MDAMB231 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

510 genes with high or low copy number in MDAMB231 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ABCA11P ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene 2.59998
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 2.59998
PNPLA1 patatin-like phospholipase domain containing 1 2.3003
C6ORF222 chromosome 6 open reading frame 222 2.3003
KCTD20 potassium channel tetramerization domain containing 20 2.30029
STK38 serine/threonine kinase 38 2.30029
ETV7 ets variant 7 2.30025
PXT1 peroxisomal, testis specific 1 2.30023
MAPK14 mitogen-activated protein kinase 14 2.30011
BRPF3 bromodomain and PHD finger containing, 3 2.30009
MAPK13 mitogen-activated protein kinase 13 2.30009
MIR3925 microRNA 3925 2.29958
SRSF3 serine/arginine-rich splicing factor 3 2.29958
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 2.29954
SLC26A8 solute carrier family 26 (anion exchanger), member 8 2.22481
ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2.22478
SRPK1 SRSF protein kinase 1 2.22466
LHFPL5 lipoma HMGIC fusion partner-like 5 2.22464
TULP1 tubby like protein 1 2.2246
PPARD peroxisome proliferator-activated receptor delta 2.2246
MIR5690 microRNA 5690 2.22458
TEAD3 TEA domain family member 3 2.22458
ARMC12 armadillo repeat containing 12 2.22458
RPL10A ribosomal protein L10a 2.22454
FANCE Fanconi anemia, complementation group E 2.22454
CLPSL2 colipase-like 2 2.22454
TCP11 t-complex 11, testis-specific 2.22454
LOC285847 uncharacterized LOC285847 2.22444
ZNF76 zinc finger protein 76 2.2244
DEF6 differentially expressed in FDCP 6 homolog (mouse) 2.22432
CPNE5 copine V 2.16332
RAB44 RAB44, member RAS oncogene family 2.16321
C6ORF89 chromosome 6 open reading frame 89 2.16318
PPIL1 peptidylprolyl isomerase (cyclophilin)-like 1 2.16317
FKBP5 FK506 binding protein 5 2.16123
CLPS colipase, pancreatic 2.13088
SCUBE3 signal peptide, CUB domain, EGF-like 3 2.10631
MIR4462 microRNA 4462 2.06232
MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 2.06231
PIM1 Pim-1 proto-oncogene, serine/threonine kinase 2.06231
TBC1D22B TBC1 domain family, member 22B 2.06231
CCDC167 coiled-coil domain containing 167 2.06228
CMTR1 cap methyltransferase 1 2.06228
MTCH1 mitochondrial carrier 1 2.06223
PI16 peptidase inhibitor 16 2.0622
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 2.03677
SRF serum response factor (c-fos serum response element-binding transcription factor) 2.03666
CUL9 cullin 9 2.03666
CLPSL1 colipase-like 1 2.03469
FGD2 FYVE, RhoGEF and PH domain containing 2 1.9816
RNF8 ring finger protein 8, E3 ubiquitin protein ligase 1.98081
PEX6 peroxisomal biogenesis factor 6 1.96505
MRPL2 mitochondrial ribosomal protein L2 1.96505
GNMT glycine N-methyltransferase 1.96505
PPP2R5D protein phosphatase 2, regulatory subunit B', delta 1.96505
MEA1 male-enhanced antigen 1 1.96505
PTCRA pre T-cell antigen receptor alpha 1.96505
KLHDC3 kelch domain containing 3 1.96505
CNPY3 canopy FGF signaling regulator 3 1.96505
CUL7 cullin 7 1.96505
RRP36 ribosomal RNA processing 36 homolog (S. cerevisiae) 1.96505
TMEM217 transmembrane protein 217 1.96138
PTK7 protein tyrosine kinase 7 (inactive) 1.95989
KLC4 kinesin light chain 4 1.95988
ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 1.90338
ZFAND3 zinc finger, AN1-type domain 3 1.8773
BTBD9 BTB (POZ) domain containing 9 1.80307
LRFN2 leucine rich repeat and fibronectin type III domain containing 2 1.79902
ADCY10P1 adenylate cyclase 10 (soluble) pseudogene 1 1.79885
LINC00951 long intergenic non-protein coding RNA 951 1.79884
TREML1 triggering receptor expressed on myeloid cells-like 1 1.79883
NFYA nuclear transcription factor Y, alpha 1.79883
UNC5CL unc-5 homolog C (C. elegans)-like 1.79883
TSPO2 translocator protein 2 1.79882
OARD1 O-acyl-ADP-ribose deacylase 1 1.79882
APOBEC2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 1.79882
TDRG1 testis development related 1 (non-protein coding) 1.79881
C6ORF226 chromosome 6 open reading frame 226 1.79213
RPL7L1 ribosomal protein L7-like 1 1.79213
NUTM2A-AS1 NUTM2A antisense RNA 1 1.78946
TREM2 triggering receptor expressed on myeloid cells 2 1.75297
PRPH2 peripherin 2 (retinal degeneration, slow) 1.74687
TBCC tubulin folding cofactor C 1.74687
ATP6V0CP3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3 1.74687
GLTSCR1L GLTSCR1-like 1.74686
TREML3P triggering receptor expressed on myeloid cells-like 3, pseudogene 1.7377
NCR2 natural cytotoxicity triggering receptor 2 1.7377
TREM1 triggering receptor expressed on myeloid cells 1 1.7377
TREML4 triggering receptor expressed on myeloid cells-like 4 1.7377
TREML5P triggering receptor expressed on myeloid cells-like 5, pseudogene 1.7377
MIR4641 microRNA 4641 1.7377
TREML2 triggering receptor expressed on myeloid cells-like 2 1.73768
FOXP4 forkhead box P4 1.73766
MDFI MyoD family inhibitor 1.73691
UBR2 ubiquitin protein ligase E3 component n-recognin 2 1.71252
DAAM2 dishevelled associated activator of morphogenesis 2 1.71143
MOCS1 molybdenum cofactor synthesis 1 1.71139
PGC progastricsin (pepsinogen C) 1.6968
TFEB transcription factor EB 1.69677
TOMM6 translocase of outer mitochondrial membrane 6 homolog (yeast) 1.6612
PRICKLE4 prickle homolog 4 (Drosophila) 1.6612
FRS3 fibroblast growth factor receptor substrate 3 1.6612
TRERF1 transcriptional regulating factor 1 1.61668
LMBRD1 LMBR1 domain containing 1 1.61591
MRPS10 mitochondrial ribosomal protein S10 1.60417
GUCA1B guanylate cyclase activator 1B (retina) 1.60416
USP49 ubiquitin specific peptidase 49 1.59688
BYSL bystin-like 1.59677
MED20 mediator complex subunit 20 1.59677
COL9A1 collagen, type IX, alpha 1 1.59371
CCND3 cyclin D3 1.57723
GUCA1A guanylate cyclase activator 1A (retina) 1.577
C6ORF132 chromosome 6 open reading frame 132 1.57699
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 1.57697
SIRPB1 signal-regulatory protein beta 1 1.57193
COL19A1 collagen, type XIX, alpha 1 1.5688
HCG23 HLA complex group 23 (non-protein coding) 1.56695
BTNL2 butyrophilin-like 2 1.56666
HLA-DRA major histocompatibility complex, class II, DR alpha 1.56588
KCNQ5-AS1 KCNQ5 antisense RNA 1 1.55681
GGT3P gamma-glutamyltransferase 3 pseudogene 1.55001
RIMS1 regulating synaptic membrane exocytosis 1 1.5489
FAM135A family with sequence similarity 135, member A 1.54671
SDHAF4 succinate dehydrogenase complex assembly factor 4 1.53051
OGFRL1 opioid growth factor receptor-like 1 1.52759
LGSN lengsin, lens protein with glutamine synthetase domain 1.52595
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 1.525
SLC17A5 solute carrier family 17 (acidic sugar transporter), member 5 1.52486
MIR548A2 microRNA 548a-2 1.52377
CD109 CD109 molecule 1.52021
DDX43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 1.5193
KHDC3L KH domain containing 3-like, subcortical maternal complex member 1.5193
OOEP oocyte expressed protein 1.5193
SLC25A51P1 solute carrier family 25, member 51 pseudogene 1 1.51385
C6ORF10 chromosome 6 open reading frame 10 1.5118
KHDC1L KH homology domain containing 1-like 1.50917
MIR4282 microRNA 4282 1.50465
MIR30C2 microRNA 30c-2 1.50177
KANK1 KN motif and ankyrin repeat domains 1 1.49834
MIR30A microRNA 30a 1.4973
DPPA5 developmental pluripotency associated 5 1.49408
KHDC1 KH homology domain containing 1 1.49408
MB21D1 Mab-21 domain containing 1 1.49399
LINC00472 long intergenic non-protein coding RNA 472 1.49398
SMAP1 small ArfGAP 1 1.49267
ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 1.48861
SLC25A27 solute carrier family 25, member 27 1.4886
TDRD6 tudor domain containing 6 1.4886
PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 1.4886
RNF5 ring finger protein 5, E3 ubiquitin protein ligase 1.48496
GPSM3 G-protein signaling modulator 3 1.48496
AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 1.48496
AGER advanced glycosylation end product-specific receptor 1.48496
PBX2 pre-B-cell leukemia homeobox 2 1.48496
NOTCH4 notch 4 1.48477
EGFL8 EGF-like-domain, multiple 8 1.48141
MTO1 mitochondrial tRNA translation optimization 1 1.47959
LOC100507547 uncharacterized LOC100507547 1.47713
PPT2 palmitoyl-protein thioesterase 2 1.47713
FKBPL FK506 binding protein like 1.47713
PPT2-EGFL8 PPT2-EGFL8 readthrough (NMD candidate) 1.47713
PRRT1 proline-rich transmembrane protein 1 1.47713
ANKRD66 ankyrin repeat domain 66 1.47223
MIR586 microRNA 586 1.46945
RUNX2 runt-related transcription factor 2 1.46939
ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 1.46544
CYP39A1 cytochrome P450, family 39, subfamily A, polypeptide 1 1.46538
HLA-B major histocompatibility complex, class I, B 1.46333
B3GAT2 beta-1,3-glucuronyltransferase 2 1.46273
RCAN2 regulator of calcineurin 2 1.46033
MIR4642 microRNA 4642 1.45823
SNRPC small nuclear ribonucleoprotein polypeptide C 1.45225
TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa 1.45206
PTP4A1 protein tyrosine phosphatase type IVA, member 1 1.45047
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 1.44928
PHF3 PHD finger protein 3 1.44924
OPN5 opsin 5 1.44546
ADGRF4 adhesion G protein-coupled receptor F4 1.44543
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 1.44207
TNXA tenascin XA (pseudogene) 1.44207
CYP21A1P cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene 1.44207
C4A complement component 4A (Rodgers blood group) 1.44187
STK19 serine/threonine kinase 19 1.44187
DXO decapping exoribonuclease 1.44187
C4B complement component 4B (Chido blood group) 1.44187
C4B_2 complement component 4B (Chido blood group), copy 2 1.44187
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 1.44171
MIR1236 microRNA 1236 1.44167
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 1.44167
NELFE negative elongation factor complex member E 1.4416
BEND6 BEN domain containing 6 1.4412
CD2AP CD2-associated protein 1.44087
MRPL14 mitochondrial ribosomal protein L14 1.43997
SLC29A1 solute carrier family 29 (equilibrative nucleoside transporter), member 1 1.43996
TCTE1 t-complex-associated-testis-expressed 1 1.43959
SLC35B2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 1.43959
NFKBIE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon 1.43959
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 1.43959
MIR4647 microRNA 4647 1.43959
TMEM151B transmembrane protein 151B 1.43959
MEP1A meprin A, alpha (PABA peptide hydrolase) 1.437
SPATS1 spermatogenesis associated, serine-rich 1 1.43692
MIR1275 microRNA 1275 1.43631
C6ORF223 chromosome 6 open reading frame 223 1.43561
SPDEF SAM pointed domain containing ETS transcription factor 1.43181
GRM4 glutamate receptor, metabotropic 4 1.43148
RAB23 RAB23, member RAS oncogene family 1.43141
BAG2 BCL2-associated athanogene 2 1.43141
C6ORF106 chromosome 6 open reading frame 106 1.43056
MICA MHC class I polypeptide-related sequence A 1.43037
LTA lymphotoxin alpha 1.42649
ADGRF2 adhesion G protein-coupled receptor F2 1.42265
SNORD52 small nucleolar RNA, C/D box 52 1.42254
C6ORF48 chromosome 6 open reading frame 48 1.42254
NEU1 sialidase 1 (lysosomal sialidase) 1.42254
SNORD48 small nucleolar RNA, C/D box 48 1.42254
HSPA1B heat shock 70kDa protein 1B 1.42254
EHMT2 euchromatic histone-lysine N-methyltransferase 2 1.42247
HSPA1A heat shock 70kDa protein 1A 1.42247
ZBTB12 zinc finger and BTB domain containing 12 1.42247
CFB complement factor B 1.42247
C2 complement component 2 1.42247
SLC44A4 solute carrier family 44, member 4 1.42247
VEGFA vascular endothelial growth factor A 1.42212
HSPA1L heat shock 70kDa protein 1-like 1.42198
LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) 1.42198
ADGRF1 adhesion G protein-coupled receptor F1 1.42133
AARS2 alanyl-tRNA synthetase 2, mitochondrial 1.41933
TMEM63B transmembrane protein 63B 1.41867
CAPN11 calpain 11 1.41867
HCP5 HLA complex P5 (non-protein coding) 1.41793
SPRNP1 shadow of prion protein homolog (zebrafish) pseudogene 1 1.4178
ATP6V1G2-DDX39B ATP6V1G2-DDX39B readthrough (NMD candidate) 1.41603
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 1.41603
MCCD1 mitochondrial coiled-coil domain 1 1.41597
SNORD117 small nucleolar RNA, C/D box 117 1.41591
CDC5L cell division cycle 5-like 1.41573
PACSIN1 protein kinase C and casein kinase substrate in neurons 1 1.41334
RPS10 ribosomal protein S10 1.41278
CLIC5 chloride intracellular channel 5 1.41259
C6ORF1 chromosome 6 open reading frame 1 1.41045
HMGA1 high mobility group AT-hook 1 1.41045
UHRF1BP1 UHRF1 binding protein 1 1.40969
LINC01512 long intergenic non-protein coding RNA 1512 1.40901
AIF1 allograft inflammatory factor 1 1.40876
PTCHD4 patched domain containing 4 1.40864
LTB lymphotoxin beta (TNF superfamily, member 3) 1.40805
NCR3 natural cytotoxicity triggering receptor 3 1.40805
TNF tumor necrosis factor 1.40805
LST1 leukocyte specific transcript 1 1.40805
SYCE1 synaptonemal complex central element protein 1 1.40693
KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 1.40612
SNORD84 small nucleolar RNA, C/D box 84 1.40597
NFKBIL1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 1.40597
ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 1.40597
ATF6B activating transcription factor 6 beta 1.40439
VARS valyl-tRNA synthetase 1.40381
GTPBP2 GTP binding protein 2 1.40364
MRPS18A mitochondrial ribosomal protein S18A 1.40165
KIAA1586 KIAA1586 1.4016
SCART1 scavenger receptor protein family member 1.40134
COL21A1 collagen, type XXI, alpha 1 1.40088
HCG26 HLA complex group 26 (non-protein coding) 1.39962
CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 1.39629
ADGRF5 adhesion G protein-coupled receptor F5 1.39625
HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 1.39373
BMP5 bone morphogenetic protein 5 1.39372
MICB MHC class I polypeptide-related sequence B 1.3926
NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 1.39222
RPS10-NUDT3 RPS10-NUDT3 readthrough 1.39222
ZNF451 zinc finger protein 451 1.3922
SAPCD1 suppressor APC domain containing 1 1.39147
VWA7 von Willebrand factor A domain containing 7 1.39147
BAG6 BCL2-associated athanogene 6 1.38989
SNORA38 small nucleolar RNA, H/ACA box 38 1.38962
PRRC2A proline-rich coiled-coil 2A 1.38947
APOM apolipoprotein M 1.38453
MAD2L1BP MAD2L1 binding protein 1.38381
DST dystonin 1.38287
MLN motilin 1.38075
LEMD2 LEM domain containing 2 1.38075
LINC01016 long intergenic non-protein coding RNA 1016 1.37906
IP6K3 inositol hexakisphosphate kinase 3 1.37441
CLIC1 chloride intracellular channel 1 1.37216
DDAH2 dimethylarginine dimethylaminohydrolase 2 1.37216
C6ORF25 chromosome 6 open reading frame 25 1.37216
MSH5 mutS homolog 5 1.37201
MSH5-SAPCD1 MSH5-SAPCD1 readthrough (NMD candidate) 1.37201
HLA-DPB2 major histocompatibility complex, class II, DP beta 2 (pseudogene) 1.36963
SLC22A7 solute carrier family 22 (organic anion transporter), member 7 1.36886
TTBK1 tau tubulin kinase 1 1.36886
CRIP3 cysteine-rich protein 3 1.36886
TJAP1 tight junction associated protein 1 (peripheral) 1.36866
LRRC73 leucine rich repeat containing 73 1.36866
DLK2 delta-like 2 homolog (Drosophila) 1.36866
YIPF3 Yip1 domain family, member 3 1.36855
POLR1C polymerase (RNA) I polypeptide C, 30kDa 1.36855
XPO5 exportin 5 1.36853
ZNF318 zinc finger protein 318 1.36849
ABCC10 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 1.36843
HLA-DOA major histocompatibility complex, class II, DO alpha 1.3678
HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 1.36774
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 1.36767
BAK1 BCL2-antagonist/killer 1 1.36754
LINC00336 long intergenic non-protein coding RNA 336 1.36748
GGNBP1 gametogenetin binding protein 1 (pseudogene) 1.36748
POLH polymerase (DNA directed), eta 1.36745
ZBTB9 zinc finger and BTB domain containing 9 1.36589
TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 1.36572
C6ORF47 chromosome 6 open reading frame 47 1.36567
CSNK2B casein kinase 2, beta polypeptide 1.36567
GPANK1 G patch domain and ankyrin repeats 1 1.36567
LY6G5B lymphocyte antigen 6 complex, locus G5B 1.36567
MIR4646 microRNA 4646 1.36567
LY6G5C lymphocyte antigen 6 complex, locus G5C 1.36567
OR10C1 olfactory receptor, family 10, subfamily C, member 1 (gene/pseudogene) 1.36555
CUTA cutA divalent cation tolerance homolog (E. coli) 1.36489
MIR5004 microRNA 5004 1.36489
PHF1 PHD finger protein 1 1.36489
SYNGAP1 synaptic Ras GTPase activating protein 1 1.36462
TFAP2D transcription factor AP-2 delta (activating enhancer binding protein 2 delta) 1.364
RSPH9 radial spoke head 9 homolog (Chlamydomonas) 1.36352
GUSBP4 glucuronidase, beta pseudogene 4 1.36322
LOC100294145 uncharacterized LOC100294145 1.36322
OR2H1 olfactory receptor, family 2, subfamily H, member 1 1.3632
MAS1L MAS1 proto-oncogene like, G protein-coupled receptor 1.3632
LY6G6E lymphocyte antigen 6 complex, locus G6E (pseudogene) 1.36163
LY6G6F lymphocyte antigen 6 complex, locus G6F 1.36163
LY6G6D lymphocyte antigen 6 complex, locus G6D 1.36163
ABHD16A abhydrolase domain containing 16A 1.36163
LY6G6C lymphocyte antigen 6 complex, locus G6C 1.36163
ADGRB3 adhesion G protein-coupled receptor B3 1.35985
OR12D2 olfactory receptor, family 12, subfamily D, member 2 (gene/pseudogene) 1.3593
OR11A1 olfactory receptor, family 11, subfamily A, member 1 1.3593
OR12D3 olfactory receptor, family 12, subfamily D, member 3 1.35922
UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 1.35802
CRISP3 cysteine-rich secretory protein 3 1.35724
PGK2 phosphoglycerate kinase 2 1.35724
CRISP2 cysteine-rich secretory protein 2 1.35724
KIFC1 kinesin family member C1 1.35717
RHAG Rh-associated glycoprotein 1.35676
TMPRSS2 transmembrane protease, serine 2 1.3548
MIR4639 microRNA 4639 1.34953
MYLIP myosin regulatory light chain interacting protein 1.34953
HLA-DMA major histocompatibility complex, class II, DM alpha 1.3461
BRD2 bromodomain containing 2 1.3461
ABT1 activator of basal transcription 1 1.3459
HLA-DMB major histocompatibility complex, class II, DM beta 1.3458
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 1.3452
ZFP57 ZFP57 zinc finger protein 1.3452
MOG myelin oligodendrocyte glycoprotein 1.3452
UBD ubiquitin D 1.34504
HLA-F major histocompatibility complex, class I, F 1.34494
LINC01015 long intergenic non-protein coding RNA 1015 1.34451
OR2H2 olfactory receptor, family 2, subfamily H, member 2 1.34451
SNORD32B small nucleolar RNA, C/D box 32B 1.34451
HLA-F-AS1 HLA-F antisense RNA 1 1.34449
IFITM4P interferon induced transmembrane protein 4 pseudogene 1.34449
HLA-G major histocompatibility complex, class I, G 1.34432
HCG4 HLA complex group 4 (non-protein coding) 1.34411
LOC554223 histocompatibility antigen-related 1.34411
ZBED9 zinc finger, BED-type containing 9 1.34237
OR5V1 olfactory receptor, family 5, subfamily V, member 1 1.34136
BTN3A1 butyrophilin, subfamily 3, member A1 1.34063
BTN2A2 butyrophilin, subfamily 2, member A2 1.34059
BTN3A2 butyrophilin, subfamily 3, member A2 1.34059
HCRTR2 hypocretin (orexin) receptor 2 1.34015
GFRAL GDNF family receptor alpha like 1.33991
HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 1.33916
C6ORF141 chromosome 6 open reading frame 141 1.33899
TAPBP TAP binding protein (tapasin) 1.33873
DAXX death-domain associated protein 1.33873
RGL2 ral guanine nucleotide dissociation stimulator-like 2 1.33873
PFDN6 prefoldin subunit 6 1.33873
WDR46 WD repeat domain 46 1.33873
B3GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 1.33873
RPS18 ribosomal protein S18 1.33873
ZBTB22 zinc finger and BTB domain containing 22 1.33873
HIST1H2BC histone cluster 1, H2bc 1.33839
HIST1H2AC histone cluster 1, H2ac 1.33839
PRIM2 primase, DNA, polypeptide 2 (58kDa) 1.33806
HFE hemochromatosis 1.33747
QKI QKI, KH domain containing, RNA binding 1.33739
HIST1H1T histone cluster 1, H1t 1.33731
HIST1H4C histone cluster 1, H4c 1.33731
HIST1H2AB histone cluster 1, H2ab 1.33717
HIST1H3B histone cluster 1, H3b 1.33693
HIST1H4B histone cluster 1, H4b 1.33652
HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 1.33557
HCG9 HLA complex group 9 (non-protein coding) 1.33533
HIST1H3C histone cluster 1, H3c 1.33492
HIST1H2BB histone cluster 1, H2bb 1.33492
STMND1 stathmin domain containing 1 1.33434
PRSS16 protease, serine, 16 (thymus) 1.33182
LOC100270746 uncharacterized LOC100270746 1.33175
HIST1H2AG histone cluster 1, H2ag 1.33175
HIST1H2BJ histone cluster 1, H2bj 1.33175
HIST1H2BK histone cluster 1, H2bk 1.33175
HIST1H4I histone cluster 1, H4i 1.33175
MIR3143 microRNA 3143 1.33175
HIST1H2AH histone cluster 1, H2ah 1.33175
HMGN4 high mobility group nucleosomal binding domain 4 1.33134
TRIM38 tripartite motif containing 38 1.33064
HIST1H1A histone cluster 1, H1a 1.33029
PSMB8-AS1 PSMB8 antisense RNA 1 (head to head) 1.32937
TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 1.32937
PSMB8 proteasome (prosome, macropain) subunit, beta type, 8 1.32937
ZNF322 zinc finger protein 322 1.32901
HIST1H1C histone cluster 1, H1c 1.32826
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 1.32826
PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 1.32826

low copy number

Symbol Name Standardized Value
FREM1 FRAS1 related extracellular matrix 1 -3.21049
ABHD4 abhydrolase domain containing 4 -3.21049
PLAGL1 pleiomorphic adenoma gene-like 1 -3.21049
RNF139 ring finger protein 139 -3.15042
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa -3.15
TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) -3.15
TATDN1 TatD DNase domain containing 1 -3.14701
ZNF572 zinc finger protein 572 -2.96626
LINC00964 long intergenic non-protein coding RNA 964 -2.96626
SQLE squalene epoxidase -2.9648
KIAA0196 KIAA0196 -2.95106
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) -2.75612
ALMS1P Alstrom syndrome 1 pseudogene -2.59447
NBPF15 neuroblastoma breakpoint family, member 15 -2.547
NMUR2 neuromedin U receptor 2 -2.44439
PWRN2 Prader-Willi region non-protein coding RNA 2 -2.25054
IFNA14 interferon, alpha 14 -2.20366
AFF3 AF4/FMR2 family, member 3 -2.20345
LOC642361 uncharacterized LOC642361 -2.14054
BIN1 bridging integrator 1 -2.09268
IFNA22P interferon, alpha 22, pseudogene -2.08089
ZFHX3 zinc finger homeobox 3 -2.06445
MTSS1 metastasis suppressor 1 -2.03946
CNTLN centlein, centrosomal protein -2.00402
NETO1 neuropilin (NRP) and tolloid (TLL)-like 1 -2.00401
SNX29 sorting nexin 29 -2.00401
SH3GL2 SH3-domain GRB2-like 2 -1.99455
BNC2 basonuclin 2 -1.98637
TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) -1.98446
MOXD1 monooxygenase, DBH-like 1 -1.94284
SNX29P2 sorting nexin 29 pseudogene 2 -1.90946
ANKRD30BP2 ankyrin repeat domain 30B pseudogene 2 -1.8858
CRYZ crystallin, zeta (quinone reductase) -1.75022
PUS7 pseudouridylate synthase 7 (putative) -1.72657
ARID1B AT rich interactive domain 1B (SWI1-like) -1.71592
MAPK10 mitogen-activated protein kinase 10 -1.71222
FBLN2 fibulin 2 -1.58773
OR2T29 olfactory receptor, family 2, subfamily T, member 29 -1.55349
LINC00266-1 long intergenic non-protein coding RNA 266-1 -1.5219
LOC100130849 phosphorylase kinase, gamma 1 (muscle) pseudogene -1.51285
GOLGA6L9 golgin A6 family-like 9 -1.50836
RPS17 ribosomal protein S17 -1.50815
MOB2 MOB kinase activator 2 -1.48041
ZNF479 zinc finger protein 479 -1.44204
RNF103-CHMP3 RNF103-CHMP3 readthrough -1.39316
RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae) -1.39306
RNF7 ring finger protein 7 -1.38186
RASA2 RAS p21 protein activator 2 -1.3817
GRK7 G protein-coupled receptor kinase 7 -1.38108
PXYLP1 2-phosphoxylose phosphatase 1 -1.36397
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -1.36214
XRN1 5'-3' exoribonuclease 1 -1.35313
ATR ATR serine/threonine kinase -1.35216
SOX14 SRY (sex determining region Y)-box 14 -1.35104
CLDN18 claudin 18 -1.35095
DBR1 debranching RNA lariats 1 -1.3471
A4GNT alpha-1,4-N-acetylglucosaminyltransferase -1.34657
RAP2B RAP2B, member of RAS oncogene family -1.34608
B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) -1.34239
TRIM42 tripartite motif containing 42 -1.34061
PRR23B proline rich 23B -1.34058
FOXL2 forkhead box L2 -1.34032
FOXL2NB FOXL2 neighbor -1.34032
PRR23A proline rich 23A -1.34027
ARL14 ADP-ribosylation factor-like 14 -1.3377
LOC100507537 uncharacterized LOC100507537 -1.33764
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 -1.33556
SSR3 signal sequence receptor, gamma (translocon-associated protein gamma) -1.33427
TIPARP TCDD-inducible poly(ADP-ribose) polymerase -1.33421
TIPARP-AS1 TIPARP antisense RNA 1 -1.33421
PA2G4P4 proliferation-associated 2G4 pseudogene 4 -1.33414
LINC00881 long intergenic non-protein coding RNA 881 -1.33315
PISRT1 polled intersex syndrome regulated transcript 1 (non-protein coding RNA) -1.33235
SLC33A1 solute carrier family 33 (acetyl-CoA transporter), member 1 -1.33233
SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 -1.33148
PLCH1 phospholipase C, eta 1 -1.3309
MRAS muscle RAS oncogene homolog -1.32978
ESYT3 extended synaptotagmin-like protein 3 -1.32949
C3ORF79 chromosome 3 open reading frame 79 -1.32855
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -1.32629
OTOL1 otolin 1 -1.32603
BPESC1 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) -1.32599
SPTSSB serine palmitoyltransferase, small subunit B -1.32589
NMD3 NMD3 ribosome export adaptor -1.32519
CCNL1 cyclin L1 -1.32371
TRIM59 tripartite motif containing 59 -1.32354
SMC4 structural maintenance of chromosomes 4 -1.3235
ARHGEF26 Rho guanine nucleotide exchange factor (GEF) 26 -1.32303
SCARNA7 small Cajal body-specific RNA 7 -1.32273
LOC100507389 uncharacterized LOC100507389 -1.32249
PAQR9 progestin and adipoQ receptor family member IX -1.32249
RBP1 retinol binding protein 1, cellular -1.32247
RBP2 retinol binding protein 2, cellular -1.32247
MRPS22 mitochondrial ribosomal protein S22 -1.32247
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -1.32217
GK5 glycerol kinase 5 (putative) -1.32137
C3ORF80 chromosome 3 open reading frame 80 -1.32023
MIR15B microRNA 15b -1.32008
MIR16-2 microRNA 16-2 -1.32008