Lipoic acid_NCI-H2122 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in NCI-H2122 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_NCI-H2122 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific 0.171634
KYNU kynureninase 0.152531
DOCK4 dedicator of cytokinesis 4 0.0751212
BACE2 beta-site APP-cleaving enzyme 2 0.0738972
TJP1 tight junction protein 1 0.0725184
ANXA2 annexin A2 0.0631153
PRKCA protein kinase C, alpha 0.0605015
GPC6 glypican 6 0.06024
BTBD9 BTB (POZ) domain containing 9 0.0589319
AKAP13 A kinase (PRKA) anchor protein 13 0.0575839
IGF1R insulin-like growth factor 1 receptor 0.0547177
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0522886
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0512871
EZR ezrin 0.0494134
MYO5B myosin VB 0.0492876
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0489061
SETX senataxin 0.0483495
PARD3 par-3 family cell polarity regulator 0.0474906
VMP1 vacuole membrane protein 1 0.0464465
MAST4 microtubule associated serine/threonine kinase family member 4 0.0463621
TCF12 transcription factor 12 0.0454002
RSAD2 radical S-adenosyl methionine domain containing 2 0.044856
INTS6 integrator complex subunit 6 0.0443694
RAD51B RAD51 paralog B 0.0443554
TXNRD1 thioredoxin reductase 1 0.0439445
ADAM10 ADAM metallopeptidase domain 10 0.0438698
ATP11A ATPase, class VI, type 11A 0.0421819
HOMER1 homer scaffolding protein 1 0.0418243
ARHGAP21 Rho GTPase activating protein 21 0.0416152
BRIP1 BRCA1 interacting protein C-terminal helicase 1 0.0404179
ERRFI1 ERBB receptor feedback inhibitor 1 0.040061
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 0.0398316
LMO7 LIM domain 7 0.0396022
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0391187
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0386853
GOLGB1 golgin B1 0.0379788
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 0.0374311
BMAL2 basic helix-loop-helix ARNT like 2 0.0373562
GATAD2B GATA zinc finger domain containing 2B 0.0369911
MUC16 mucin 16, cell surface associated 0.0367631
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.036677
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.036183
MYO1E myosin IE 0.0357048
RALGAPB Ral GTPase activating protein, beta subunit (non-catalytic) 0.0356197
CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 0.0354772
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0349225
ENO1 enolase 1, (alpha) 0.034207
NCOA3 nuclear receptor coactivator 3 0.0338
PARP4 poly (ADP-ribose) polymerase family, member 4 0.03369
RNF145 ring finger protein 145 0.0334864
EP300 E1A binding protein p300 0.0332918
STX18 syntaxin 18 0.0331606
SON SON DNA binding protein 0.0329233
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0326018
STC1 stanniocalcin 1 0.0323955
ELOF1 elongation factor 1 homolog (S. cerevisiae) 0.0321431
ANXA11 annexin A11 0.0316898
MCTP1 multiple C2 domains, transmembrane 1 0.0316121
BMPR1A bone morphogenetic protein receptor, type IA 0.0315438
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 0.0315435
MPRIP myosin phosphatase Rho interacting protein 0.0314765
OSMR oncostatin M receptor 0.0314599
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 0.0312293
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0312074
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.0311215
MCU mitochondrial calcium uniporter 0.0310442
ZMYM2 zinc finger, MYM-type 2 0.0307862
TBC1D15 TBC1 domain family, member 15 0.0302917
DOCK7 dedicator of cytokinesis 7 0.0302232
FER fer (fps/fes related) tyrosine kinase 0.0301914
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0301585
PTPRK protein tyrosine phosphatase, receptor type, K 0.0300391
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0299902
MAP7 microtubule-associated protein 7 0.0298395
NRG1 neuregulin 1 0.0297375
SLK STE20-like kinase 0.0294486
NAMPT nicotinamide phosphoribosyltransferase 0.029136
ARL5B ADP-ribosylation factor-like 5B 0.0288944
ARL8B ADP-ribosylation factor-like 8B 0.0288265
ANKHD1 ankyrin repeat and KH domain containing 1 0.0288257
TMCC3 transmembrane and coiled-coil domain family 3 0.0286037
SRP54 signal recognition particle 54kDa 0.0285476
PRRC2C proline-rich coiled-coil 2C 0.028194
KDM4C lysine (K)-specific demethylase 4C 0.0281521
PTPRM protein tyrosine phosphatase, receptor type, M 0.0280618
MACC1 metastasis associated in colon cancer 1 0.0280116
PATJ PATJ crumbs cell polarity complex component 0.0278107
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 0.0276436
CDC73 cell division cycle 73 0.0275475
MSN moesin 0.027547
ETV6 ets variant 6 0.0272547
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0271959
GSK3B glycogen synthase kinase 3 beta 0.0271728
AHR aryl hydrocarbon receptor 0.027138
DCAF7 DDB1 and CUL4 associated factor 7 0.0270475
PDLIM5 PDZ and LIM domain 5 0.0269895
UBA2 ubiquitin-like modifier activating enzyme 2 0.0269284
COPA coatomer protein complex, subunit alpha 0.0268339
ZBTB20 zinc finger and BTB domain containing 20 0.0267526
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0266587

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.15168
FTL ferritin, light polypeptide -0.139113
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.101127
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 -0.0873019
RPL35A ribosomal protein L35a -0.0836491
GRB10 growth factor receptor-bound protein 10 -0.0797366
ATOSA atos homolog A -0.0777099
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.0737137
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0715827
TMSB10 thymosin beta 10 -0.0695101
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0665278
MXD1 MAX dimerization protein 1 -0.0607035
WSB1 WD repeat and SOCS box containing 1 -0.060559
FAM13A family with sequence similarity 13, member A -0.0597806
FTH1 ferritin, heavy polypeptide 1 -0.0592385
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0577098
PTMA prothymosin, alpha -0.0563534
RPL26 ribosomal protein L26 -0.0562858
CEMIP cell migration inducing protein, hyaluronan binding -0.0517455
SQSTM1 sequestosome 1 -0.049809
IGFBP3 insulin-like growth factor binding protein 3 -0.0494246
SRPK2 SRSF protein kinase 2 -0.0492941
PKM pyruvate kinase, muscle -0.0491939
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0487299
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0483225
CD2AP CD2-associated protein -0.0480792
LGALS3 lectin, galactoside-binding, soluble, 3 -0.0479883
NPTN neuroplastin -0.0456513
ZMYND8 zinc finger, MYND-type containing 8 -0.0452261
ZFAND3 zinc finger, AN1-type domain 3 -0.0451711
XPO1 exportin 1 -0.0437038
RIOK3 RIO kinase 3 -0.043058
RPLP1 ribosomal protein, large, P1 -0.0429745
PDE8A phosphodiesterase 8A -0.0428762
UBE2H ubiquitin-conjugating enzyme E2H -0.042857
RPL38 ribosomal protein L38 -0.0427777
RPL23 ribosomal protein L23 -0.0426704
PTK2 protein tyrosine kinase 2 -0.0419308
LASP1 LIM and SH3 protein 1 -0.0416769
SOX4 SRY (sex determining region Y)-box 4 -0.0409361
MTUS1 microtubule associated tumor suppressor 1 -0.0408199
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0400507
ZNF638 zinc finger protein 638 -0.0394401
FLNB filamin B, beta -0.0391269
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 -0.0382704
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0382698
TAOK3 TAO kinase 3 -0.0381313
TPT1 tumor protein, translationally-controlled 1 -0.0378781
HMGA2 high mobility group AT-hook 2 -0.0377893
PICALM phosphatidylinositol binding clathrin assembly protein -0.037442
RAB6A RAB6A, member RAS oncogene family -0.0369624
PPP1R15A protein phosphatase 1, regulatory subunit 15A -0.0369032
TMEM165 transmembrane protein 165 -0.0366237
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 -0.0364789
AKAP12 A kinase (PRKA) anchor protein 12 -0.0362859
RSF1 remodeling and spacing factor 1 -0.0362482
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0360511
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) -0.035815
KANSL1 KAT8 regulatory NSL complex subunit 1 -0.0357791
ATF6 activating transcription factor 6 -0.035694
TXNIP thioredoxin interacting protein -0.035481
FMNL2 formin-like 2 -0.0353393
TLK1 tousled-like kinase 1 -0.0348035
ADM adrenomedullin -0.0347089
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0342504
RAB1A RAB1A, member RAS oncogene family -0.0332799
ATP13A3 ATPase type 13A3 -0.0332788
RPS8 ribosomal protein S8 -0.0323622
HDLBP high density lipoprotein binding protein -0.0321435
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0318517
RPL37A ribosomal protein L37a -0.0317988
RPS19 ribosomal protein S19 -0.0317545
RAI14 retinoic acid induced 14 -0.0314493
MMP1 matrix metallopeptidase 1 -0.0314254
F3 coagulation factor III (thromboplastin, tissue factor) -0.0314124
RPL18 ribosomal protein L18 -0.0312501
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0311486
S100A11 S100 calcium binding protein A11 -0.0311242
MBOAT2 membrane bound O-acyltransferase domain containing 2 -0.0306975
RPL5 ribosomal protein L5 -0.0302051
ANTXR2 anthrax toxin receptor 2 -0.0300807
RPS29 ribosomal protein S29 -0.0292777
NAP1L4 nucleosome assembly protein 1-like 4 -0.0288674
UBR4 ubiquitin protein ligase E3 component n-recognin 4 -0.0283494
RBM25 RNA binding motif protein 25 -0.0281414
RPS27A ribosomal protein S27a -0.0277717
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0277368
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0277087
B2M beta-2-microglobulin -0.0275902
LOC112694756 uncharaterized LOC112694756 -0.0275537
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0275428
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0275349
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0275062
TMOD3 tropomodulin 3 (ubiquitous) -0.0273329
CDK17 cyclin-dependent kinase 17 -0.0272131
EXT1 exostosin glycosyltransferase 1 -0.0270634
IER3 immediate early response 3 -0.0270267
S100A6 S100 calcium binding protein A6 -0.0270123
RPS12 ribosomal protein S12 -0.0269223
RPS6 ribosomal protein S6 -0.0268748