Lipoic acid_PANC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lipoic acid perturbation in PANC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lipoic acid_PANC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ZFP36 ZFP36 ring finger protein 0.128766
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.080118
APLP2 amyloid beta (A4) precursor-like protein 2 0.0780945
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0756467
AKT2 v-akt murine thymoma viral oncogene homolog 2 0.072538
ANKRD11 ankyrin repeat domain 11 0.0708668
FNDC3B fibronectin type III domain containing 3B 0.0684682
RPS12 ribosomal protein S12 0.0653692
KTN1 kinectin 1 (kinesin receptor) 0.0646155
PCBP2 poly(rC) binding protein 2 0.0627166
ASPH aspartate beta-hydroxylase 0.0618075
RPS2 ribosomal protein S2 0.0573884
YBX1 Y box binding protein 1 0.0567541
RPS3 ribosomal protein S3 0.054692
SEPTIN9 septin 9 0.0535829
SAMD4B sterile alpha motif domain containing 4B 0.0528697
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0489541
MT2A metallothionein 2A 0.0489136
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0488259
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0483689
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0480287
AKAP12 A kinase (PRKA) anchor protein 12 0.0456829
BRD2 bromodomain containing 2 0.0437112
JMJD1C jumonji domain containing 1C 0.0433997
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0416829
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0413939
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0402044
RPS8 ribosomal protein S8 0.0392838
MSN moesin 0.0384968
WWTR1 WW domain containing transcription regulator 1 0.0374074
VEGFA vascular endothelial growth factor A 0.0370205
TPM3 tropomyosin 3 0.0367901
NCOR2 nuclear receptor corepressor 2 0.0359094
SET SET nuclear proto-oncogene 0.0358882
SLK STE20-like kinase 0.0351946
LDHA lactate dehydrogenase A 0.0347603
CENPF centromere protein F, 350/400kDa 0.034385
FTH1 ferritin, heavy polypeptide 1 0.0341601
SFPQ splicing factor proline/glutamine-rich 0.034048
EEF1G eukaryotic translation elongation factor 1 gamma 0.0331823
VMP1 vacuole membrane protein 1 0.0331775
EGR1 early growth response 1 0.0331134
FTL ferritin, light polypeptide 0.0321569
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0321407
RPL37A ribosomal protein L37a 0.0316989
NFE2L1 nuclear factor, erythroid 2-like 1 0.0312579
B2M beta-2-microglobulin 0.0311502
CCDC88A coiled-coil domain containing 88A 0.0311023
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0305781
FOSL1 FOS-like antigen 1 0.0303267
MYH9 myosin, heavy chain 9, non-muscle 0.030214
RTN4 reticulon 4 0.0301149
EEF2 eukaryotic translation elongation factor 2 0.0294477
CSNK1A1 casein kinase 1, alpha 1 0.0290328
ZNF146 zinc finger protein 146 0.0285253
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.028283
PTEN phosphatase and tensin homolog 0.0282287
RPS6 ribosomal protein S6 0.0280663
STAT1 signal transducer and activator of transcription 1, 91kDa 0.027164
BIRC2 baculoviral IAP repeat containing 2 0.0270277
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0269344
RPS4X ribosomal protein S4, X-linked 0.0267894
ZSWIM6 zinc finger, SWIM-type containing 6 0.026786
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0267645
HDAC9 histone deacetylase 9 0.0265995
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0262049
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0260356
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.026033
TXNRD1 thioredoxin reductase 1 0.0260036
SESN2 sestrin 2 0.0254959
RPS17 ribosomal protein S17 0.0254423
STC2 stanniocalcin 2 0.0253791
NRDC nardilysin convertase 0.0253641
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0253188
ERBIN erbb2 interacting protein 0.0252993
BAG6 BCL2-associated athanogene 6 0.0250037
ITGAV integrin, alpha V 0.0247387
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0245238
WNK1 WNK lysine deficient protein kinase 1 0.0240942
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0239807
POTEF POTE ankyrin domain family, member F 0.0238421
MYADM myeloid-associated differentiation marker 0.0237282
UTRN utrophin 0.0236418
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0231919
GOLGB1 golgin B1 0.0229556
RPL21 ribosomal protein L21 0.0227143
L1CAM L1 cell adhesion molecule 0.0226555
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.022612
DSCAM Down syndrome cell adhesion molecule 0.0225449
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.0220651
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0219339
OPTN optineurin 0.0216967
PTK2 protein tyrosine kinase 2 0.0216842
SRRM2 serine/arginine repetitive matrix 2 0.0216379
NCKAP1 NCK-associated protein 1 0.0215724
AKAP13 A kinase (PRKA) anchor protein 13 0.0215149
FXR1 fragile X mental retardation, autosomal homolog 1 0.0212711
RPL9 ribosomal protein L9 0.0211178
MAP3K10 mitogen-activated protein kinase kinase kinase 10 0.0210457
RPL3 ribosomal protein L3 0.0209194

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.201877
AHNAK AHNAK nucleoprotein -0.200429
RPS16 ribosomal protein S16 -0.175335
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.148044
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.111648
TMSB10 thymosin beta 10 -0.0950368
SLC35F3 solute carrier family 35, member F3 -0.0928695
TRIO trio Rho guanine nucleotide exchange factor -0.0925323
ACTN4 actinin, alpha 4 -0.0852177
PTMA prothymosin, alpha -0.0810769
CD44 CD44 molecule (Indian blood group) -0.0674562
TMEM123 transmembrane protein 123 -0.0653369
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0601508
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.059945
LOC112694756 uncharaterized LOC112694756 -0.0594381
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0552415
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0543436
PGK1 phosphoglycerate kinase 1 -0.0519667
CANX calnexin -0.0516285
PSMC4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 -0.0478848
ACTG1 actin gamma 1 -0.0435178
EGFR epidermal growth factor receptor -0.0403296
ATG7 autophagy related 7 -0.0393504
RPS24 ribosomal protein S24 -0.0378786
THSD4 thrombospondin, type I, domain containing 4 -0.037763
MORF4L2 mortality factor 4 like 2 -0.0370964
S100A6 S100 calcium binding protein A6 -0.0368209
RPL4 ribosomal protein L4 -0.0353613
UBASH3B ubiquitin associated and SH3 domain containing B -0.0351478
APP amyloid beta (A4) precursor protein -0.0347783
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0341117
MYOF myoferlin -0.0340031
EHBP1 EH domain binding protein 1 -0.0338863
HDLBP high density lipoprotein binding protein -0.0338661
PDIA4 protein disulfide isomerase family A, member 4 -0.0331924
BIRC6 baculoviral IAP repeat containing 6 -0.0330762
CALU calumenin -0.0326331
CAVIN1 caveolae associated protein 1 -0.0317381
JPT2 Jupiter microtubule associated homolog 2 -0.0308723
SPAG9 sperm associated antigen 9 -0.0303922
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0301459
TUBB tubulin, beta class I -0.0298416
FRMD5 FERM domain containing 5 -0.0295435
TM4SF1 transmembrane 4 L six family member 1 -0.0288256
AFAP1 actin filament associated protein 1 -0.0279601
WDR45B WD repeat domain 45B -0.0270323
RPL27A ribosomal protein L27a -0.0266977
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0265309
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0261791
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0260146
CTSD cathepsin D -0.0258062
ZNF217 zinc finger protein 217 -0.0257383
DHX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 -0.0256015
VDAC1 voltage-dependent anion channel 1 -0.0253138
TRPM7 transient receptor potential cation channel, subfamily M, member 7 -0.024519
HSPG2 heparan sulfate proteoglycan 2 -0.0244164
RAD21 RAD21 homolog (S. pombe) -0.0242873
SDK1 sidekick cell adhesion molecule 1 -0.0238753
IGF1R insulin-like growth factor 1 receptor -0.0236198
TMSB4X thymosin beta 4, X-linked -0.0234296
RNF213 ring finger protein 213 -0.0234228
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0234195
AHNAK2 AHNAK nucleoprotein 2 -0.0233979
FHL2 four and a half LIM domains 2 -0.0233462
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0231704
BMAL2 basic helix-loop-helix ARNT like 2 -0.0229602
HNRNPL heterogeneous nuclear ribonucleoprotein L -0.0224201
ACSL4 acyl-CoA synthetase long-chain family member 4 -0.0220372
H1-0 H1.0 linker histone -0.022035
RLF rearranged L-myc fusion -0.0218901
ZNF546 zinc finger protein 546 -0.0216984
RASAL2 RAS protein activator like 2 -0.0216743
S100A10 S100 calcium binding protein A10 -0.0216585
BLTP2 bridge-like lipid transfer protein family member 2 -0.0213313
RPS5 ribosomal protein S5 -0.0213302
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0212828
CD109 CD109 molecule -0.0210866
KMT2A lysine (K)-specific methyltransferase 2A -0.0210095
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 -0.0208793
PDE10A phosphodiesterase 10A -0.0206477
ARF1 ADP-ribosylation factor 1 -0.020536
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0204894
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0202493
CAV1 caveolin 1, caveolae protein, 22kDa -0.020237
GNAS GNAS complex locus -0.0201819
HMGA2 high mobility group AT-hook 2 -0.019971
NF1 neurofibromin 1 -0.019837
PRSS23 protease, serine, 23 -0.0198335
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0192818
RAB1B RAB1B, member RAS oncogene family -0.0192474
NPR2 natriuretic peptide receptor 2 -0.0192401
CARD18 caspase recruitment domain family, member 18 -0.0192063
SHTN1 shootin 1 -0.0186632
HM13 histocompatibility (minor) 13 -0.0186607
WASF2 WAS protein family, member 2 -0.0186118
NPAS2 neuronal PAS domain protein 2 -0.0185783
ENOSF1 enolase superfamily member 1 -0.0183378
PTPRF protein tyrosine phosphatase, receptor type, F -0.018133
BZW1 basic leucine zipper and W2 domains 1 -0.0181105
ANLN anillin, actin binding protein -0.0180572