MC116 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

52 genes with high or low copy number in MC116 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
HEATR4 HEAT repeat containing 4 2.3521
TCP10 t-complex 10 2.34016
DOCK3 dedicator of cytokinesis 3 2.28998
TMEM72-AS1 TMEM72 antisense RNA 1 2.01477
PRR5 proline rich 5 (renal) 1.98594
SPACA5B sperm acrosome associated 5B 1.93509
SPACA5 sperm acrosome associated 5 1.93509
YY1AP1 YY1 associated protein 1 1.75033
SPATA31C1 SPATA31 subfamily C, member 1 1.70336
GOLGA8DP golgin A8 family, member D, pseudogene 1.64833
GOLGA6L1 golgin A6 family-like 1 1.63821
LINC01193 long intergenic non-protein coding RNA 1193 1.62125
OR4F4 olfactory receptor, family 4, subfamily F, member 4 1.61518
PRR5-ARHGAP8 PRR5-ARHGAP8 readthrough 1.58487
SCARNA2 small Cajal body-specific RNA 2 1.55561
C1ORF194 chromosome 1 open reading frame 194 1.55559
KIAA1324 KIAA1324 1.53901
NF1P2 neurofibromin 1 pseudogene 2 1.53887
SFMBT1 Scm-like with four mbt domains 1 1.51253
PKD1P1 polycystic kidney disease 1 (autosomal dominant) pseudogene 1 1.5056
RYR2 ryanodine receptor 2 (cardiac) 1.44405

low copy number

Symbol Name Standardized Value
SH3KBP1 SH3-domain kinase binding protein 1 -3.21049
MCHR1 melanin-concentrating hormone receptor 1 -3.20391
EVI5 ecotropic viral integration site 5 -2.87519
TUBBP5 tubulin, beta pseudogene 5 -2.74596
PTPN14 protein tyrosine phosphatase, non-receptor type 14 -2.33773
MGC27382 uncharacterized MGC27382 -2.20327
HS1BP3 HCLS1 binding protein 3 -2.03829
IL4I1 interleukin 4 induced 1 -2.00402
NUP62 nucleoporin 62kDa -2.00401
RFWD2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase -1.9337
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) -1.91009
CCDC144B coiled-coil domain containing 144B (pseudogene) -1.80782
FAM106A family with sequence similarity 106, member A -1.80414
HAPLN1 hyaluronan and proteoglycan link protein 1 -1.79262
KIAA0125 KIAA0125 -1.77346
MYO9A myosin IXA -1.73667
LINC00266-1 long intergenic non-protein coding RNA 266-1 -1.71885
IDO2 indoleamine 2,3-dioxygenase 2 -1.68502
LINC00989 long intergenic non-protein coding RNA 989 -1.67171
RIMBP2 RIMS binding protein 2 -1.63701
USP32P2 ubiquitin specific peptidase 32 pseudogene 2 -1.59931
RAD21 RAD21 homolog (S. pombe) -1.5814
LGALS9C lectin, galactoside-binding, soluble, 9C -1.52764
BTBD9 BTB (POZ) domain containing 9 -1.46916
OR4N4 olfactory receptor, family 4, subfamily N, member 4 -1.46203
ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 -1.45037
MARCH8 membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase -1.44483
KCNJ3 potassium channel, inwardly rectifying subfamily J, member 3 -1.43086
MED30 mediator complex subunit 30 -1.42079
SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 -1.40612
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 -1.39309