Lipoic acid_NCI-H1792 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in NCI-H1792 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_NCI-H1792 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.197405
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.14923
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.116567
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.108885
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.107031
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.0935413
CD44 CD44 molecule (Indian blood group) 0.0862278
NAV2 neuron navigator 2 0.076797
HIPK2 homeodomain interacting protein kinase 2 0.0725167
IGFBP3 insulin-like growth factor binding protein 3 0.0683671
GRB10 growth factor receptor-bound protein 10 0.0677742
VIM vimentin 0.0675181
SMAD3 SMAD family member 3 0.0615342
TGM2 transglutaminase 2 0.0580891
ANKRD28 ankyrin repeat domain 28 0.0569634
LOX lysyl oxidase 0.0567991
RHCG Rh family, C glycoprotein 0.0528428
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0518258
ZBTB38 zinc finger and BTB domain containing 38 0.0510661
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0504917
FTH1 ferritin, heavy polypeptide 1 0.0489019
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0484755
LDHA lactate dehydrogenase A 0.0476968
EHBP1 EH domain binding protein 1 0.0465677
VEGFA vascular endothelial growth factor A 0.045984
ZC3H12C zinc finger CCCH-type containing 12C 0.0453607
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0452854
GAREM1 GRB2 associated regulator of MAPK1 subtype 1 0.0451965
LOXL2 lysyl oxidase-like 2 0.0451021
NTN4 netrin 4 0.0434966
UTRN utrophin 0.0425948
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0415055
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0414085
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0414043
LHFPL2 lipoma HMGIC fusion partner-like 2 0.041215
FN1 fibronectin 1 0.0406189
FER fer (fps/fes related) tyrosine kinase 0.0403464
RFFL ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 0.0400903
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0381011
EEF2 eukaryotic translation elongation factor 2 0.0374036
IL1R1 interleukin 1 receptor, type I 0.0368894
BACE2 beta-site APP-cleaving enzyme 2 0.0367591
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0361684
MYO10 myosin X 0.035742
OPTN optineurin 0.035225
ECE1 endothelin converting enzyme 1 0.0347581
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0347255
IRAK2 interleukin-1 receptor-associated kinase 2 0.0347247
ZEB2 zinc finger E-box binding homeobox 2 0.0342389
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0333477
SYAP1 synapse associated protein 1 0.0328742
B2M beta-2-microglobulin 0.0326423
AKAP9 A kinase (PRKA) anchor protein 9 0.0324485
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0323888
MACF1 microtubule-actin crosslinking factor 1 0.0321313
KIAA1217 KIAA1217 0.0312464
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0309904
KSR1 kinase suppressor of ras 1 0.0309377
RAD51B RAD51 paralog B 0.0306256
CADPS2 Ca++-dependent secretion activator 2 0.0305311
DOCK4 dedicator of cytokinesis 4 0.0304702
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0302674
FAM107B family with sequence similarity 107, member B 0.0300258
HDAC9 histone deacetylase 9 0.0292006
SRRM2 serine/arginine repetitive matrix 2 0.0285445
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 0.0285419
CEP250 centrosomal protein 250kDa 0.0284713
TNIP1 TNFAIP3 interacting protein 1 0.0279506
NCOR2 nuclear receptor corepressor 2 0.0272343
ARHGAP26 Rho GTPase activating protein 26 0.0268982
AHI1 Abelson helper integration site 1 0.0267453
EGFR epidermal growth factor receptor 0.0265059
PMEPA1 prostate transmembrane protein, androgen induced 1 0.0263898
GFPT2 glutamine-fructose-6-phosphate transaminase 2 0.0263865
ATF7 activating transcription factor 7 0.0260144
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.02601
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0259657
SH3KBP1 SH3-domain kinase binding protein 1 0.0259467
MIPOL1 mirror-image polydactyly 1 0.0248768
IL6ST interleukin 6 signal transducer 0.0247423
ANGPTL4 angiopoietin-like 4 0.0242784
RND3 Rho family GTPase 3 0.0242559
SFTPA2 surfactant protein A2 0.0241832
VEGFC vascular endothelial growth factor C 0.0240396
SVIL supervillin 0.0239764
SEPTIN9 septin 9 0.0239196
NFE2L1 nuclear factor, erythroid 2-like 1 0.0234071
LGALS12 lectin, galactoside-binding, soluble, 12 0.0230645
LRRC49 leucine rich repeat containing 49 0.0230057
ANKRD36 ankyrin repeat domain 36 0.0229122
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0228965
KYNU kynureninase 0.022823
PODXL podocalyxin-like 0.022706
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0226369
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0225758
BIRC3 baculoviral IAP repeat containing 3 0.0223872
DST dystonin 0.02203
WWOX WW domain containing oxidoreductase 0.0220257
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0219051
DNMBP dynamin binding protein 0.021844

decreased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific -0.266311
SDK1 sidekick cell adhesion molecule 1 -0.179059
NAMPT nicotinamide phosphoribosyltransferase -0.143486
TMSB10 thymosin beta 10 -0.135877
GPC6 glypican 6 -0.131978
PSD3 pleckstrin and Sec7 domain containing 3 -0.0783679
CDH13 cadherin 13 -0.075731
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0739489
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0728033
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0723332
USP34 ubiquitin specific peptidase 34 -0.071979
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0696446
DPYD dihydropyrimidine dehydrogenase -0.0695703
KMT2C lysine (K)-specific methyltransferase 2C -0.0636321
GLCCI1 glucocorticoid induced 1 -0.0619211
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0617154
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0610914
FTL ferritin, light polypeptide -0.0599698
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0583238
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0577671
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.0566237
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0565476
DDIT3 DNA-damage-inducible transcript 3 -0.0546222
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0534511
NPC1 Niemann-Pick disease, type C1 -0.0529155
NCOA7 nuclear receptor coactivator 7 -0.0525851
MECOM MDS1 and EVI1 complex locus -0.0522773
HMGA2 high mobility group AT-hook 2 -0.0514217
TPT1 tumor protein, translationally-controlled 1 -0.0494602
CDK14 cyclin-dependent kinase 14 -0.0490431
PRELID2 PRELI domain containing 2 -0.0484886
FAM20C family with sequence similarity 20, member C -0.0484806
OGA O-GlcNAcase -0.0483467
MTSS1 metastasis suppressor 1 -0.0471083
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0442694
ZNF804A zinc finger protein 804A -0.0434343
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0426639
TAS2R14 taste receptor, type 2, member 14 -0.0419196
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0409444
RBM39 RNA binding motif protein 39 -0.0405648
MT2A metallothionein 2A -0.0404177
ETV6 ets variant 6 -0.0396192
BIRC6 baculoviral IAP repeat containing 6 -0.0391919
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0391269
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0376285
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0373443
IER3 immediate early response 3 -0.0369321
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0357801
TBC1D22A TBC1 domain family, member 22A -0.0352004
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0346586
OSMR oncostatin M receptor -0.0342965
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) -0.0340989
NLK nemo-like kinase -0.0336034
ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) -0.0335411
HDAC4 histone deacetylase 4 -0.0332086
DIAPH2 diaphanous-related formin 2 -0.0331464
VCL vinculin -0.0330749
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -0.0329877
NEK7 NIMA-related kinase 7 -0.0329654
SETD5 SET domain containing 5 -0.032946
ANK3 ankyrin 3, node of Ranvier (ankyrin G) -0.0325345
DLG1 discs, large homolog 1 (Drosophila) -0.032405
CUX1 cut-like homeobox 1 -0.0322622
MSRB3 methionine sulfoxide reductase B3 -0.0322195
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0321451
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0319701
GNAS GNAS complex locus -0.0318552
MRPS6 mitochondrial ribosomal protein S6 -0.0318342
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0314595
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0309816
COL7A1 collagen, type VII, alpha 1 -0.0305893
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0305533
CFAP20DC CFAP20 domain containing -0.0303908
PTMA prothymosin, alpha -0.0303534
COL12A1 collagen, type XII, alpha 1 -0.0302953
RBMS1 RNA binding motif, single stranded interacting protein 1 -0.030237
ANKRD12 ankyrin repeat domain 12 -0.0301093
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0299709
PRRC2C proline-rich coiled-coil 2C -0.0293415
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0289963
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0289146
NPEPPS aminopeptidase puromycin sensitive -0.0288639
C15ORF48 chromosome 15 open reading frame 48 -0.0283711
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0282112
TRPS1 trichorhinophalangeal syndrome I -0.027934
EFCAB13 EF-hand calcium binding domain 13 -0.0278411
NRG1 neuregulin 1 -0.0277091
SOX4 SRY (sex determining region Y)-box 4 -0.0274742
TMEM263 transmembrane protein 263 -0.0272646
ELF2 E74-like factor 2 (ets domain transcription factor) -0.0270821
NF1 neurofibromin 1 -0.0270534
CAMK1D calcium/calmodulin-dependent protein kinase ID -0.0269598
PTGIS prostaglandin I2 (prostacyclin) synthase -0.0268669
RPS21 ribosomal protein S21 -0.0267532
MMP14 matrix metallopeptidase 14 (membrane-inserted) -0.0262632
SSBP2 single-stranded DNA binding protein 2 -0.0258303
SOS2 son of sevenless homolog 2 (Drosophila) -0.0257592
FOXP1 forkhead box P1 -0.0256205
MARCHF6 membrane associated ring-CH-type finger 6 -0.0255844
STC1 stanniocalcin 1 -0.0255471