Lipoic acid_CFPAC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in CFPAC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_CFPAC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 0.161656
FTH1 ferritin, heavy polypeptide 1 0.100716
SAMD4A sterile alpha motif domain containing 4A 0.0670103
DTNA dystrobrevin, alpha 0.0533855
GRB10 growth factor receptor-bound protein 10 0.0437335
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.042725
ANKRD11 ankyrin repeat domain 11 0.039122
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0340427
STC2 stanniocalcin 2 0.0335288
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.0327023
RIMKLB ribosomal modification protein rimK-like family member B 0.0324247
APLP2 amyloid beta (A4) precursor-like protein 2 0.0323552
PPARD peroxisome proliferator-activated receptor delta 0.0313124
VEGFA vascular endothelial growth factor A 0.0312604
CEMIP cell migration inducing protein, hyaluronan binding 0.0294972
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.02854
TTC3 tetratricopeptide repeat domain 3 0.0279586
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0270061
BACE2 beta-site APP-cleaving enzyme 2 0.0268921
ADAM28 ADAM metallopeptidase domain 28 0.0261764
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 0.0258825
LAMB3 laminin, beta 3 0.0252494
TGM2 transglutaminase 2 0.0239601
RAD51B RAD51 paralog B 0.0235138
SGMS2 sphingomyelin synthase 2 0.0225826
GOLGB1 golgin B1 0.0218002
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0215671
OPTN optineurin 0.020694
SLCO4A1 solute carrier organic anion transporter family, member 4A1 0.0206622
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0203617
ESYT2 extended synaptotagmin-like protein 2 0.0200237
SRP54 signal recognition particle 54kDa 0.0197654
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0197492
NDRG1 N-myc downstream regulated 1 0.019317
HM13 histocompatibility (minor) 13 0.0191884
GCLC glutamate-cysteine ligase, catalytic subunit 0.0183498
NALF1 NALCN channel auxiliary factor 1 0.0182496
TINAGL1 tubulointerstitial nephritis antigen-like 1 0.0172034
KIAA1217 KIAA1217 0.0171938
SEL1L sel-1 suppressor of lin-12-like (C. elegans) 0.0171773
EPAS1 endothelial PAS domain protein 1 0.017136
ERN1 endoplasmic reticulum to nucleus signaling 1 0.0165366
EGLN3 egl-9 family hypoxia-inducible factor 3 0.0164356
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy 0.0162216
LCN2 lipocalin 2 0.0157882
BAG6 BCL2-associated athanogene 6 0.0155206
FAT1 FAT atypical cadherin 1 0.015366
NRG1 neuregulin 1 0.0152628
SEC24D SEC24 family member D 0.0151869
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.0150555
ZSWIM6 zinc finger, SWIM-type containing 6 0.0149755
DOCK5 dedicator of cytokinesis 5 0.0149709
LAMA5 laminin, alpha 5 0.0145827
TIMP2 TIMP metallopeptidase inhibitor 2 0.0144025
PER2 period circadian clock 2 0.0141962
ZMIZ1 zinc finger, MIZ-type containing 1 0.0141319
CMIP c-Maf inducing protein 0.0140942
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 0.0140125
NAV2 neuron navigator 2 0.0138288
RNF149 ring finger protein 149 0.013696
PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 0.0135346
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0134741
ANXA1 annexin A1 0.0132468
COPA coatomer protein complex, subunit alpha 0.0132298
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0132163
CD68 CD68 molecule 0.013171
SEC23A Sec23 homolog A (S. cerevisiae) 0.0130631
MCL1 myeloid cell leukemia 1 0.0129466
ZFYVE28 zinc finger, FYVE domain containing 28 0.0128688
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 0.0127364
LRRC49 leucine rich repeat containing 49 0.0126609
KANSL1 KAT8 regulatory NSL complex subunit 1 0.0126361
NGLY1 N-glycanase 1 0.012494
NFE2L1 nuclear factor, erythroid 2-like 1 0.0124933
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0124774
CLDN4 claudin 4 0.0124499
ZNF185 zinc finger protein 185 (LIM domain) 0.0124006
STT3A STT3A, subunit of the oligosaccharyltransferase complex (catalytic) 0.0123308
RARA retinoic acid receptor, alpha 0.0122291
HIP1 huntingtin interacting protein 1 0.0121323
LOXL2 lysyl oxidase-like 2 0.0118867
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 0.0118689
C3 complement component 3 0.0117847
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 0.0117768
ANO10 anoctamin 10 0.0117603
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.0116295
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0116167
FRY furry homolog (Drosophila) 0.0116058
ZNRF1 zinc and ring finger 1, E3 ubiquitin protein ligase 0.0114084
NCOR2 nuclear receptor corepressor 2 0.0112864
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 0.0112417
C1D C1D nuclear receptor corepressor 0.0110404
KIRREL1 kirre like nephrin family adhesion molecule 1 0.0109793
PGM3 phosphoglucomutase 3 0.0109248
LINGO2 leucine rich repeat and Ig domain containing 2 0.0109064
HKDC1 hexokinase domain containing 1 0.0108892
KIAA1671 KIAA1671 0.0108549
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 0.0107957
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 0.0107227
CFB complement factor B 0.010709

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.191597
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.185959
PTMA prothymosin, alpha -0.16082
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.133073
TMSB4X thymosin beta 4, X-linked -0.106878
MMP7 matrix metallopeptidase 7 -0.106146
EIF1 eukaryotic translation initiation factor 1 -0.103591
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.100812
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0889142
LAMC2 laminin, gamma 2 -0.0861256
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0850885
B2M beta-2-microglobulin -0.0846192
ARHGAP26 Rho GTPase activating protein 26 -0.0822227
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0770676
RPL19 ribosomal protein L19 -0.0734952
CD2AP CD2-associated protein -0.0731223
PGK1 phosphoglycerate kinase 1 -0.0712862
ASPH aspartate beta-hydroxylase -0.070428
TMSB10 thymosin beta 10 -0.0694216
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0684221
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0681155
VCL vinculin -0.0678084
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0661397
HLA-B major histocompatibility complex, class I, B -0.0658823
MT1X metallothionein 1X -0.0657385
CTNND1 catenin (cadherin-associated protein), delta 1 -0.0650789
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0646062
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.060438
ARHGAP5 Rho GTPase activating protein 5 -0.0599531
DST dystonin -0.0599154
TPT1 tumor protein, translationally-controlled 1 -0.0588428
AHNAK AHNAK nucleoprotein -0.0580413
ACTG1 actin gamma 1 -0.0577622
AKAP13 A kinase (PRKA) anchor protein 13 -0.0566721
TM4SF1 transmembrane 4 L six family member 1 -0.0566159
SLC38A1 solute carrier family 38, member 1 -0.0563399
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0552729
STRN3 striatin, calmodulin binding protein 3 -0.0544143
UBC ubiquitin C -0.0535958
STAT1 signal transducer and activator of transcription 1, 91kDa -0.053335
TRIO trio Rho guanine nucleotide exchange factor -0.0531022
RPL23 ribosomal protein L23 -0.052888
APP amyloid beta (A4) precursor protein -0.0526281
RPS2 ribosomal protein S2 -0.0514779
ALCAM activated leukocyte cell adhesion molecule -0.050808
PLAU plasminogen activator, urokinase -0.0504695
RPS8 ribosomal protein S8 -0.0501866
NPEPPS aminopeptidase puromycin sensitive -0.0501129
RPS6 ribosomal protein S6 -0.0498681
EHBP1 EH domain binding protein 1 -0.0493658
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0492434
PLAUR plasminogen activator, urokinase receptor -0.0484323
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0480965
TPM1 tropomyosin 1 (alpha) -0.0475098
RPS24 ribosomal protein S24 -0.0470113
RPS3 ribosomal protein S3 -0.0467074
RTN4 reticulon 4 -0.0459668
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0456794
RPL11 ribosomal protein L11 -0.0451508
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0441403
DSG2 desmoglein 2 -0.0436442
SPATS2L spermatogenesis associated, serine-rich 2-like -0.0435386
MYOF myoferlin -0.0432988
C15ORF48 chromosome 15 open reading frame 48 -0.042432
ANXA2 annexin A2 -0.0413601
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0413546
EPCAM epithelial cell adhesion molecule -0.0410228
MYH9 myosin, heavy chain 9, non-muscle -0.0410072
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0409071
ITPRID2 ITPR interacting domain containing 2 -0.0404529
NAMPT nicotinamide phosphoribosyltransferase -0.040043
PDLIM5 PDZ and LIM domain 5 -0.0398647
MACC1 metastasis associated in colon cancer 1 -0.0397646
RPLP1 ribosomal protein, large, P1 -0.0390963
ITGA6 integrin, alpha 6 -0.0388107
POTEF POTE ankyrin domain family, member F -0.0385186
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0383709
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0380785
RPS21 ribosomal protein S21 -0.0380198
RPS12 ribosomal protein S12 -0.0379502
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0376487
IER3 immediate early response 3 -0.0371357
VIM vimentin -0.0371276
LAMA4 laminin, alpha 4 -0.0369196
UBE2H ubiquitin-conjugating enzyme E2H -0.0367332
LAMB1 laminin, beta 1 -0.0366671
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0359296
PCDH7 protocadherin 7 -0.0354956
EREG epiregulin -0.0353763
RPS29 ribosomal protein S29 -0.0353361
RPL9 ribosomal protein L9 -0.035078
RPL37A ribosomal protein L37a -0.03483
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0345519
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0341587
MKI67 marker of proliferation Ki-67 -0.034136
ACTN4 actinin, alpha 4 -0.0340988
MBNL1 muscleblind-like splicing regulator 1 -0.033856
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0338278
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0338219
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0336227