Lipoic acid_HEC-1-A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in HEC-1-A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_HEC-1-A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.147823
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0910858
GOLGA4 golgin A4 0.0567633
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0524379
FNDC3B fibronectin type III domain containing 3B 0.0515786
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.046697
KDM6A lysine (K)-specific demethylase 6A 0.045095
MYH9 myosin, heavy chain 9, non-muscle 0.0443872
TTC3 tetratricopeptide repeat domain 3 0.0440596
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0435916
HELZ helicase with zinc finger 0.0423239
BBS9 Bardet-Biedl syndrome 9 0.0388436
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0386978
CLTC clathrin, heavy chain (Hc) 0.037419
MKI67 marker of proliferation Ki-67 0.0372448
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0352073
H1-0 H1.0 linker histone 0.0339251
GOLGB1 golgin B1 0.0335435
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0332441
TMF1 TATA element modulatory factor 1 0.0317976
SEC24D SEC24 family member D 0.0317606
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0310872
TJP1 tight junction protein 1 0.0309642
EEF2 eukaryotic translation elongation factor 2 0.030515
COG6 component of oligomeric golgi complex 6 0.0300573
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0299225
PCLO piccolo presynaptic cytomatrix protein 0.029796
ANKRD36 ankyrin repeat domain 36 0.0292883
TUSC3 tumor suppressor candidate 3 0.0289209
ZFAND3 zinc finger, AN1-type domain 3 0.0288533
H1-4 H1.4 linker histone, cluster member 0.0287737
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0283547
HDLBP high density lipoprotein binding protein 0.0280767
NRIP1 nuclear receptor interacting protein 1 0.0280283
PDIA5 protein disulfide isomerase family A, member 5 0.0280039
HYOU1 hypoxia up-regulated 1 0.0278351
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 0.0262357
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide 0.0260879
FNIP1 folliculin interacting protein 1 0.0259813
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0255943
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0255859
PHF3 PHD finger protein 3 0.0254465
NBAS neuroblastoma amplified sequence 0.0251863
APLP2 amyloid beta (A4) precursor-like protein 2 0.0251786
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0251696
SEC31A SEC31 homolog A (S. cerevisiae) 0.0251549
NIBAN1 niban apoptosis regulator 1 0.0250744
MYEOV myeloma overexpressed 0.0247107
PUM2 pumilio RNA-binding family member 2 0.0242474
SPAG9 sperm associated antigen 9 0.0241617
NIPBL Nipped-B homolog (Drosophila) 0.0241145
CLINT1 clathrin interactor 1 0.0240452
CAMTA1 calmodulin binding transcription activator 1 0.023964
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0239636
JMJD1C jumonji domain containing 1C 0.0239379
COPA coatomer protein complex, subunit alpha 0.0238482
ATXN7 ataxin 7 0.0235194
MON2 MON2 homolog (S. cerevisiae) 0.0232935
NBEA neurobeachin 0.022853
TMEM39A transmembrane protein 39A 0.0224836
VGLL4 vestigial-like family member 4 0.0224029
CDK5RAP2 CDK5 regulatory subunit associated protein 2 0.022324
NUP58 nucleoporin 58 0.0221633
RNF145 ring finger protein 145 0.021968
FTH1 ferritin, heavy polypeptide 1 0.0219266
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 0.0218712
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 0.0218079
RANBP2 RAN binding protein 2 0.0218078
SETD2 SET domain containing 2 0.0217314
SNX9 sorting nexin 9 0.021527
CANX calnexin 0.0214734
PGM3 phosphoglucomutase 3 0.0214692
TBL1X transducin (beta)-like 1X-linked 0.0213494
LARP1B La ribonucleoprotein domain family, member 1B 0.0212426
WAC WW domain containing adaptor with coiled-coil 0.0209954
ARID1A AT rich interactive domain 1A (SWI-like) 0.0209867
CREB3L2 cAMP responsive element binding protein 3-like 2 0.0209507
BRD2 bromodomain containing 2 0.0206678
TGFA transforming growth factor, alpha 0.0206323
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0205733
LMAN1 lectin, mannose-binding, 1 0.0205569
CKAP5 cytoskeleton associated protein 5 0.0205264
LCOR ligand dependent nuclear receptor corepressor 0.020351
GARS1 glycyl-tRNA synthetase 1 0.0203509
PCM1 pericentriolar material 1 0.0202375
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.0201895
INTS6 integrator complex subunit 6 0.0201729
SETD5 SET domain containing 5 0.0200616
CALR calreticulin 0.0199666
HSPA8 heat shock 70kDa protein 8 0.0198896
IARS1 isoleucyl-tRNA synthetase 1 0.0198708
TRA2B transformer 2 beta homolog (Drosophila) 0.0197553
CCDC138 coiled-coil domain containing 138 0.0197232
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.0196354
BBX bobby sox homolog (Drosophila) 0.0194821
PDIA4 protein disulfide isomerase family A, member 4 0.0194637
ARF4 ADP-ribosylation factor 4 0.0194071
TXNRD1 thioredoxin reductase 1 0.0193872
SRRM2 serine/arginine repetitive matrix 2 0.0193154
AFDN afadin, adherens junction formation factor 0.019301

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.144139
PTMA prothymosin, alpha -0.124744
ACTG1 actin gamma 1 -0.120189
TPT1 tumor protein, translationally-controlled 1 -0.113453
RPL35A ribosomal protein L35a -0.0980409
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.097437
MT2A metallothionein 2A -0.0885111
PSD3 pleckstrin and Sec7 domain containing 3 -0.0867619
ASPH aspartate beta-hydroxylase -0.0824217
FTL ferritin, light polypeptide -0.0809068
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0780029
HMGA2 high mobility group AT-hook 2 -0.0747025
RPS8 ribosomal protein S8 -0.0731841
SIPA1L3 signal-induced proliferation-associated 1 like 3 -0.072339
RPS6 ribosomal protein S6 -0.0717367
AHNAK AHNAK nucleoprotein -0.0691685
TPM4 tropomyosin 4 -0.0674278
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0643178
NDRG1 N-myc downstream regulated 1 -0.0633459
ALCAM activated leukocyte cell adhesion molecule -0.0632346
CD44 CD44 molecule (Indian blood group) -0.059965
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0595733
RPL31 ribosomal protein L31 -0.057863
RPS24 ribosomal protein S24 -0.0575668
RPL23 ribosomal protein L23 -0.0574767
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0571538
RPL9 ribosomal protein L9 -0.0569049
DLC1 DLC1 Rho GTPase activating protein -0.0558248
HMGA1 high mobility group AT-hook 1 -0.0539819
S100A10 S100 calcium binding protein A10 -0.0509707
RPL34 ribosomal protein L34 -0.0501361
LAMA4 laminin, alpha 4 -0.049161
RHEX regulator of hemoglobinization and erythroid cell expansion -0.0490608
RPL12 ribosomal protein L12 -0.0482153
RPL11 ribosomal protein L11 -0.0464299
VCL vinculin -0.0463478
LAMB3 laminin, beta 3 -0.0452722
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0450575
KRT7 keratin 7, type II -0.0446188
TMSB4X thymosin beta 4, X-linked -0.044557
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0445513
PCED1B PC-esterase domain containing 1B -0.044367
RPS27A ribosomal protein S27a -0.0427065
RPL37A ribosomal protein L37a -0.0426557
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0424935
RPS12 ribosomal protein S12 -0.0424729
DSCAML1 Down syndrome cell adhesion molecule like 1 -0.0423322
FLNA filamin A, alpha -0.0417855
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0404438
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.039349
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0392972
LIMCH1 LIM and calponin homology domains 1 -0.0388651
EGFR epidermal growth factor receptor -0.0387041
RPL7A ribosomal protein L7a -0.0385948
RPL37 ribosomal protein L37 -0.0380591
IGFBP3 insulin-like growth factor binding protein 3 -0.0379472
CCND1 cyclin D1 -0.0374508
RPS29 ribosomal protein S29 -0.0373718
RPS19 ribosomal protein S19 -0.0372372
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0368171
VDAC1 voltage-dependent anion channel 1 -0.0365925
ITGA6 integrin, alpha 6 -0.036263
ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 -0.0352091
EMP1 epithelial membrane protein 1 -0.035125
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0350162
BICD1 bicaudal D homolog 1 (Drosophila) -0.0338051
RPL26 ribosomal protein L26 -0.0331914
RPS17 ribosomal protein S17 -0.0328019
RPLP2 ribosomal protein, large, P2 -0.0327951
PAX8 paired box 8 -0.0326346
RPS25 ribosomal protein S25 -0.0326253
ATG7 autophagy related 7 -0.032625
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0325278
RPL19 ribosomal protein L19 -0.0324849
LAMC2 laminin, gamma 2 -0.0322628
CAPN2 calpain 2, (m/II) large subunit -0.0322488
SEPTIN7 septin 7 -0.0321392
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0319872
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0319724
RPS3 ribosomal protein S3 -0.0308539
SH3TC2 SH3 domain and tetratricopeptide repeats 2 -0.0307588
RPS14 ribosomal protein S14 -0.0303631
KRT19 keratin 19, type I -0.0303038
HMGB1 high mobility group box 1 -0.0300993
LPP LIM domain containing preferred translocation partner in lipoma -0.0299776
RPS11 ribosomal protein S11 -0.0292945
TM4SF1 transmembrane 4 L six family member 1 -0.0292916
RPLP1 ribosomal protein, large, P1 -0.0292887
RPL5 ribosomal protein L5 -0.0291869
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0291861
S100A6 S100 calcium binding protein A6 -0.0289896
RPS13 ribosomal protein S13 -0.0289648
EIF5B eukaryotic translation initiation factor 5B -0.0287281
RPL38 ribosomal protein L38 -0.0286393
CLDN1 claudin 1 -0.028504
DIAPH2 diaphanous-related formin 2 -0.0277954
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0277763
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0276327
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0275816
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0274015