Lipoic acid_C32 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in C32 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_C32 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.10891
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.101594
FN1 fibronectin 1 0.0727151
PDIA4 protein disulfide isomerase family A, member 4 0.0661745
TMEM178B transmembrane protein 178B 0.0608013
IGFBP3 insulin-like growth factor binding protein 3 0.0572722
PRELID2 PRELI domain containing 2 0.0543468
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 0.0523862
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0468137
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0415418
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0399381
LEF1 lymphoid enhancer-binding factor 1 0.0341616
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0325983
TLE4 transducin-like enhancer of split 4 0.0300851
PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 0.0298497
PHC2 polyhomeotic homolog 2 (Drosophila) 0.0292073
ZSWIM6 zinc finger, SWIM-type containing 6 0.0284966
WWTR1 WW domain containing transcription regulator 1 0.0265352
SETBP1 SET binding protein 1 0.0262886
COPA coatomer protein complex, subunit alpha 0.025472
COG5 component of oligomeric golgi complex 5 0.0253239
GLS2 glutaminase 2 (liver, mitochondrial) 0.0237012
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0236788
NBAS neuroblastoma amplified sequence 0.0231668
ATXN1 ataxin 1 0.0231309
SEL1L sel-1 suppressor of lin-12-like (C. elegans) 0.0217035
CEMIP2 cell migration inducing hyaluronidase 2 0.0210209
PTCHD4 patched domain containing 4 0.0201832
SND1 staphylococcal nuclease and tudor domain containing 1 0.0200558
EXOC4 exocyst complex component 4 0.019868
UTRN utrophin 0.0180401
USP53 ubiquitin specific peptidase 53 0.0180035
FAM3C family with sequence similarity 3, member C 0.0179845
MBD5 methyl-CpG binding domain protein 5 0.0177753
UBN2 ubinuclein 2 0.0177647
TRIM9 tripartite motif containing 9 0.0177254
ZFAND3 zinc finger, AN1-type domain 3 0.0175856
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0173348
FLNB filamin B, beta 0.0168841
UBE2H ubiquitin-conjugating enzyme E2H 0.0167093
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0166809
RNASE12 ribonuclease, RNase A family, 12 (non-active) 0.0166489
HYOU1 hypoxia up-regulated 1 0.0164961
VMP1 vacuole membrane protein 1 0.0164347
SETX senataxin 0.016121
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.016077
ANK2 ankyrin 2, neuronal 0.0157925
INTS6 integrator complex subunit 6 0.0157825
EFCAB13 EF-hand calcium binding domain 13 0.015695
COG6 component of oligomeric golgi complex 6 0.015323
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0152768
MACF1 microtubule-actin crosslinking factor 1 0.0151864
ZMIZ1 zinc finger, MIZ-type containing 1 0.0151699
APLP2 amyloid beta (A4) precursor-like protein 2 0.0151596
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0151263
TBC1D22A TBC1 domain family, member 22A 0.0151175
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0151064
SEC24D SEC24 family member D 0.0150268
DST dystonin 0.0149568
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0146831
PTPRM protein tyrosine phosphatase, receptor type, M 0.0146077
MTERF1 mitochondrial transcription termination factor 1 0.0143325
CALR calreticulin 0.0142725
IFRD1 interferon-related developmental regulator 1 0.0142321
SFPQ splicing factor proline/glutamine-rich 0.0142257
PTK2 protein tyrosine kinase 2 0.0141761
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0141329
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0141091
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0140562
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0140383
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0137688
CADM1 cell adhesion molecule 1 0.013679
SEC31A SEC31 homolog A (S. cerevisiae) 0.0136035
GOLGB1 golgin B1 0.0135273
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 0.0134536
SOX13 SRY (sex determining region Y)-box 13 0.0133095
PDLIM5 PDZ and LIM domain 5 0.0132861
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0130955
BRIP1 BRCA1 interacting protein C-terminal helicase 1 0.0130468
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0130134
ARHGEF2 Rho/Rac guanine nucleotide exchange factor (GEF) 2 0.0129408
ACTN1 actinin, alpha 1 0.0128918
PAX3 paired box 3 0.0127001
SEM1 SEM1 26S proteasome subunit 0.0126895
ZFYVE28 zinc finger, FYVE domain containing 28 0.0126006
OSBPL10 oxysterol binding protein-like 10 0.0125239
ANO6 anoctamin 6 0.0124548
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0123705
CTBP2 C-terminal binding protein 2 0.0122318
NRIP1 nuclear receptor interacting protein 1 0.0121853
ACSL3 acyl-CoA synthetase long-chain family member 3 0.012021
TTC3 tetratricopeptide repeat domain 3 0.0119562
LRMDA leucine rich melanocyte differentiation associated 0.0119156
PACSIN2 protein kinase C and casein kinase substrate in neurons 2 0.0119083
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.0118749
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0115827
SLIT2 slit homolog 2 (Drosophila) 0.0115433
BTBD9 BTB (POZ) domain containing 9 0.0115164
TRAPPC9 trafficking protein particle complex 9 0.0115163
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 0.0114875

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.236401
VIM vimentin -0.14321
VGF VGF nerve growth factor inducible -0.096534
IGFBP5 insulin-like growth factor binding protein 5 -0.081287
FRMD4A FERM domain containing 4A -0.0757347
DCT dopachrome tautomerase -0.0686108
IFI16 interferon, gamma-inducible protein 16 -0.0658137
ENO1 enolase 1, (alpha) -0.0576815
HLA-B major histocompatibility complex, class I, B -0.0567464
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0557835
S100A6 S100 calcium binding protein A6 -0.0555065
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0545819
ACTG1 actin gamma 1 -0.054118
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0531195
CENPF centromere protein F, 350/400kDa -0.0518144
TMSB10 thymosin beta 10 -0.0517587
NAMPT nicotinamide phosphoribosyltransferase -0.0499315
PGK1 phosphoglycerate kinase 1 -0.0488348
GPC6 glypican 6 -0.0465654
HILPDA hypoxia inducible lipid droplet-associated -0.0446686
MT2A metallothionein 2A -0.0421578
PTMA prothymosin, alpha -0.0401028
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0397072
CALD1 caldesmon 1 -0.0368173
RUNX1 runt-related transcription factor 1 -0.0354127
WSB1 WD repeat and SOCS box containing 1 -0.0320617
CD109 CD109 molecule -0.0320416
HMCN1 hemicentin 1 -0.0318504
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0314952
COL19A1 collagen, type XIX, alpha 1 -0.0307291
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0304149
NAV3 neuron navigator 3 -0.0298923
NDRG1 N-myc downstream regulated 1 -0.0291767
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0281082
TPI1 triosephosphate isomerase 1 -0.027889
VDAC1 voltage-dependent anion channel 1 -0.0277917
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0274672
IER3 immediate early response 3 -0.0274236
NPC1 Niemann-Pick disease, type C1 -0.0272859
TMEM123 transmembrane protein 123 -0.0268705
POTEF POTE ankyrin domain family, member F -0.0268191
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0268105
RPLP1 ribosomal protein, large, P1 -0.0263069
WDR45B WD repeat domain 45B -0.0255165
GNAS GNAS complex locus -0.0254562
RPS8 ribosomal protein S8 -0.0250017
TAGLN2 transgelin 2 -0.0244789
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain -0.0243151
LOC102724023 ES1 protein homolog, mitochondrial -0.0240512
AKAP12 A kinase (PRKA) anchor protein 12 -0.0233147
TPT1 tumor protein, translationally-controlled 1 -0.0230147
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0227723
CHSY1 chondroitin sulfate synthase 1 -0.0225366
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0224071
RPL35A ribosomal protein L35a -0.0220606
ZMYND8 zinc finger, MYND-type containing 8 -0.0220125
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0215689
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0213799
PKM pyruvate kinase, muscle -0.0213556
BACE2 beta-site APP-cleaving enzyme 2 -0.0210153
SCFD2 sec1 family domain containing 2 -0.0207567
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0206895
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0203973
ADM adrenomedullin -0.0203666
IFITM3 interferon induced transmembrane protein 3 -0.0201859
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.020172
LAMB1 laminin, beta 1 -0.0201322
FMN1 formin 1 -0.0199179
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0198582
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -0.0197163
GDF15 growth differentiation factor 15 -0.0196552
S100A9 S100 calcium binding protein A9 -0.0195385
DDIT4 DNA-damage-inducible transcript 4 -0.0193098
EHBP1 EH domain binding protein 1 -0.0190555
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0190041
B2M beta-2-microglobulin -0.0189657
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0189028
RPL37A ribosomal protein L37a -0.0188317
LOC112694756 uncharaterized LOC112694756 -0.0187415
IFI6 interferon, alpha-inducible protein 6 -0.0186786
S100A10 S100 calcium binding protein A10 -0.0184839
MTPN myotrophin -0.0183113
RPS12 ribosomal protein S12 -0.0182935
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0182612
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0180084
FAM162A family with sequence similarity 162, member A -0.0179784
A2M alpha-2-macroglobulin -0.0179723
CD63 CD63 molecule -0.0177771
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0176796
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0173723
RPL11 ribosomal protein L11 -0.0173418
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0172849
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0172835
MMP14 matrix metallopeptidase 14 (membrane-inserted) -0.0169646
OSMR oncostatin M receptor -0.0169076
PLIN2 perilipin 2 -0.0169051
RPL34 ribosomal protein L34 -0.0168974
RPLP0 ribosomal protein, large, P0 -0.0167716
ICAM1 intercellular adhesion molecule 1 -0.0167454
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0166486