Lipoproteins, VLDL Gene Set

Dataset dbGAP Gene-Trait Associations
Category disease or phenotype associations
Type trait
Description disease cluster belonging to disease group metabolic (Genetic Association Database)
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Genes

86 genes associated with the trait Lipoproteins, VLDL in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.

Symbol Name Standardized Value
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 1.34466
MAPKAP1 mitogen-activated protein kinase associated protein 1 1.1368
GAS2 growth arrest-specific 2 1.12934
PART1 prostate androgen-regulated transcript 1 (non-protein coding) 1.11948
BPHL biphenyl hydrolase-like (serine hydrolase) 1.107
SHROOM4 shroom family member 4 0.978785
MIR99AHG mir-99a-let-7c cluster host gene 0.93478
TCP1P2 t-complex 1 pseudogene 2 0.89966
CNTN4 contactin 4 0.892836
PARP8 poly (ADP-ribose) polymerase family, member 8 0.885519
PXDNL peroxidasin-like 0.881592
CACNB2 calcium channel, voltage-dependent, beta 2 subunit 0.815592
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 0.797354
SYT9 synaptotagmin IX 0.763947
GRIK2 glutamate receptor, ionotropic, kainate 2 0.759237
PPEF2 protein phosphatase, EF-hand calcium binding domain 2 0.743861
CENPF centromere protein F, 350/400kDa 0.728575
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.727732
MBD5 methyl-CpG binding domain protein 5 0.726886
ZFHX4 zinc finger homeobox 4 0.703215
KLHL14 kelch-like family member 14 0.697942
MYO10 myosin X 0.691062
PTPRD protein tyrosine phosphatase, receptor type, D 0.683038
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.659479
MYO16 myosin XVI 0.653041
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 0.646727
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.645674
RAP1A RAP1A, member of RAS oncogene family 0.621091
PCDH10 protocadherin 10 0.616713
ITGA6 integrin, alpha 6 0.602493
ORC3 origin recognition complex, subunit 3 0.591486
FGD4 FYVE, RhoGEF and PH domain containing 4 0.5864
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.586
PLCL2 phospholipase C-like 2 0.58586
XKR4 XK, Kell blood group complex subunit-related family, member 4 0.583788
CDK8 cyclin-dependent kinase 8 0.575968
ACVR2A activin A receptor, type IIA 0.567619
LPIN2 lipin 2 0.565807
VEPH1 ventricular zone expressed PH domain-containing 1 0.550567
F13A1 coagulation factor XIII, A1 polypeptide 0.533135
AKR1E2 aldo-keto reductase family 1, member E2 0.526197
LTBP1 latent transforming growth factor beta binding protein 1 0.509826
SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 0.48966
CASC15 cancer susceptibility candidate 15 (non-protein coding) 0.477572
NEBL nebulette 0.471148
BPGM 2,3-bisphosphoglycerate mutase 0.46117
KIAA1324 KIAA1324 0.455305
NRXN3 neurexin 3 0.450824
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 0.4466
MRPS35P3 mitochondrial ribosomal protein S35 pseudogene 3 0.442523
GPM6B glycoprotein M6B 0.427876
HIBADH 3-hydroxyisobutyrate dehydrogenase 0.406754
PCDH9 protocadherin 9 0.383
MEGF10 multiple EGF-like-domains 10 0.372234
DMD dystrophin 0.370195
SEMA6D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 0.354393
KLHL29 kelch-like family member 29 0.326396
CADPS Ca++-dependent secretion activator 0.324871
MAGOHB mago-nashi homolog B (Drosophila) 0.267852
ZNF385B zinc finger protein 385B 0.251437
CSRP2BP CSRP2 binding protein 0.221709
GABRG2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 0.210755
CTNNA3 catenin (cadherin-associated protein), alpha 3 0.209099
LRP1B low density lipoprotein receptor-related protein 1B 0.204594
NCKAP5 NCK-associated protein 5 0.186841
DNM3 dynamin 3 0.164037
PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa 0.160058
GREM2 gremlin 2, DAN family BMP antagonist 0.146815
EHF ets homologous factor 0.144157
CNTN6 contactin 6 0.135262
SGCZ sarcoglycan, zeta 0.123062
CHPT1 choline phosphotransferase 1 0.117437
EXOC5 exocyst complex component 5 0.116421
DLG1 discs, large homolog 1 (Drosophila) 0.114398
LAMA3 laminin, alpha 3 0.111885
FGF12 fibroblast growth factor 12 0.095719
LRRC4C leucine rich repeat containing 4C 0.08811
DNAH5 dynein, axonemal, heavy chain 5 0.082933
STYK1 serine/threonine/tyrosine kinase 1 0.077409
DEFB127 defensin, beta 127 0.076567
HSPA4L heat shock 70kDa protein 4-like 0.07197
TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa 0.066982
RNF150 ring finger protein 150 0.065319
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.059727
TTC41P tetratricopeptide repeat domain 41, pseudogene 0.058425
TRHDE thyrotropin-releasing hormone degrading enzyme 0.057776