Lonafarnib_NCI-H1792 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lonafarnib perturbation in NCI-H1792 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lonafarnib_NCI-H1792 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CD44 CD44 molecule (Indian blood group) 0.155314
CXCL8 chemokine (C-X-C motif) ligand 8 0.0706294
AKAP12 A kinase (PRKA) anchor protein 12 0.0677398
AHNAK AHNAK nucleoprotein 0.0638696
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0635946
NAV2 neuron navigator 2 0.0624274
SMAD3 SMAD family member 3 0.0600302
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0549346
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0548909
EEF2 eukaryotic translation elongation factor 2 0.0525577
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0512319
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0481953
ANTXR2 anthrax toxin receptor 2 0.0477193
STC1 stanniocalcin 1 0.0476918
NDRG1 N-myc downstream regulated 1 0.047351
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0446433
RPS12 ribosomal protein S12 0.044641
RPS8 ribosomal protein S8 0.044155
VEGFA vascular endothelial growth factor A 0.0421083
CDCP1 CUB domain containing protein 1 0.0414392
VIM vimentin 0.038962
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0386788
RUNX1 runt-related transcription factor 1 0.0384065
LOX lysyl oxidase 0.0378998
GRB10 growth factor receptor-bound protein 10 0.0376831
TRIO trio Rho guanine nucleotide exchange factor 0.0376087
ENO1 enolase 1, (alpha) 0.0368455
RPL37A ribosomal protein L37a 0.035901
PRELID2 PRELI domain containing 2 0.0358503
EFNA5 ephrin-A5 0.035748
ANGPTL4 angiopoietin-like 4 0.0348642
RPS3 ribosomal protein S3 0.0344867
RPS6 ribosomal protein S6 0.0334832
OSMR oncostatin M receptor 0.0327956
ANXA2 annexin A2 0.0327645
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.0319976
HMGA2 high mobility group AT-hook 2 0.0319882
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0314601
LOXL2 lysyl oxidase-like 2 0.0313694
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0312966
GFPT2 glutamine-fructose-6-phosphate transaminase 2 0.0310826
ECE1 endothelin converting enzyme 1 0.0307671
FBXL13 F-box and leucine-rich repeat protein 13 0.0297417
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0294915
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0289498
PKM pyruvate kinase, muscle 0.0287736
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 0.0287594
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0281632
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.027979
CA12 carbonic anhydrase XII 0.0278895
ASPH aspartate beta-hydroxylase 0.0276157
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.0275015
SEPTIN9 septin 9 0.0272439
TGM2 transglutaminase 2 0.0269659
TPT1 tumor protein, translationally-controlled 1 0.0268466
RPL5 ribosomal protein L5 0.026784
SRRM2 serine/arginine repetitive matrix 2 0.0262304
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0258557
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0258374
TMSB4X thymosin beta 4, X-linked 0.0257926
RAI14 retinoic acid induced 14 0.0256874
ANKRD28 ankyrin repeat domain 28 0.0256652
BIRC3 baculoviral IAP repeat containing 3 0.0254731
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0250999
FNDC3B fibronectin type III domain containing 3B 0.0245948
BHLHE40 basic helix-loop-helix family, member e40 0.0244611
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0242846
MYO10 myosin X 0.0242731
ELL2 elongation factor, RNA polymerase II, 2 0.0239462
MCL1 myeloid cell leukemia 1 0.0234239
SOD2 superoxide dismutase 2, mitochondrial 0.023215
RPS13 ribosomal protein S13 0.0231013
RPLP2 ribosomal protein, large, P2 0.0230842
IRAK2 interleukin-1 receptor-associated kinase 2 0.0229586
FTH1 ferritin, heavy polypeptide 1 0.022822
B2M beta-2-microglobulin 0.0223135
RPL13A ribosomal protein L13a 0.0219944
DOCK5 dedicator of cytokinesis 5 0.0219538
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0218997
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0214981
RPL28 ribosomal protein L28 0.0211993
HIPK2 homeodomain interacting protein kinase 2 0.0208154
ALCAM activated leukocyte cell adhesion molecule 0.0206955
MSRB3 methionine sulfoxide reductase B3 0.0205881
RPLP0 ribosomal protein, large, P0 0.020579
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0205122
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0204691
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 0.0202311
NAP1L1 nucleosome assembly protein 1-like 1 0.020063
FER fer (fps/fes related) tyrosine kinase 0.0197761
BACE2 beta-site APP-cleaving enzyme 2 0.0197494
RPS29 ribosomal protein S29 0.0197461
RPL11 ribosomal protein L11 0.0197457
AMPD3 adenosine monophosphate deaminase 3 0.0196576
RPL37 ribosomal protein L37 0.0195908
EGFR epidermal growth factor receptor 0.0195212
SLC41A2 solute carrier family 41 (magnesium transporter), member 2 0.0193406
RACK1 receptor for activated C kinase 1 0.0193165
MGST1 microsomal glutathione S-transferase 1 0.0193024
CAPN2 calpain 2, (m/II) large subunit 0.019162

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0765238
TMSB10 thymosin beta 10 -0.0590167
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0404594
RBM39 RNA binding motif protein 39 -0.0401113
FTL ferritin, light polypeptide -0.0374279
GOLGA4 golgin A4 -0.0351652
PTMA prothymosin, alpha -0.0331518
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0314641
DPYD dihydropyrimidine dehydrogenase -0.0314118
GLCCI1 glucocorticoid induced 1 -0.0275071
DLG1 discs, large homolog 1 (Drosophila) -0.0275026
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0262244
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0259543
HBP1 HMG-box transcription factor 1 -0.0228409
MORF4L2 mortality factor 4 like 2 -0.0227738
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0189476
NAMPT nicotinamide phosphoribosyltransferase -0.0188567
ARF4 ADP-ribosylation factor 4 -0.0188011
BASP1 brain abundant, membrane attached signal protein 1 -0.018672
HDLBP high density lipoprotein binding protein -0.0186504
NCOA7 nuclear receptor coactivator 7 -0.0184323
SPAG9 sperm associated antigen 9 -0.018258
WSB1 WD repeat and SOCS box containing 1 -0.0182103
LCORL ligand dependent nuclear receptor corepressor-like -0.0180471
STRN3 striatin, calmodulin binding protein 3 -0.0178235
PDLIM5 PDZ and LIM domain 5 -0.0177868
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0177841
SRP54 signal recognition particle 54kDa -0.0176637
C15ORF48 chromosome 15 open reading frame 48 -0.0176562
GPC6 glypican 6 -0.0172788
MECOM MDS1 and EVI1 complex locus -0.0167067
KDM3A lysine (K)-specific demethylase 3A -0.015891
GARS1 glycyl-tRNA synthetase 1 -0.0157642
SEC31A SEC31 homolog A (S. cerevisiae) -0.0157413
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0151693
ITCH itchy E3 ubiquitin protein ligase -0.0148888
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0146884
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 -0.0146001
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0145676
COG5 component of oligomeric golgi complex 5 -0.0144783
SYT1 synaptotagmin I -0.0144433
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 -0.0143724
TTC3 tetratricopeptide repeat domain 3 -0.014302
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0142621
ACBD3 acyl-CoA binding domain containing 3 -0.014043
GLG1 golgi glycoprotein 1 -0.0138194
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0137044
USP3 ubiquitin specific peptidase 3 -0.0136741
COPA coatomer protein complex, subunit alpha -0.0136737
BLZF1 basic leucine zipper nuclear factor 1 -0.0136529
PARD3 par-3 family cell polarity regulator -0.0134217
DDIT3 DNA-damage-inducible transcript 3 -0.0130515
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 -0.012906
TMEM263 transmembrane protein 263 -0.0125437
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 -0.0122915
KMT2C lysine (K)-specific methyltransferase 2C -0.012247
RAB5A RAB5A, member RAS oncogene family -0.0121644
AUH AU RNA binding protein/enoyl-CoA hydratase -0.0121495
IFI44 interferon-induced protein 44 -0.012005
PSD3 pleckstrin and Sec7 domain containing 3 -0.0119921
SUCO SUN domain containing ossification factor -0.0118574
ATXN2 ataxin 2 -0.0118501
ZNF609 zinc finger protein 609 -0.0115747
GNAS GNAS complex locus -0.0115698
TMTC1 transmembrane and tetratricopeptide repeat containing 1 -0.0114781
TRA2A transformer 2 alpha homolog (Drosophila) -0.0114677
TAOK1 TAO kinase 1 -0.0113471
RIGI RNA sensor RIG-I -0.0113383
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 -0.0112131
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0111923
KLHL24 kelch-like family member 24 -0.010973
EIF1 eukaryotic translation initiation factor 1 -0.0109301
VMP1 vacuole membrane protein 1 -0.0109292
WASF2 WAS protein family, member 2 -0.0109208
SLC38A1 solute carrier family 38, member 1 -0.0107352
UBE2B ubiquitin-conjugating enzyme E2B -0.0106547
HIBADH 3-hydroxyisobutyrate dehydrogenase -0.0105805
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0105657
LMAN1 lectin, mannose-binding, 1 -0.0104718
MINDY2 MINDY lysine 48 deubiquitinase 2 -0.010378
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0102669
CFAP73 cilia and flagella associated protein 73 -0.0102374
POU2F1 POU class 2 homeobox 1 -0.0102082
TNS3 tensin 3 -0.0101635
MEF2A myocyte enhancer factor 2A -0.00999796
MON2 MON2 homolog (S. cerevisiae) -0.00994576
P4HB prolyl 4-hydroxylase, beta polypeptide -0.00982454
LIMCH1 LIM and calponin homology domains 1 -0.00981674
TJP1 tight junction protein 1 -0.00968617
PHF21A PHD finger protein 21A -0.00967811
CFDP1 craniofacial development protein 1 -0.00965457
HILPDA hypoxia inducible lipid droplet-associated -0.00963319
EGR1 early growth response 1 -0.00962151
CCDC88A coiled-coil domain containing 88A -0.00956726
RB1CC1 RB1-inducible coiled-coil 1 -0.00954909
RAB6A RAB6A, member RAS oncogene family -0.00954016
DNER delta/notch-like EGF repeat containing -0.00943996
CLINT1 clathrin interactor 1 -0.00941672
PHIP pleckstrin homology domain interacting protein -0.00939659
IFI44L interferon-induced protein 44-like -0.00937245