL2 synaptotagmin-like 2 -0.0246461
ARID5B AT rich interactive domain 5B (MRF1-like) -0.0243919
FOXP1 forkhead box P1 -0.0243901
WARS1 tryptophanyl-tRNA synthetase 1 -0.0234289
MYO1D myosin ID -0.023408
SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 -0.0233676
NRG3 neuregulin 3 -0.023279
ACSS2 acyl-CoA synthetase short-chain family member 2 -0.0232122
TNS3 tensin 3 -0.0231376
TMC5 transmembrane channel-like 5 -0.0228522
GSK3B glycogen synthase kinase 3 beta -0.0226916
SMIM14 small integral membrane protein 14 -0.0225135
CD164 CD164 molecule, sialomucin -0.0225103
DTNA dystrobrevin, alpha -0.0222012
RPL35A ribosomal protein L35a -0.0220562
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0220057
GNAS GNAS complex locus -0.0219935
GLCCI1 glucocorticoid induced 1 -0.0214043
CEP250 centrosomal protein 250kDa -0.0212919
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0211894
DPYD dihydropyrimidine dehydrogenase -0.0210545
ANKLE2 ankyrin repeat and LEM domain containing 2 -0.021037
LOC112694756 uncharaterized LOC112694756 -0.0206222
KRT7 keratin 7, type II -0.0205116
RAD21 RAD21 homolog (S. pombe) -0.0205008
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0204561
RESF1 retroelement silencing factor 1 -0.0204109
S100A6 S100 calcium binding protein A6 -0.0203833
LGALS12 lectin, galactoside-binding, soluble, 12 -0.0201095
IFIH1 interferon induced with helicase C domain 1 -0.0199997
NT5C2 5'-nucleotidase, cytosolic II -0.0198426
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0197524
TENM4 teneurin transmembrane protein 4 -0.0195632
AUTS2 autism susceptibility candidate 2 -0.0191549
ARHGAP29 Rho GTPase activating protein 29 -0.0191413
ZFAND6 zinc finger, AN1-type domain 6 -0.0191127
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 -0.0187609
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0187279
DSG2 desmoglein 2 -0.0187267
FDPS farnesyl diphosphate synthase -0.0186369
CDH15 cadherin 15, type 1, M-cadherin (myotubule) -0.0185639
TNNC1 troponin C type 1 (slow) -0.0184996
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0180396
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0179854