Lopinavir_COLO 205 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Lopinavir perturbation in COLO 205 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Lopinavir_COLO 205 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 0.175462
INTS6 integrator complex subunit 6 0.133907
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.128168
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 0.111281
BTBD9 BTB (POZ) domain containing 9 0.103605
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0957094
MYH9 myosin, heavy chain 9, non-muscle 0.0738913
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0654414
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 0.0649889
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 0.0600877
PLSCR2 phospholipid scramblase 2 0.0595157
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.0585891
PARP14 poly (ADP-ribose) polymerase family, member 14 0.05712
PRELID2 PRELI domain containing 2 0.0492354
RNF213 ring finger protein 213 0.0478428
HDLBP high density lipoprotein binding protein 0.046695
SMAD3 SMAD family member 3 0.0418726
EFNB2 ephrin-B2 0.0418441
ERRFI1 ERBB receptor feedback inhibitor 1 0.0412471
AHNAK AHNAK nucleoprotein 0.0409564
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 0.040902
MBNL2 muscleblind-like splicing regulator 2 0.038467
SHB Src homology 2 domain containing adaptor protein B 0.0382027
RUNX1 runt-related transcription factor 1 0.0380041
ELOF1 elongation factor 1 homolog (S. cerevisiae) 0.0375282
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.0375024
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0374659
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0347603
STK24 serine/threonine kinase 24 0.0346434
CTNND1 catenin (cadherin-associated protein), delta 1 0.0336063
NRIP1 nuclear receptor interacting protein 1 0.0333118
H1-0 H1.0 linker histone 0.0329979
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0329622
ARGLU1 arginine and glutamate rich 1 0.0316723
RNF43 ring finger protein 43 0.0315937
MCTP2 multiple C2 domains, transmembrane 2 0.0313351
DSCAM Down syndrome cell adhesion molecule 0.0301105
EREG epiregulin 0.0299375
SERINC5 serine incorporator 5 0.0292547
IGF1R insulin-like growth factor 1 receptor 0.0285568
SP100 SP100 nuclear antigen 0.0275838
ANKRD10 ankyrin repeat domain 10 0.0267585
SIPA1L2 signal-induced proliferation-associated 1 like 2 0.0266584
DSPP dentin sialophosphoprotein 0.0266393
VPS37B vacuolar protein sorting 37 homolog B (S. cerevisiae) 0.0261796
TM9SF2 transmembrane 9 superfamily member 2 0.0260386
NCOA3 nuclear receptor coactivator 3 0.0259186
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 0.0257126
NKD1 naked cuticle homolog 1 (Drosophila) 0.0251331
LMO7 LIM domain 7 0.0248173
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.0247657
VCL vinculin 0.0247555
TOX3 TOX high mobility group box family member 3 0.0246925
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0245197
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0244222
LURAP1L leucine rich adaptor protein 1-like 0.0244072
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0243056
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0241398
FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 0.0237093
UTRN utrophin 0.0236687
GSK3B glycogen synthase kinase 3 beta 0.0235418
PHF3 PHD finger protein 3 0.0235306
PDIA4 protein disulfide isomerase family A, member 4 0.0234057
MBD5 methyl-CpG binding domain protein 5 0.0233027
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0232906
KLF5 Kruppel-like factor 5 (intestinal) 0.0231142
MED13 mediator complex subunit 13 0.0230777
SBF2 SET binding factor 2 0.0226689
USP9X ubiquitin specific peptidase 9, X-linked 0.022574
TBPL1 TBP-like 1 0.0225643
ARHGAP32 Rho GTPase activating protein 32 0.022478
CTBP2 C-terminal binding protein 2 0.0223681
EHF ets homologous factor 0.0222577
RASSF6 Ras association (RalGDS/AF-6) domain family member 6 0.0222227
ZSWIM6 zinc finger, SWIM-type containing 6 0.0222133
ACTN4 actinin, alpha 4 0.0221081
ENOX1 ecto-NOX disulfide-thiol exchanger 1 0.0220253
ATXN1 ataxin 1 0.0219447
EXOC4 exocyst complex component 4 0.0218649
OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa 0.0211657
DOCK1 dedicator of cytokinesis 1 0.0211277
CANX calnexin 0.0209001
ASPH aspartate beta-hydroxylase 0.0208488
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0208387
SUCO SUN domain containing ossification factor 0.0207875
FOXP1 forkhead box P1 0.0207778
YAP1 Yes-associated protein 1 0.0206877
GOLGA2 golgin A2 0.0205371
PDK3 pyruvate dehydrogenase kinase, isozyme 3 0.0204878
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0204388
CUL3 cullin 3 0.0204066
IFNGR1 interferon gamma receptor 1 0.0203044
KMT2C lysine (K)-specific methyltransferase 2C 0.0202565
DIAPH3 diaphanous-related formin 3 0.0202325
STARD4 StAR-related lipid transfer (START) domain containing 4 0.0202294
LNPEP leucyl/cystinyl aminopeptidase 0.0202043
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0201361
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 0.020069
ZC3H11A zinc finger CCCH-type containing 11A 0.0200392
LNX1 ligand of numb-protein X 1, E3 ubiquitin protein ligase 0.0198453

decreased expression

Symbol Name Standardized Value
B2M beta-2-microglobulin -0.173853
LYZ lysozyme -0.120686
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.112906
EGR1 early growth response 1 -0.10173
HLA-B major histocompatibility complex, class I, B -0.0848132
FTH1 ferritin, heavy polypeptide 1 -0.0846052
LCN2 lipocalin 2 -0.0819173
PTMA prothymosin, alpha -0.0739299
C6ORF132 chromosome 6 open reading frame 132 -0.0709542
RAB7A RAB7A, member RAS oncogene family -0.0664719
TMC5 transmembrane channel-like 5 -0.0648098
IGFBP3 insulin-like growth factor binding protein 3 -0.0615622
POTEF POTE ankyrin domain family, member F -0.0606914
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0606636
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) -0.0593482
NDRG1 N-myc downstream regulated 1 -0.0584831
LOC102724023 ES1 protein homolog, mitochondrial -0.0581026
FTL ferritin, light polypeptide -0.0578039
IFI27 interferon, alpha-inducible protein 27 -0.0565345
ERBIN erbb2 interacting protein -0.0546508
TPT1 tumor protein, translationally-controlled 1 -0.0545888
SLC38A1 solute carrier family 38, member 1 -0.0510917
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0508387
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0499652
RPS6 ribosomal protein S6 -0.0496201
ZMYND8 zinc finger, MYND-type containing 8 -0.0460247
RPL35A ribosomal protein L35a -0.0459183
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) -0.0451319
MX1 MX dynamin-like GTPase 1 -0.0450549
TMSB10 thymosin beta 10 -0.0426384
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0419786
EZR ezrin -0.0419554
IFI6 interferon, alpha-inducible protein 6 -0.0397488
NT5C3A 5'-nucleotidase, cytosolic IIIA -0.0394563
AREG amphiregulin -0.0389789
HLA-A major histocompatibility complex, class I, A -0.0379919
CSTB cystatin B (stefin B) -0.0369311
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0366109
IFITM3 interferon induced transmembrane protein 3 -0.0362866
UBC ubiquitin C -0.0358518
DSTN destrin (actin depolymerizing factor) -0.0351014
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0346395
EPSTI1 epithelial stromal interaction 1 (breast) -0.0340917
S100A6 S100 calcium binding protein A6 -0.0327532
MT2A metallothionein 2A -0.0326711
MCL1 myeloid cell leukemia 1 -0.0326081
VDAC1 voltage-dependent anion channel 1 -0.0322359
WDR45B WD repeat domain 45B -0.0321907
ZNF609 zinc finger protein 609 -0.0318192
CST3 cystatin C -0.0315215
ACBD3 acyl-CoA binding domain containing 3 -0.0314416
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.031369
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0308715
VEGFA vascular endothelial growth factor A -0.0307556
RPL34 ribosomal protein L34 -0.0306359
SCARB1 scavenger receptor class B, member 1 -0.0304289
POMP proteasome maturation protein -0.0302417
CCNL1 cyclin L1 -0.0300985
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0300504
DIAPH1 diaphanous-related formin 1 -0.0298426
RPS8 ribosomal protein S8 -0.0293294
ACTG1 actin gamma 1 -0.0291516
SEC31A SEC31 homolog A (S. cerevisiae) -0.0291051
HM13 histocompatibility (minor) 13 -0.0283612
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 -0.0283278
S100A9 S100 calcium binding protein A9 -0.0277243
EFHD2 EF-hand domain family, member D2 -0.0272203
RPS19 ribosomal protein S19 -0.0271406
ZNF292 zinc finger protein 292 -0.0270248
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0270047
BLZF1 basic leucine zipper nuclear factor 1 -0.0269999
RPLP1 ribosomal protein, large, P1 -0.026947
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0269469
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0269288
JUN jun proto-oncogene -0.0264991
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0262795
RPLP0 ribosomal protein, large, P0 -0.026273
PTGR1 prostaglandin reductase 1 -0.0259023
PERP PERP, TP53 apoptosis effector -0.0258573
TFF3 trefoil factor 3 (intestinal) -0.025775
ITPKC inositol-trisphosphate 3-kinase C -0.0257005
SPATA13 spermatogenesis associated 13 -0.0255481
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0255047
GCC2 GRIP and coiled-coil domain containing 2 -0.0254488
RPS13 ribosomal protein S13 -0.0253563
FOSB FBJ murine osteosarcoma viral oncogene homolog B -0.0252606
ATF4 activating transcription factor 4 -0.0252499
XDH xanthine dehydrogenase -0.0252016
UGCG UDP-glucose ceramide glucosyltransferase -0.0251311
MAP3K5 mitogen-activated protein kinase kinase kinase 5 -0.0249698
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0248625
RPL37A ribosomal protein L37a -0.0245343
RPS27 ribosomal protein S27 -0.0245023
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0244015
HLA-C major histocompatibility complex, class I, C -0.024385
KPNB1 karyopherin (importin) beta 1 -0.024225
ANKRD12 ankyrin repeat domain 12 -0.0242133
FHL2 four and a half LIM domains 2 -0.0241177
YBX3 Y box binding protein 3 -0.024088
CLDN4 claudin 4 -0.0237841